Wall clock time and date at job start Tue Mar 31 2020 13:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86810 * 119.99628 * 2 1 4 4 H 1.48503 * 109.46952 * 239.99885 * 3 2 1 5 5 H 1.48493 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47039 * 120.00092 * 3 2 1 7 7 C 1.38630 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00034 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99721 * 359.97438 * 7 2 1 10 10 C 1.35712 * 116.99497 * 185.06004 * 9 7 2 11 11 C 1.38995 * 119.94879 * 354.45075 * 10 9 7 12 12 C 1.37835 * 120.05913 * 180.02562 * 11 10 9 13 13 C 1.39468 * 119.94436 * 359.97438 * 12 11 10 14 14 C 1.48242 * 120.06049 * 179.97438 * 13 12 11 15 15 C 1.39547 * 120.16771 * 294.73118 * 14 13 12 16 16 F 1.35105 * 120.05710 * 359.97167 * 15 14 13 17 17 C 1.38242 * 119.87923 * 179.73904 * 15 14 13 18 18 C 1.38345 * 120.21281 * 0.50915 * 17 15 14 19 19 C 1.38217 * 120.33411 * 359.76582 * 18 17 15 20 20 C 1.38564 * 120.12189 * 359.97438 * 19 18 17 21 21 O 1.35850 * 120.11015 * 179.97438 * 20 19 18 22 22 C 1.42897 * 116.99871 * 0.02562 * 21 20 19 23 23 F 1.39895 * 109.47243 * 300.00300 * 22 21 20 24 24 F 1.39906 * 109.47057 * 60.00185 * 22 21 20 25 25 C 1.39470 * 119.88436 * 0.02562 * 13 12 11 26 26 C 1.37839 * 119.94679 * 359.97438 * 25 13 12 27 27 H 0.96998 * 120.00735 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.96919 * 0.02562 * 11 10 9 29 29 H 1.07996 * 120.02886 * 179.70493 * 12 11 10 30 30 H 1.08001 * 119.88897 * 180.22947 * 17 15 14 31 31 H 1.07999 * 119.83620 * 179.74357 * 18 17 15 32 32 H 1.08005 * 119.93657 * 179.97438 * 19 18 17 33 33 H 1.08995 * 109.46999 * 180.02562 * 22 21 20 34 34 H 1.08007 * 120.02633 * 179.97438 * 25 13 12 35 35 H 1.07998 * 119.96987 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6179 0.0000 4 1 3.1033 1.6966 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6966 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0888 -1.2005 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0700 -3.5038 0.1056 11 6 3.4582 -3.4356 0.0916 12 6 4.2072 -4.5878 0.1987 13 6 3.5710 -5.8228 0.3217 14 6 4.3739 -7.0636 0.4365 15 6 5.1714 -7.4839 -0.6288 16 9 5.2134 -6.7606 -1.7691 17 6 5.9219 -8.6391 -0.5133 18 6 5.8768 -9.3851 0.6509 19 6 5.0856 -8.9801 1.7093 20 6 4.3318 -7.8216 1.6106 21 8 3.5538 -7.4240 2.6509 22 6 3.5607 -8.2482 3.8182 23 9 3.1157 -9.5320 3.4851 24 9 4.8612 -8.3232 4.3285 25 6 2.1779 -5.8885 0.3355 26 6 1.4334 -4.7334 0.2281 27 1 -0.4851 0.8400 -0.0004 28 1 3.9505 -2.4790 -0.0033 29 1 5.2857 -4.5347 0.1829 30 1 6.5420 -8.9625 -1.3363 31 1 6.4625 -10.2888 0.7330 32 1 5.0549 -9.5676 2.6151 33 1 2.8991 -7.8185 4.5702 34 1 1.6828 -6.8437 0.4303 35 1 0.3547 -4.7838 0.2392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:41 Heat of formation + Delta-G solvation = -162.136482 kcal Electronic energy + Delta-G solvation = -26527.316481 eV Core-core repulsion = 22041.665794 eV Total energy + Delta-G solvation = -4485.650687 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.56801 -48.77350 -47.54987 -40.15330 -38.87897 -37.39004 -36.39240 -32.51880 -31.63074 -30.28104 -30.09950 -27.89816 -26.31614 -25.39031 -23.15265 -22.61710 -21.80337 -20.77259 -19.25455 -18.43400 -18.12913 -17.97797 -17.14764 -16.83132 -16.45491 -15.85827 -15.57920 -15.02901 -14.68601 -14.63924 -14.51882 -14.37119 -14.06488 -13.85900 -13.81198 -13.61949 -13.50543 -12.96297 -12.80330 -12.67412 -12.59160 -11.95511 -11.81527 -11.74773 -11.65661 -11.26068 -10.84504 -10.77242 -10.67058 -10.46993 -9.42095 -8.95026 -8.71787 -8.57219 -8.22193 -7.17369 -6.49031 -4.07272 0.98884 1.06724 2.21517 2.24169 2.36833 3.11968 3.12664 3.15637 3.23407 3.41739 3.94045 4.10137 4.26183 4.42646 4.46658 4.61868 4.77679 4.92596 5.05890 5.09092 5.17241 5.25178 5.64224 5.72329 5.82001 5.92620 5.99583 6.13256 6.17743 6.36006 6.46087 6.63548 6.82710 6.90086 7.03813 7.21575 7.31135 7.39549 7.76259 7.95959 8.96313 9.65108 10.68507 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.003291 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.965653 B = 8506.610848 C = 9344.242514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.162 3.838 11 C -0.234 4.234 12 C -0.044 4.044 13 C -0.159 4.159 14 C -0.060 4.060 15 C 0.135 3.865 16 F -0.125 7.125 17 C -0.179 4.179 18 C -0.066 4.066 19 C -0.204 4.204 20 C 0.137 3.863 21 O -0.299 6.299 22 C 0.409 3.591 23 F -0.200 7.200 24 F -0.200 7.200 25 C -0.043 4.043 26 C -0.194 4.194 27 H 0.271 0.729 28 H 0.130 0.870 29 H 0.106 0.894 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.183 0.817 34 H 0.111 0.889 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.766 -17.644 5.459 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.075 6.075 10 C 0.107 3.893 11 C -0.254 4.254 12 C -0.062 4.062 13 C -0.160 4.160 14 C -0.061 4.061 15 C 0.116 3.884 16 F -0.103 7.103 17 C -0.198 4.198 18 C -0.084 4.084 19 C -0.222 4.222 20 C 0.093 3.907 21 O -0.216 6.216 22 C 0.319 3.681 23 F -0.182 7.182 24 F -0.182 7.182 25 C -0.061 4.061 26 C -0.213 4.213 27 H 0.081 0.919 28 H 0.147 0.853 29 H 0.124 0.876 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.199 0.801 34 H 0.129 0.871 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.210 -17.237 5.409 20.278 hybrid contribution 0.712 0.616 -0.066 0.943 sum 9.922 -16.622 5.343 20.082 Atomic orbital electron populations 1.70028 1.05991 1.27922 1.45544 1.25300 0.95846 0.98884 0.96376 0.85775 0.78728 0.79650 0.79274 1.19419 1.20227 1.19428 1.21315 0.91882 0.80773 1.52928 0.88961 1.83962 1.34476 1.11532 1.77556 1.19465 0.90234 0.87995 0.91575 1.21051 0.93709 0.98767 1.11829 1.20685 0.98187 0.91215 0.96133 1.17768 0.92486 0.90315 1.15421 1.18060 1.00337 0.96939 0.90787 1.17448 0.97729 0.90913 0.82327 1.91539 1.94892 1.76825 1.47046 1.21038 1.02896 0.95596 1.00278 1.20700 0.97141 0.98970 0.91571 1.21487 1.01441 0.97469 1.01833 1.18590 0.91848 0.93321 0.86940 1.86766 1.63163 1.49158 1.22517 1.23479 0.81076 0.76904 0.86648 1.93087 1.89116 1.42847 1.93169 1.93091 1.41858 1.96051 1.87193 1.20540 0.92021 0.96774 0.96770 1.20099 0.99562 0.90070 1.11560 0.91869 0.85275 0.87579 0.84497 0.84690 0.84578 0.80055 0.87124 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.00 13.67 55.48 0.76 -24.25 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.91 9.48 30.88 0.29 -10.62 16 8 H 0.09 2.37 5.19 -52.49 -0.27 2.10 16 9 O -0.17 -4.90 9.75 0.21 0.00 -4.90 16 10 C 0.16 3.93 6.65 -39.02 -0.26 3.67 16 11 C -0.23 -5.18 9.15 -39.45 -0.36 -5.54 16 12 C -0.04 -0.86 9.57 -39.27 -0.38 -1.23 16 13 C -0.16 -2.94 4.63 -104.87 -0.49 -3.43 16 14 C -0.06 -0.95 5.33 -104.71 -0.56 -1.51 16 15 C 0.14 1.98 7.24 -39.09 -0.28 1.70 16 16 F -0.12 -2.00 16.68 2.25 0.04 -1.96 16 17 C -0.18 -2.04 10.01 -39.54 -0.40 -2.43 16 18 C -0.07 -0.67 10.03 -39.55 -0.40 -1.07 16 19 C -0.20 -2.39 8.25 -39.47 -0.33 -2.72 16 20 C 0.14 1.93 6.45 -38.87 -0.25 1.68 16 21 O -0.30 -4.01 9.64 -19.27 -0.19 -4.20 16 22 C 0.41 3.78 5.98 101.05 0.60 4.39 16 23 F -0.20 -1.99 15.58 2.25 0.04 -1.95 16 24 F -0.20 -2.04 15.59 2.25 0.04 -2.00 16 25 C -0.04 -0.80 9.44 -39.27 -0.37 -1.17 16 26 C -0.19 -4.13 9.98 -39.45 -0.39 -4.53 16 27 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.13 2.83 5.62 -52.49 -0.30 2.53 16 29 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.14 1.43 5.09 -52.48 -0.27 1.16 16 33 H 0.18 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 35 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 322.12 15.07 4.85 4.85 Total: -1.00 -31.85 322.12 -5.65 -37.50 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -2.51 Total: 3.38 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -3.66 Total: -21.80 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.76 Total: -24.25 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.18 Total: -9.10 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.11 Total: -5.92 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.85 -5.65 -37.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.634 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds