Wall clock time and date at job start Tue Mar 31 2020 14:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86801 * 119.99987 * 2 1 4 4 H 1.48500 * 109.47401 * 240.00373 * 3 2 1 5 5 H 1.48497 * 109.47003 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46979 * 120.00060 * 3 2 1 7 7 C 1.38645 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00341 * 180.02562 * 7 2 1 9 9 O 1.34818 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.35685 * 117.00145 * 174.92807 * 9 7 2 11 11 C 1.39017 * 119.93726 * 5.70105 * 10 9 7 12 12 C 1.37806 * 120.05796 * 179.97438 * 11 10 9 13 13 C 1.39515 * 119.93886 * 359.97035 * 12 11 10 14 14 C 1.48160 * 120.05844 * 179.97438 * 13 12 11 15 15 N 1.32678 * 119.78893 * 224.65416 * 14 13 12 16 16 C 1.31734 * 121.67929 * 179.75364 * 15 14 13 17 17 C 1.38344 * 121.07135 * 0.53841 * 16 15 14 18 18 C 1.50698 * 120.27417 * 179.74633 * 17 16 15 19 19 F 1.39896 * 109.47523 * 269.72577 * 18 17 16 20 20 F 1.39901 * 109.47121 * 29.72593 * 18 17 16 21 21 F 1.39902 * 109.47170 * 149.72370 * 18 17 16 22 22 C 1.38601 * 119.45721 * 359.47255 * 17 16 15 23 23 C 1.39133 * 118.44794 * 0.25498 * 22 17 16 24 24 N 1.39487 * 120.54329 * 179.97438 * 23 22 17 25 25 C 1.39508 * 119.88139 * 0.28461 * 13 12 11 26 26 C 1.37806 * 119.94115 * 359.46170 * 25 13 12 27 27 H 0.96998 * 119.99917 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.97421 * 359.97409 * 11 10 9 29 29 H 1.08003 * 120.03626 * 179.97438 * 12 11 10 30 30 H 1.08007 * 119.46426 * 180.28592 * 16 15 14 31 31 H 1.08000 * 120.77785 * 180.22589 * 22 17 16 32 32 H 0.96998 * 119.99963 * 355.56494 * 24 23 22 33 33 H 0.96999 * 120.00120 * 175.57092 * 24 23 22 34 34 H 1.08005 * 120.02624 * 179.72025 * 25 13 12 35 35 H 1.08003 * 119.97228 * 180.23323 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3348 -2.3683 -0.0005 10 6 2.0696 -3.5038 -0.1080 11 6 3.4580 -3.4358 -0.0920 12 6 4.2068 -4.5877 -0.2004 13 6 3.5702 -5.8228 -0.3256 14 6 4.3726 -7.0627 -0.4429 15 7 4.0457 -7.9763 -1.3478 16 6 4.7358 -9.0897 -1.4875 17 6 5.8294 -9.3574 -0.6835 18 6 6.6026 -10.6395 -0.8550 19 9 6.0572 -11.6273 -0.0280 20 9 6.5276 -11.0545 -2.1889 21 9 7.9410 -10.4270 -0.5073 22 6 6.2115 -8.4343 0.2771 23 6 5.4709 -7.2632 0.4025 24 7 5.8164 -6.3046 1.3551 25 6 2.1768 -5.8875 -0.3466 26 6 1.4328 -4.7332 -0.2326 27 1 -0.4850 0.8400 -0.0004 28 1 3.9503 -2.4795 0.0054 29 1 5.2854 -4.5344 -0.1884 30 1 4.4407 -9.8070 -2.2391 31 1 7.0640 -8.6199 0.9137 32 1 6.5379 -6.4793 1.9794 33 1 5.3351 -5.4633 1.3932 34 1 1.6816 -6.8420 -0.4480 35 1 0.3540 -4.7831 -0.2451 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:43 Heat of formation + Delta-G solvation = -114.959709 kcal Electronic energy + Delta-G solvation = -25820.822633 eV Core-core repulsion = 21369.510435 eV Total energy + Delta-G solvation = -4451.312198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.32661 -47.84607 -47.78920 -40.56416 -39.02170 -36.72363 -35.27480 -33.22222 -32.38434 -30.41630 -29.89739 -28.68239 -26.14047 -25.35121 -23.63599 -22.53507 -21.99466 -20.93132 -18.75222 -18.66888 -18.60845 -18.15354 -17.56472 -17.17295 -16.40849 -15.94987 -15.25610 -14.82168 -14.71475 -14.60244 -14.54396 -14.24669 -14.07744 -14.00078 -13.94976 -13.83730 -13.75358 -13.58007 -13.20721 -12.87383 -12.54642 -12.33200 -11.83516 -11.51908 -11.49239 -11.16511 -11.02602 -10.85089 -10.56932 -9.95875 -9.64747 -9.51129 -8.99484 -8.40614 -8.01044 -7.17743 -6.62030 -4.19553 0.57892 1.28219 2.01701 2.11236 2.47303 3.03259 3.04817 3.08016 3.46011 3.58185 3.67179 3.82988 3.95964 4.25749 4.29087 4.43979 4.69946 4.71864 4.93252 5.05636 5.12446 5.25038 5.41178 5.60561 5.70883 5.76888 6.01421 6.20289 6.26548 6.48906 6.67953 6.86465 7.04058 7.10408 7.20257 7.24358 7.54913 7.60299 7.81989 7.95299 8.82521 9.49395 10.54808 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.032936 B = 0.002411 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.942121 B =11612.220313 C =12037.766393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.042 3.958 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.095 0.905 9 O -0.166 6.166 10 C 0.164 3.836 11 C -0.233 4.233 12 C -0.062 4.062 13 C -0.158 4.158 14 C 0.169 3.831 15 N -0.441 5.441 16 C 0.095 3.905 17 C -0.210 4.210 18 C 0.517 3.483 19 F -0.177 7.177 20 F -0.176 7.176 21 F -0.179 7.179 22 C -0.116 4.116 23 C 0.173 3.827 24 N -0.863 5.863 25 C -0.030 4.030 26 C -0.193 4.193 27 H 0.274 0.726 28 H 0.132 0.868 29 H 0.112 0.888 30 H 0.161 0.839 31 H 0.141 0.859 32 H 0.397 0.603 33 H 0.411 0.589 34 H 0.119 0.881 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.912 -15.308 1.293 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.112 0.888 9 O -0.068 6.068 10 C 0.108 3.892 11 C -0.252 4.252 12 C -0.081 4.081 13 C -0.160 4.160 14 C 0.027 3.973 15 N -0.149 5.149 16 C -0.065 4.065 17 C -0.215 4.215 18 C 0.462 3.538 19 F -0.159 7.159 20 F -0.157 7.157 21 F -0.161 7.161 22 C -0.147 4.147 23 C 0.064 3.936 24 N -0.405 5.405 25 C -0.049 4.049 26 C -0.212 4.212 27 H 0.084 0.916 28 H 0.150 0.850 29 H 0.130 0.870 30 H 0.178 0.822 31 H 0.159 0.841 32 H 0.226 0.774 33 H 0.246 0.754 34 H 0.137 0.863 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.731 -14.953 0.756 19.020 hybrid contribution 1.561 0.592 0.738 1.825 sum 13.291 -14.361 1.494 19.624 Atomic orbital electron populations 1.70025 1.06068 1.28233 1.44459 1.25352 0.95882 0.99045 0.96133 0.85744 0.78762 0.79443 0.79323 1.19314 1.20126 1.19360 1.21350 0.91927 0.80658 1.53104 0.88778 1.83961 1.34664 1.11629 1.76498 1.19503 0.90244 0.88007 0.91459 1.21053 0.93738 0.98693 1.11749 1.20718 0.98265 0.91314 0.97812 1.17748 0.92756 0.89632 1.15857 1.19760 0.91848 0.94188 0.91517 1.67890 1.28446 1.01086 1.17431 1.22262 0.91123 0.95104 0.98006 1.20664 1.01542 0.95478 1.03767 1.18135 0.77374 0.84459 0.73829 1.93223 1.85609 1.64634 1.72399 1.93191 1.96092 1.91526 1.34921 1.93180 1.36009 1.94917 1.91972 1.20580 1.01018 0.93149 0.99908 1.18554 0.93990 0.89999 0.91093 1.42782 1.41405 1.19806 1.36532 1.20655 0.92024 0.97164 0.95049 1.20196 0.99902 0.90026 1.11102 0.91633 0.85003 0.86969 0.82207 0.84129 0.77434 0.75420 0.86334 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.88 13.67 55.48 0.76 -23.13 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.32 29.55 -169.99 -5.02 14.30 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 7 C -0.39 -10.33 9.48 30.88 0.29 -10.03 16 8 H 0.09 2.23 5.19 -52.49 -0.27 1.96 16 9 O -0.17 -4.44 9.75 0.28 0.00 -4.44 16 10 C 0.16 3.67 6.65 -39.01 -0.26 3.41 16 11 C -0.23 -4.56 9.15 -39.45 -0.36 -4.92 16 12 C -0.06 -1.02 7.65 -39.26 -0.30 -1.32 16 13 C -0.16 -2.65 5.40 -104.87 -0.57 -3.22 16 14 C 0.17 2.57 6.38 -82.75 -0.53 2.04 16 15 N -0.44 -6.70 10.16 -9.64 -0.10 -6.80 16 16 C 0.09 1.20 10.55 -17.55 -0.19 1.01 16 17 C -0.21 -2.43 5.47 -104.45 -0.57 -3.00 16 18 C 0.52 5.46 3.37 36.00 0.12 5.58 16 19 F -0.18 -1.93 17.30 2.25 0.04 -1.89 16 20 F -0.18 -1.86 16.46 2.25 0.04 -1.83 16 21 F -0.18 -1.88 16.52 2.25 0.04 -1.84 16 22 C -0.12 -1.29 9.38 -39.12 -0.37 -1.66 16 23 C 0.17 2.16 6.66 -83.37 -0.56 1.61 16 24 N -0.86 -8.83 8.58 32.64 0.28 -8.55 16 25 C -0.03 -0.53 9.65 -39.27 -0.38 -0.90 16 26 C -0.19 -3.85 9.98 -39.45 -0.39 -4.24 16 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.13 2.54 5.62 -52.49 -0.30 2.25 16 29 H 0.11 1.57 6.88 -52.48 -0.36 1.21 16 30 H 0.16 1.66 7.59 -52.48 -0.40 1.26 16 31 H 0.14 1.22 7.68 -52.49 -0.40 0.82 16 32 H 0.40 2.88 8.86 -40.82 -0.36 2.52 16 33 H 0.41 4.58 5.42 -40.82 -0.22 4.36 16 34 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 35 H 0.12 2.35 8.06 -52.48 -0.42 1.92 16 LS Contribution 320.22 15.07 4.83 4.83 Total: -1.00 -28.96 320.22 -5.58 -34.54 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -2.29 Total: 9.45 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -4.15 Total: -14.66 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.94 Total: -38.47 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: 0.00 Total: -4.44 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.11 Total: -5.56 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.96 -5.58 -34.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.415 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds