Wall clock time and date at job start Tue Mar 31 2020 14:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86797 * 120.00000 * 2 1 4 4 H 1.48494 * 109.47409 * 240.00110 * 3 2 1 5 5 H 1.48505 * 109.47010 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47318 * 119.99823 * 3 2 1 7 7 C 1.38639 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99555 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00444 * 0.02562 * 7 2 1 10 10 C 1.35696 * 117.00210 * 185.05552 * 9 7 2 11 11 C 1.39000 * 119.94923 * 354.45795 * 10 9 7 12 12 C 1.37843 * 120.04887 * 180.02562 * 11 10 9 13 13 C 1.39425 * 119.95295 * 359.97438 * 12 11 10 14 14 C 1.48339 * 120.05363 * 180.02562 * 13 12 11 15 15 C 1.39951 * 119.89505 * 359.97438 * 14 13 12 16 16 C 1.36572 * 120.56851 * 180.02562 * 15 14 13 17 17 C 1.38872 * 120.18588 * 0.22884 * 16 15 14 18 18 O 1.34991 * 133.75024 * 179.72184 * 17 16 15 19 19 C 1.34737 * 107.94224 * 180.02562 * 18 17 16 20 20 C 1.47917 * 124.97104 * 180.02562 * 19 18 17 21 21 N 1.34773 * 120.00155 * 359.97142 * 20 19 18 22 22 O 1.21547 * 119.99963 * 179.97438 * 20 19 18 23 23 N 1.30688 * 110.05557 * 359.49301 * 19 18 17 24 24 C 1.34763 * 108.94955 * 0.58562 * 23 19 18 25 25 C 1.38701 * 119.89524 * 179.97438 * 14 13 12 26 26 C 1.39434 * 119.89601 * 0.27227 * 13 12 11 27 27 C 1.37842 * 119.94631 * 359.47466 * 26 13 12 28 28 H 0.97001 * 119.99530 * 359.97438 * 1 2 3 29 29 H 1.07990 * 119.97084 * 0.02562 * 11 10 9 30 30 H 1.08008 * 120.02284 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.71016 * 359.97279 * 15 14 13 32 32 H 1.07999 * 119.91037 * 179.97438 * 16 15 14 33 33 H 0.97000 * 119.99652 * 0.02562 * 21 20 19 34 34 H 0.96995 * 120.00110 * 180.02562 * 21 20 19 35 35 H 1.07999 * 120.26271 * 0.02562 * 25 14 13 36 36 H 1.07996 * 120.02992 * 179.72677 * 26 13 12 37 37 H 1.07997 * 119.97899 * 180.22847 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3348 -2.3682 0.0005 10 6 2.0697 -3.5039 0.1076 11 6 3.4580 -3.4358 0.0947 12 6 4.2066 -4.5882 0.2028 13 6 3.5703 -5.8227 0.3257 14 6 4.3737 -7.0642 0.4428 15 6 5.7714 -6.9945 0.4291 16 6 6.5245 -8.1288 0.5355 17 6 5.9081 -9.3676 0.6539 18 8 6.3676 -10.6317 0.7682 19 6 5.3036 -11.4543 0.8501 20 6 5.3777 -12.9253 0.9863 21 7 6.5772 -13.5379 1.0363 22 8 4.3569 -13.5817 1.0530 23 7 4.1967 -10.7612 0.8031 24 6 4.5032 -9.4552 0.6751 25 6 3.7373 -8.2905 0.5654 26 6 2.1775 -5.8890 0.3332 27 6 1.4331 -4.7335 0.2301 28 1 -0.4849 0.8401 0.0004 29 1 3.9504 -2.4794 -0.0001 30 1 5.2853 -4.5349 0.1923 31 1 6.2585 -6.0354 0.3328 32 1 7.6024 -8.0627 0.5233 33 1 7.3918 -13.0141 0.9833 34 1 6.6257 -14.5026 1.1252 35 1 2.6587 -8.3453 0.5756 36 1 1.6824 -6.8445 0.4239 37 1 0.3544 -4.7839 0.2396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:53 Heat of formation + Delta-G solvation = 7.990431 kcal Electronic energy + Delta-G solvation = -24649.723458 eV Core-core repulsion = 20745.599519 eV Total energy + Delta-G solvation = -3904.123939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.53553 -39.84576 -39.40661 -38.26176 -36.32525 -35.14777 -34.25669 -32.56598 -31.48984 -30.85653 -29.92143 -27.98762 -25.91278 -25.20781 -23.41099 -22.83239 -21.45915 -21.24003 -20.99039 -18.78652 -18.38468 -18.01379 -17.51595 -17.28569 -17.21075 -16.43586 -15.47110 -15.00930 -14.82934 -14.71773 -14.50645 -14.29729 -14.06289 -13.87935 -13.81868 -12.99533 -12.89857 -12.83350 -12.31913 -11.90373 -11.88819 -11.76402 -11.39521 -11.12996 -11.06312 -11.00512 -10.89353 -10.60978 -10.47594 -10.40557 -9.49697 -9.28232 -8.77413 -8.73474 -8.38526 -7.11710 -6.61782 -4.18102 0.11047 0.82940 1.62510 1.88614 2.08961 2.26348 2.63228 2.74003 3.04231 3.05336 3.08627 3.60385 3.83623 3.91377 4.27453 4.50440 4.53965 4.82859 4.90874 4.94556 4.99153 5.07219 5.23442 5.43536 5.54586 5.57239 5.85467 5.93582 6.01764 6.04702 6.07274 6.07539 6.35218 6.41421 6.51307 6.56049 6.73537 6.90633 7.09335 7.17829 7.24893 7.26850 7.51295 7.61881 7.82620 8.82715 9.49834 10.54945 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.040688 B = 0.002058 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.999619 B =13602.513092 C =14273.425234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.166 6.166 10 C 0.162 3.838 11 C -0.236 4.236 12 C -0.048 4.048 13 C -0.168 4.168 14 C 0.006 3.994 15 C -0.080 4.080 16 C -0.092 4.092 17 C 0.006 3.994 18 O -0.205 6.205 19 C 0.177 3.823 20 C 0.626 3.374 21 N -0.834 5.834 22 O -0.488 6.488 23 N -0.399 5.399 24 C 0.024 3.976 25 C -0.070 4.070 26 C -0.052 4.052 27 C -0.192 4.192 28 H 0.274 0.726 29 H 0.131 0.869 30 H 0.113 0.887 31 H 0.146 0.854 32 H 0.137 0.863 33 H 0.410 0.590 34 H 0.417 0.583 35 H 0.142 0.858 36 H 0.118 0.882 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.239 -17.664 1.331 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.113 0.887 9 O -0.067 6.067 10 C 0.106 3.894 11 C -0.255 4.255 12 C -0.066 4.066 13 C -0.169 4.169 14 C 0.004 3.996 15 C -0.098 4.098 16 C -0.111 4.111 17 C -0.045 4.045 18 O -0.096 6.096 19 C -0.035 4.035 20 C 0.405 3.595 21 N -0.400 5.400 22 O -0.359 6.359 23 N -0.131 5.131 24 C -0.090 4.090 25 C -0.089 4.089 26 C -0.071 4.071 27 C -0.211 4.211 28 H 0.084 0.916 29 H 0.149 0.851 30 H 0.131 0.869 31 H 0.163 0.837 32 H 0.155 0.845 33 H 0.240 0.760 34 H 0.250 0.750 35 H 0.160 0.840 36 H 0.136 0.864 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.417 -17.978 1.375 23.085 hybrid contribution 1.639 0.970 -0.028 1.904 sum 16.056 -17.008 1.347 23.428 Atomic orbital electron populations 1.70032 1.06071 1.28243 1.44364 1.25368 0.95905 0.99087 0.96157 0.85729 0.78747 0.79376 0.79334 1.19325 1.20133 1.19321 1.21367 0.91973 0.80642 1.52890 0.88725 1.83954 1.34748 1.11682 1.76334 1.19516 0.90333 0.87965 0.91572 1.21092 0.93692 0.98964 1.11780 1.20781 0.98426 0.91300 0.96111 1.18022 0.92618 0.90880 1.15381 1.18687 0.92508 0.92312 0.96076 1.21007 0.93126 0.97940 0.97721 1.19505 1.00546 0.86786 1.04230 1.20515 0.93805 0.84245 1.05934 1.84469 1.35668 1.15644 1.73857 1.25487 0.80247 0.93712 1.04066 1.16049 0.84633 0.81604 0.77179 1.43530 1.07565 1.12504 1.76425 1.90966 1.34407 1.62559 1.47945 1.70241 1.27155 1.02806 1.12946 1.19636 0.91723 0.91159 1.06532 1.20435 1.00285 0.87899 1.00244 1.20732 0.92494 0.97100 0.96738 1.20168 0.99841 0.90068 1.11051 0.91630 0.85121 0.86914 0.83660 0.84542 0.75991 0.74966 0.84038 0.86446 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.94 13.67 55.48 0.76 -23.18 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.39 29.55 -169.99 -5.02 14.37 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.39 -10.35 9.48 30.88 0.29 -10.06 16 8 H 0.10 2.26 5.19 -52.49 -0.27 1.99 16 9 O -0.17 -4.47 9.75 0.26 0.00 -4.47 16 10 C 0.16 3.66 6.65 -39.01 -0.26 3.40 16 11 C -0.24 -4.69 9.15 -39.44 -0.36 -5.05 16 12 C -0.05 -0.79 9.41 -39.28 -0.37 -1.16 16 13 C -0.17 -2.71 5.88 -104.85 -0.62 -3.32 16 14 C 0.01 0.08 5.87 -104.93 -0.62 -0.54 16 15 C -0.08 -0.91 9.36 -39.54 -0.37 -1.28 16 16 C -0.09 -0.96 9.99 -39.95 -0.40 -1.36 16 17 C 0.01 0.07 7.43 -38.39 -0.29 -0.22 16 18 O -0.21 -2.31 10.49 2.58 0.03 -2.28 16 19 C 0.18 2.21 8.02 -14.08 -0.11 2.09 16 20 C 0.63 6.48 8.10 -12.30 -0.10 6.38 16 21 N -0.83 -4.06 8.87 30.55 0.27 -3.79 16 22 O -0.49 -6.84 17.89 5.32 0.10 -6.74 16 23 N -0.40 -6.09 11.24 -9.41 -0.11 -6.20 16 24 C 0.02 0.35 7.21 -85.02 -0.61 -0.27 16 25 C -0.07 -0.99 9.48 -38.82 -0.37 -1.36 16 26 C -0.05 -0.89 9.41 -39.28 -0.37 -1.26 16 27 C -0.19 -3.81 9.98 -39.44 -0.39 -4.21 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.13 2.56 5.62 -52.49 -0.30 2.27 16 30 H 0.11 1.46 6.17 -52.48 -0.32 1.13 16 31 H 0.15 1.34 6.16 -52.49 -0.32 1.01 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.41 1.10 8.56 -40.82 -0.35 0.75 16 34 H 0.42 1.12 8.93 -40.82 -0.36 0.75 16 35 H 0.14 1.90 6.18 -52.49 -0.32 1.58 16 36 H 0.12 1.68 6.18 -52.49 -0.32 1.35 16 37 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 331.14 15.07 4.99 4.99 Total: -1.00 -32.96 331.14 -6.58 -39.54 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -2.56 Total: 4.99 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -5.04 Total: -17.23 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.92 Total: -33.16 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.12 Total: -13.49 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.96 -6.58 -39.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.531 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds