Wall clock time and date at job start Tue Mar 31 2020 13:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86800 * 120.00401 * 2 1 4 4 H 1.48499 * 109.47388 * 239.99954 * 3 2 1 5 5 H 1.48493 * 109.46876 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46888 * 119.99752 * 3 2 1 7 7 C 1.38655 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00182 * 180.02562 * 7 2 1 9 9 O 1.34819 * 119.99950 * 359.97438 * 7 2 1 10 10 C 1.35690 * 116.99879 * 185.05726 * 9 7 2 11 11 C 1.39000 * 119.94844 * 354.45583 * 10 9 7 12 12 C 1.37842 * 120.05375 * 179.97438 * 11 10 9 13 13 C 1.39439 * 119.94393 * 0.02562 * 12 11 10 14 14 C 1.48330 * 120.04973 * 179.97438 * 13 12 11 15 15 C 1.39426 * 120.09814 * 359.97438 * 14 13 12 16 16 C 1.38008 * 119.98273 * 179.72118 * 15 14 13 17 17 C 1.38258 * 120.18829 * 0.25987 * 16 15 14 18 18 C 1.38804 * 120.19424 * 0.02562 * 17 16 15 19 19 O 1.35904 * 119.99390 * 180.02562 * 18 17 16 20 20 C 1.42899 * 117.00011 * 0.02562 * 19 18 17 21 21 F 1.39899 * 109.47380 * 59.99309 * 20 19 18 22 22 F 1.39899 * 109.47097 * 180.02562 * 20 19 18 23 23 F 1.39904 * 109.46735 * 299.99678 * 20 19 18 24 24 C 1.38529 * 120.00979 * 359.97438 * 18 17 16 25 25 C 1.39432 * 119.89705 * 0.24882 * 13 12 11 26 26 C 1.37838 * 119.94875 * 359.46823 * 25 13 12 27 27 H 0.97002 * 119.99380 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.97840 * 359.97033 * 11 10 9 29 29 H 1.07995 * 120.03073 * 180.02562 * 12 11 10 30 30 H 1.08000 * 120.00330 * 359.97438 * 15 14 13 31 31 H 1.08010 * 119.90633 * 180.27590 * 16 15 14 32 32 H 1.08005 * 119.90428 * 180.02562 * 17 16 15 33 33 H 1.08002 * 120.08921 * 180.02562 * 24 18 17 34 34 H 1.07999 * 120.02276 * 179.72995 * 25 13 12 35 35 H 1.07995 * 119.97401 * 180.27520 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6962 1.2126 7 6 2.0087 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3683 -0.0005 10 6 2.0695 -3.5040 0.1055 11 6 3.4578 -3.4360 0.0915 12 6 4.2065 -4.5883 0.1997 13 6 3.5701 -5.8229 0.3225 14 6 4.3735 -7.0644 0.4385 15 6 5.7662 -6.9999 0.4243 16 6 6.5113 -8.1559 0.5381 17 6 5.8808 -9.3802 0.6609 18 6 4.4948 -9.4538 0.6699 19 8 3.8793 -10.6594 0.7914 20 6 4.7206 -11.8088 0.9061 21 9 5.5293 -11.6835 2.0408 22 9 3.9290 -12.9565 1.0213 23 9 5.5272 -11.9116 -0.2324 24 6 3.7388 -8.2986 0.5562 25 6 2.1774 -5.8892 0.3305 26 6 1.4329 -4.7336 0.2280 27 1 -0.4849 0.8401 -0.0004 28 1 3.9503 -2.4797 -0.0041 29 1 5.2851 -4.5350 0.1892 30 1 6.2616 -6.0450 0.3284 31 1 7.5902 -8.1040 0.5314 32 1 6.4685 -10.2820 0.7501 33 1 2.6603 -8.3543 0.5635 34 1 1.6823 -6.8447 0.4212 35 1 0.3542 -4.7841 0.2387 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590785.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:16 Heat of formation + Delta-G solvation = -185.571107 kcal Electronic energy + Delta-G solvation = -25601.001960 eV Core-core repulsion = 21114.335071 eV Total energy + Delta-G solvation = -4486.666889 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.48241 -49.19996 -49.06908 -41.41160 -40.71749 -39.16977 -37.69667 -34.38843 -32.94028 -32.28364 -31.23856 -29.22991 -27.36017 -27.04651 -24.49229 -24.24502 -22.78422 -22.32481 -20.39207 -20.19909 -20.14228 -19.73909 -18.97126 -17.86674 -17.35868 -16.49235 -16.34753 -16.28738 -16.02893 -15.88129 -15.74428 -15.59681 -15.53122 -15.47637 -15.41240 -15.18380 -14.88342 -14.86470 -14.60791 -14.18323 -13.95134 -13.72035 -13.54292 -12.88321 -12.86965 -12.78336 -12.45221 -12.29745 -12.14016 -11.92036 -11.16462 -10.89603 -10.23806 -9.86606 -9.66796 -8.62634 -8.49039 -6.16139 -0.24433 0.27006 0.43667 0.57329 0.97425 1.36761 1.47720 1.52906 1.76897 2.17362 2.54022 2.73622 2.89368 2.98907 3.23298 3.44404 3.60118 3.67936 3.88873 4.00218 4.08002 4.24069 4.28321 4.38022 4.49882 4.70889 4.83853 5.00072 5.04908 5.08152 5.16448 5.31896 5.33408 5.39087 5.58582 5.65853 5.81993 5.93211 5.99897 6.12120 6.95183 7.73406 8.73230 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.036296 B = 0.002218 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.250344 B =12618.364232 C =13207.273573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.019 2.981 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.415 4.415 8 H 0.107 0.893 9 O -0.225 6.225 10 C 0.124 3.876 11 C -0.242 4.242 12 C -0.046 4.046 13 C -0.143 4.143 14 C 0.014 3.986 15 C -0.142 4.142 16 C -0.066 4.066 17 C -0.208 4.208 18 C 0.097 3.903 19 O -0.320 6.320 20 C 0.609 3.391 21 F -0.163 7.163 22 F -0.131 7.131 23 F -0.163 7.163 24 C -0.142 4.142 25 C -0.052 4.052 26 C -0.204 4.204 27 H 0.274 0.726 28 H 0.128 0.872 29 H 0.152 0.848 30 H 0.149 0.851 31 H 0.164 0.836 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.961 -20.709 1.722 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.491 4.491 8 H 0.124 0.876 9 O -0.130 6.130 10 C 0.072 3.928 11 C -0.261 4.261 12 C -0.063 4.063 13 C -0.144 4.144 14 C 0.014 3.986 15 C -0.160 4.160 16 C -0.084 4.084 17 C -0.226 4.226 18 C 0.055 3.945 19 O -0.241 6.241 20 C 0.518 3.482 21 F -0.145 7.145 22 F -0.113 7.113 23 F -0.145 7.145 24 C -0.160 4.160 25 C -0.069 4.069 26 C -0.223 4.223 27 H 0.083 0.917 28 H 0.145 0.855 29 H 0.170 0.830 30 H 0.166 0.834 31 H 0.182 0.818 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.364 -20.601 1.708 25.172 hybrid contribution -0.175 0.561 -0.006 0.588 sum 14.189 -20.040 1.701 24.613 Atomic orbital electron populations 1.70177 1.08113 1.29040 1.48208 1.26625 0.96828 1.02854 0.95640 0.84640 0.77405 0.74115 0.80053 1.17977 1.19829 1.18039 1.21857 0.92737 0.81238 1.53289 0.87584 1.83931 1.36167 1.12703 1.80245 1.20058 0.91733 0.87865 0.93128 1.21235 0.92885 1.00217 1.11774 1.21174 1.00343 0.90183 0.94622 1.18479 0.92692 0.92201 1.10992 1.18510 0.93459 0.90514 0.96104 1.21555 0.92340 1.00299 1.01832 1.21190 1.01644 0.90172 0.95402 1.21702 0.91839 1.01270 1.07797 1.18632 0.92177 0.82037 1.01636 1.86388 1.35445 1.13651 1.88598 1.19235 0.75057 0.79075 0.74815 1.93303 1.73550 1.95584 1.52095 1.93311 1.74927 1.47198 1.95818 1.93304 1.73673 1.95928 1.51636 1.20494 1.00932 0.88763 1.05822 1.21084 0.93058 0.97208 0.95577 1.20383 1.00166 0.90335 1.11425 0.91724 0.85478 0.83020 0.83372 0.81811 0.83966 0.84002 0.83389 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.20 13.67 21.61 0.30 -54.91 16 2 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 3 Si 1.02 41.37 29.55 68.60 2.03 43.40 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.42 -23.37 9.48 67.92 0.64 -22.72 16 8 H 0.11 5.38 5.19 -2.91 -0.02 5.36 16 9 O -0.22 -13.12 9.75 -21.97 -0.21 -13.34 16 10 C 0.12 5.92 6.65 22.64 0.15 6.07 16 11 C -0.24 -9.91 9.15 22.36 0.20 -9.71 16 12 C -0.05 -1.46 9.42 22.47 0.21 -1.25 16 13 C -0.14 -4.41 5.88 -20.01 -0.12 -4.52 16 14 C 0.01 0.36 5.87 -20.05 -0.12 0.24 16 15 C -0.14 -2.88 9.42 22.50 0.21 -2.67 16 16 C -0.07 -1.11 10.03 22.22 0.22 -0.89 16 17 C -0.21 -3.91 8.25 22.41 0.18 -3.72 16 18 C 0.10 2.16 6.48 22.47 0.15 2.31 16 19 O -0.32 -6.86 10.37 -92.47 -0.96 -7.82 16 20 C 0.61 10.69 3.42 113.37 0.39 11.08 16 21 F -0.16 -2.76 15.56 44.97 0.70 -2.06 16 22 F -0.13 -2.22 17.53 44.97 0.79 -1.43 16 23 F -0.16 -2.76 15.55 44.97 0.70 -2.06 16 24 C -0.14 -3.42 9.36 22.59 0.21 -3.21 16 25 C -0.05 -1.70 9.42 22.46 0.21 -1.49 16 26 C -0.20 -8.40 9.98 22.36 0.22 -8.18 16 27 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.13 5.20 5.62 -2.91 -0.02 5.18 16 29 H 0.15 3.65 6.19 -2.91 -0.02 3.63 16 30 H 0.15 2.46 6.19 -2.91 -0.02 2.44 16 31 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.14 2.24 5.08 -2.91 -0.01 2.23 16 33 H 0.14 3.20 6.20 -2.91 -0.02 3.18 16 34 H 0.15 3.88 6.20 -2.91 -0.02 3.86 16 35 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -66.84 316.73 7.76 -59.07 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 1.18 Total: 18.52 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 3.24 Total: -39.37 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.30 Total: -54.91 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -1.17 Total: -21.16 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 2.19 Total: -5.56 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -66.84 7.76 -59.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590785.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.497 kcal (2) G-P(sol) polarization free energy of solvation -66.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds