Wall clock time and date at job start Tue Mar 31 2020 13:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86810 * 119.99628 * 2 1 4 4 H 1.48503 * 109.46952 * 239.99885 * 3 2 1 5 5 H 1.48493 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47039 * 120.00092 * 3 2 1 7 7 C 1.38630 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00034 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99721 * 359.97438 * 7 2 1 10 10 C 1.35712 * 116.99497 * 185.06004 * 9 7 2 11 11 C 1.38995 * 119.94879 * 354.45075 * 10 9 7 12 12 C 1.37835 * 120.05913 * 180.02562 * 11 10 9 13 13 C 1.39468 * 119.94436 * 359.97438 * 12 11 10 14 14 C 1.48242 * 120.06049 * 179.97438 * 13 12 11 15 15 C 1.39547 * 120.16771 * 294.73118 * 14 13 12 16 16 F 1.35105 * 120.05710 * 359.97167 * 15 14 13 17 17 C 1.38242 * 119.87923 * 179.73904 * 15 14 13 18 18 C 1.38345 * 120.21281 * 0.50915 * 17 15 14 19 19 C 1.38217 * 120.33411 * 359.76582 * 18 17 15 20 20 C 1.38564 * 120.12189 * 359.97438 * 19 18 17 21 21 O 1.35850 * 120.11015 * 179.97438 * 20 19 18 22 22 C 1.42897 * 116.99871 * 0.02562 * 21 20 19 23 23 F 1.39895 * 109.47243 * 300.00300 * 22 21 20 24 24 F 1.39906 * 109.47057 * 60.00185 * 22 21 20 25 25 C 1.39470 * 119.88436 * 0.02562 * 13 12 11 26 26 C 1.37839 * 119.94679 * 359.97438 * 25 13 12 27 27 H 0.96998 * 120.00735 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.96919 * 0.02562 * 11 10 9 29 29 H 1.07996 * 120.02886 * 179.70493 * 12 11 10 30 30 H 1.08001 * 119.88897 * 180.22947 * 17 15 14 31 31 H 1.07999 * 119.83620 * 179.74357 * 18 17 15 32 32 H 1.08005 * 119.93657 * 179.97438 * 19 18 17 33 33 H 1.08995 * 109.46999 * 180.02562 * 22 21 20 34 34 H 1.08007 * 120.02633 * 179.97438 * 25 13 12 35 35 H 1.07998 * 119.96987 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6179 0.0000 4 1 3.1033 1.6966 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6966 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0888 -1.2005 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0700 -3.5038 0.1056 11 6 3.4582 -3.4356 0.0916 12 6 4.2072 -4.5878 0.1987 13 6 3.5710 -5.8228 0.3217 14 6 4.3739 -7.0636 0.4365 15 6 5.1714 -7.4839 -0.6288 16 9 5.2134 -6.7606 -1.7691 17 6 5.9219 -8.6391 -0.5133 18 6 5.8768 -9.3851 0.6509 19 6 5.0856 -8.9801 1.7093 20 6 4.3318 -7.8216 1.6106 21 8 3.5538 -7.4240 2.6509 22 6 3.5607 -8.2482 3.8182 23 9 3.1157 -9.5320 3.4851 24 9 4.8612 -8.3232 4.3285 25 6 2.1779 -5.8885 0.3355 26 6 1.4334 -4.7334 0.2281 27 1 -0.4851 0.8400 -0.0004 28 1 3.9505 -2.4790 -0.0033 29 1 5.2857 -4.5347 0.1829 30 1 6.5420 -8.9625 -1.3363 31 1 6.4625 -10.2888 0.7330 32 1 5.0549 -9.5676 2.6151 33 1 2.8991 -7.8185 4.5702 34 1 1.6828 -6.8437 0.4303 35 1 0.3547 -4.7838 0.2392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243591934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:40 Heat of formation + Delta-G solvation = -180.529339 kcal Electronic energy + Delta-G solvation = -26528.114055 eV Core-core repulsion = 22041.665794 eV Total energy + Delta-G solvation = -4486.448261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.31777 -49.93633 -48.30010 -41.26619 -40.55128 -38.50332 -37.95320 -34.40392 -33.01416 -31.90720 -31.09968 -29.35531 -27.41804 -27.03625 -24.39510 -23.80637 -23.26094 -22.24492 -20.19759 -19.89445 -19.29079 -18.89276 -18.84754 -17.79731 -17.69187 -16.92672 -16.78695 -16.33985 -16.15419 -15.99239 -15.73799 -15.54882 -15.54649 -15.16415 -14.88749 -14.68929 -14.62889 -14.52799 -14.21535 -13.72794 -13.66367 -13.59180 -13.21525 -13.07577 -12.73946 -12.62211 -12.45116 -12.31722 -12.15794 -12.02687 -11.27408 -10.82338 -9.92237 -9.87920 -9.56753 -8.89193 -8.48838 -6.17115 -0.07165 0.09269 0.54099 0.63918 1.35186 1.45617 1.51356 1.53626 2.17013 2.43392 2.50666 2.76389 3.10776 3.26270 3.42167 3.47612 3.62435 3.70038 3.87145 3.94502 4.00719 4.07688 4.12833 4.27181 4.48612 4.65911 4.77350 4.94585 4.99177 5.07331 5.12172 5.21009 5.23242 5.47445 5.51072 5.63367 5.65058 5.94883 5.99510 6.10081 6.95322 7.73202 8.73675 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.003291 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.965653 B = 8506.610848 C = 9344.242514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.019 4.019 3 Si 1.018 2.982 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.418 4.418 8 H 0.102 0.898 9 O -0.225 6.225 10 C 0.124 3.876 11 C -0.239 4.239 12 C -0.050 4.050 13 C -0.130 4.130 14 C -0.098 4.098 15 C 0.120 3.880 16 F -0.140 7.140 17 C -0.171 4.171 18 C -0.045 4.045 19 C -0.204 4.204 20 C 0.132 3.868 21 O -0.324 6.324 22 C 0.407 3.593 23 F -0.203 7.203 24 F -0.205 7.205 25 C -0.040 4.040 26 C -0.198 4.198 27 H 0.274 0.726 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.166 0.834 31 H 0.178 0.822 32 H 0.151 0.849 33 H 0.226 0.774 34 H 0.139 0.861 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.467 -20.438 6.236 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.217 4.217 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.119 0.881 9 O -0.131 6.131 10 C 0.073 3.927 11 C -0.258 4.258 12 C -0.068 4.068 13 C -0.131 4.131 14 C -0.100 4.100 15 C 0.100 3.900 16 F -0.119 7.119 17 C -0.189 4.189 18 C -0.063 4.063 19 C -0.222 4.222 20 C 0.088 3.912 21 O -0.241 6.241 22 C 0.318 3.682 23 F -0.185 7.185 24 F -0.187 7.187 25 C -0.058 4.058 26 C -0.217 4.217 27 H 0.083 0.917 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.184 0.816 31 H 0.195 0.805 32 H 0.168 0.832 33 H 0.241 0.759 34 H 0.157 0.843 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.944 -20.096 6.194 24.185 hybrid contribution 0.051 0.988 -0.236 1.017 sum 11.994 -19.109 5.959 23.335 Atomic orbital electron populations 1.70171 1.07997 1.29011 1.48338 1.26577 0.96838 1.02668 0.95606 0.84665 0.77449 0.74267 0.79956 1.18223 1.19454 1.18112 1.21803 0.92593 0.81390 1.53558 0.88079 1.83934 1.35856 1.12538 1.80730 1.19943 0.91333 0.87994 0.93391 1.21130 0.93139 0.99655 1.11856 1.20951 0.99238 0.90816 0.95821 1.18150 0.92739 0.91421 1.10772 1.17987 1.02342 0.96858 0.92808 1.17746 0.98466 0.92099 0.81644 1.91504 1.95090 1.77439 1.47835 1.21380 1.01941 0.94015 1.01584 1.21235 0.95609 0.99446 0.90024 1.21757 1.00919 0.96605 1.02953 1.18701 0.92199 0.93667 0.86648 1.86740 1.63223 1.50706 1.23421 1.24167 0.81445 0.76609 0.85984 1.93078 1.89087 1.43152 1.93194 1.93078 1.42517 1.96047 1.87035 1.20848 0.92391 0.96894 0.95628 1.20333 1.00082 0.90071 1.11224 0.91693 0.85809 0.85381 0.81622 0.80471 0.83166 0.75866 0.84304 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.24 13.67 21.61 0.30 -55.94 16 2 C -0.02 -1.07 5.49 84.83 0.47 -0.61 16 3 Si 1.02 42.86 29.55 68.60 2.03 44.89 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.42 -24.50 9.48 67.91 0.64 -23.85 16 8 H 0.10 5.46 5.19 -2.91 -0.02 5.44 16 9 O -0.22 -13.64 9.75 -22.16 -0.22 -13.85 16 10 C 0.12 6.36 6.65 22.63 0.15 6.51 16 11 C -0.24 -10.93 9.15 22.36 0.20 -10.72 16 12 C -0.05 -1.95 9.57 22.47 0.22 -1.74 16 13 C -0.13 -4.71 4.63 -20.02 -0.09 -4.80 16 14 C -0.10 -2.94 5.33 -19.92 -0.11 -3.04 16 15 C 0.12 3.21 7.24 22.59 0.16 3.37 16 16 F -0.14 -4.31 16.68 44.97 0.75 -3.56 16 17 C -0.17 -3.16 10.01 22.30 0.22 -2.93 16 18 C -0.05 -0.70 10.03 22.29 0.22 -0.47 16 19 C -0.20 -3.98 8.25 22.34 0.18 -3.79 16 20 C 0.13 3.37 6.45 22.73 0.15 3.52 16 21 O -0.32 -7.94 9.64 -91.87 -0.89 -8.82 16 22 C 0.41 6.34 5.98 113.37 0.68 7.02 16 23 F -0.20 -3.42 15.58 44.97 0.70 -2.72 16 24 F -0.20 -3.57 15.59 44.97 0.70 -2.87 16 25 C -0.04 -1.47 9.44 22.47 0.21 -1.26 16 26 C -0.20 -8.73 9.98 22.36 0.22 -8.51 16 27 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 28 H 0.12 5.68 5.62 -2.91 -0.02 5.66 16 29 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 30 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.15 2.52 5.09 -2.91 -0.01 2.50 16 33 H 0.23 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.12 5.17 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -74.64 322.12 8.08 -66.56 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 1.17 Total: 17.61 kcal Atomic # 6 Polarization: -44.83 SS G_CDS: 3.54 Total: -41.29 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.30 Total: -55.94 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -1.10 Total: -22.68 kcal Atomic # 9 Polarization: -11.29 SS G_CDS: 2.15 Total: -9.14 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -74.64 8.08 -66.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.969 kcal (2) G-P(sol) polarization free energy of solvation -74.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds