Wall clock time and date at job start Tue Mar 31 2020 14:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99940 * 2 1 4 4 H 1.48503 * 109.47336 * 276.24153 * 3 2 1 5 5 H 1.48506 * 109.47070 * 36.24184 * 3 2 1 6 6 H 1.48493 * 109.47174 * 156.24027 * 3 2 1 7 7 C 1.39977 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99795 * 340.44925 * 7 2 1 9 9 C 1.40998 * 119.99970 * 160.45534 * 7 2 1 10 10 C 1.41349 * 120.54456 * 154.60393 * 9 7 2 11 11 C 1.36526 * 118.42463 * 179.71972 * 10 9 7 12 12 C 1.40034 * 119.46233 * 0.48235 * 11 10 9 13 13 C 1.47720 * 119.45687 * 179.78724 * 12 11 10 14 14 C 1.39647 * 120.17385 * 356.03793 * 13 12 11 15 15 C 1.38240 * 119.87363 * 179.97438 * 14 13 12 16 16 O 1.35986 * 119.89011 * 180.02562 * 15 14 13 17 17 C 1.42906 * 117.00142 * 179.97438 * 16 15 14 18 18 F 1.39896 * 109.46684 * 60.00958 * 17 16 15 19 19 F 1.39902 * 109.47134 * 180.02562 * 17 16 15 20 20 F 1.39892 * 109.47329 * 300.00955 * 17 16 15 21 21 C 1.39020 * 120.22103 * 0.02562 * 15 14 13 22 22 C 1.38060 * 120.34797 * 359.97438 * 21 15 14 23 23 C 1.38798 * 120.11943 * 0.02562 * 22 21 15 24 24 N 1.39359 * 120.10744 * 180.02562 * 23 22 21 25 25 N 1.33104 * 121.07802 * 359.50425 * 12 11 10 26 26 C 1.31245 * 121.71064 * 0.25736 * 25 12 11 27 27 H 0.97005 * 119.99638 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.78943 * 359.97438 * 10 9 7 29 29 H 1.07999 * 120.26915 * 180.26336 * 11 10 9 30 30 H 1.07997 * 120.05927 * 0.25801 * 14 13 12 31 31 H 1.08003 * 119.82225 * 179.97438 * 21 15 14 32 32 H 1.08001 * 119.93948 * 180.02562 * 22 21 15 33 33 H 0.96998 * 120.00003 * 153.94519 * 24 23 22 34 34 H 0.97001 * 120.00514 * 333.95066 * 24 23 22 35 35 H 1.08008 * 119.79409 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3580 2.1226 -1.3918 5 1 1.5118 2.6110 0.8278 6 1 3.5995 1.4057 0.5641 7 6 2.0082 -1.2123 -0.0005 8 1 1.5148 -2.1207 0.3121 9 6 3.3572 -1.2473 -0.4091 10 6 4.2232 -2.2620 0.0583 11 6 5.5197 -2.2579 -0.3696 12 6 5.9536 -1.2527 -1.2427 13 6 7.3577 -1.2457 -1.7018 14 6 8.2637 -2.1844 -1.2038 15 6 9.5760 -2.1725 -1.6382 16 8 10.4585 -3.0868 -1.1539 17 6 11.7987 -3.0187 -1.6453 18 9 12.3454 -1.7685 -1.3367 19 9 12.5662 -4.0241 -1.0477 20 9 11.7961 -3.1969 -3.0329 21 6 9.9966 -1.2290 -2.5685 22 6 9.1086 -0.2968 -3.0669 23 6 7.7877 -0.2957 -2.6407 24 7 6.8914 0.6451 -3.1443 25 7 5.1203 -0.3069 -1.6700 26 6 3.8644 -0.2713 -1.2907 27 1 -0.4850 0.8401 0.0004 28 1 3.8667 -3.0248 0.7346 29 1 6.2059 -3.0216 -0.0346 30 1 7.9386 -2.9211 -0.4841 31 1 11.0235 -1.2253 -2.9031 32 1 9.4424 0.4330 -3.7898 33 1 5.9422 0.4468 -3.1674 34 1 7.2167 1.4982 -3.4720 35 1 3.2153 0.5108 -1.6563 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244182217.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:35 Heat of formation + Delta-G solvation = -134.520888 kcal Electronic energy + Delta-G solvation = -26446.204648 eV Core-core repulsion = 21994.044214 eV Total energy + Delta-G solvation = -4452.160434 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.43180 -48.17244 -48.01244 -40.05187 -38.91751 -37.46820 -34.29160 -33.59149 -32.04698 -31.38277 -29.66534 -28.12292 -25.66002 -25.50711 -23.15923 -22.53794 -21.57742 -21.00181 -19.21575 -19.12950 -18.99336 -17.91920 -16.82627 -16.57654 -16.38720 -15.65993 -15.13762 -14.92303 -14.91187 -14.73215 -14.48566 -14.38978 -14.35889 -14.23283 -14.09785 -13.92347 -13.49673 -13.15240 -13.13254 -12.81236 -12.55255 -12.24694 -12.04882 -11.82633 -11.25342 -11.15164 -10.88768 -10.70562 -10.17581 -9.74579 -9.62728 -9.01671 -8.78627 -8.34851 -7.83840 -7.37084 -6.88479 -4.78215 1.25167 1.61986 1.74885 2.40068 2.47804 2.90015 2.90632 3.02411 3.10382 3.67672 3.83685 3.86321 4.06856 4.41115 4.53040 4.92766 4.97840 5.19711 5.24059 5.35902 5.63602 5.77709 6.05216 6.12750 6.17397 6.22277 6.37248 6.46931 6.53013 6.66070 6.74405 6.93049 7.13287 7.28258 7.35162 7.66214 7.87171 8.11078 8.18202 8.31006 8.59142 9.12843 9.61621 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.027782 B = 0.002983 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.609402 B = 9385.239826 C =10000.885059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.079 3.921 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.407 4.407 8 H 0.098 0.902 9 C 0.045 3.955 10 C -0.181 4.181 11 C -0.101 4.101 12 C 0.001 3.999 13 C -0.025 4.025 14 C -0.092 4.092 15 C 0.041 3.959 16 O -0.311 6.311 17 C 0.603 3.397 18 F -0.170 7.170 19 F -0.139 7.139 20 F -0.169 7.169 21 C -0.162 4.162 22 C -0.162 4.162 23 C 0.213 3.787 24 N -0.865 5.865 25 N -0.438 5.438 26 C -0.032 4.032 27 H 0.294 0.706 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.416 0.584 34 H 0.382 0.618 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.487 -0.790 -3.560 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.145 4.145 3 Si 0.742 3.258 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.166 1.166 7 C -0.434 4.434 8 H 0.116 0.884 9 C 0.039 3.961 10 C -0.206 4.206 11 C -0.121 4.121 12 C -0.132 4.132 13 C -0.030 4.030 14 C -0.112 4.112 15 C -0.002 4.002 16 O -0.232 6.232 17 C 0.511 3.489 18 F -0.152 7.152 19 F -0.121 7.121 20 F -0.151 7.151 21 C -0.182 4.182 22 C -0.185 4.185 23 C 0.105 3.895 24 N -0.413 5.413 25 N -0.146 5.146 26 C -0.197 4.197 27 H 0.105 0.895 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.258 0.742 34 H 0.209 0.791 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.449 -0.273 -3.966 15.952 hybrid contribution -0.004 0.345 0.379 0.513 sum 15.445 0.073 -3.588 15.856 Atomic orbital electron populations 1.69676 1.08303 1.31347 1.30524 1.26373 0.94905 1.02414 0.90767 0.86251 0.81262 0.78975 0.79360 1.18861 1.21183 1.16609 1.19622 0.93299 0.96512 1.33994 0.88398 1.18620 0.93743 0.92579 0.91133 1.21004 0.93064 1.02425 1.04069 1.21254 0.96263 0.97567 0.97059 1.18529 0.91592 0.97324 1.05734 1.18031 0.92255 0.96756 0.95955 1.20075 0.88721 1.00387 1.02052 1.18151 0.88867 0.92487 1.00679 1.86373 1.16292 1.55123 1.65371 1.19368 0.80498 0.74326 0.74666 1.93277 1.86524 1.42608 1.92754 1.93272 1.73822 1.60854 1.84141 1.93277 1.96222 1.95026 1.30622 1.21054 1.00213 0.97283 0.99660 1.20372 0.92774 1.01856 1.03540 1.17815 0.89655 0.90762 0.91255 1.43141 1.10939 1.16862 1.70371 1.66265 1.04025 1.21735 1.22586 1.22370 0.91797 1.02667 1.02878 0.89540 0.86928 0.87195 0.84742 0.85946 0.85889 0.74236 0.79127 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.46 13.93 55.55 0.77 -17.69 16 2 C 0.08 1.85 5.41 -17.33 -0.09 1.75 16 3 Si 0.92 18.89 24.44 -169.99 -4.15 14.73 16 4 H -0.26 -5.22 6.70 56.52 0.38 -4.85 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.24 -5.33 6.75 56.52 0.38 -4.95 16 7 C -0.41 -9.86 9.59 -37.89 -0.36 -10.23 16 8 H 0.10 2.45 8.06 -52.48 -0.42 2.03 16 9 C 0.04 1.04 5.22 -106.64 -0.56 0.48 16 10 C -0.18 -3.86 9.87 -39.02 -0.39 -4.25 16 11 C -0.10 -2.03 9.38 -39.53 -0.37 -2.40 16 12 C 0.00 0.03 6.73 -82.77 -0.56 -0.53 16 13 C -0.02 -0.46 5.89 -104.72 -0.62 -1.07 16 14 C -0.09 -1.53 9.34 -39.05 -0.36 -1.89 16 15 C 0.04 0.64 6.47 -39.29 -0.25 0.38 16 16 O -0.31 -4.45 10.37 -19.70 -0.20 -4.66 16 17 C 0.60 7.34 3.42 101.05 0.35 7.69 16 18 F -0.17 -2.04 15.55 2.25 0.04 -2.00 16 19 F -0.14 -1.57 17.53 2.25 0.04 -1.54 16 20 F -0.17 -2.03 15.55 2.25 0.04 -1.99 16 21 C -0.16 -2.35 8.25 -39.36 -0.32 -2.68 16 22 C -0.16 -2.37 9.92 -39.44 -0.39 -2.76 16 23 C 0.21 3.60 6.76 -83.45 -0.56 3.04 16 24 N -0.86 -13.76 8.42 32.60 0.27 -13.48 16 25 N -0.44 -9.51 6.66 -9.12 -0.06 -9.57 16 26 C -0.03 -0.74 8.34 -16.77 -0.14 -0.88 16 27 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 28 H 0.11 2.20 8.06 -52.49 -0.42 1.77 16 29 H 0.11 1.86 6.17 -52.49 -0.32 1.54 16 30 H 0.13 2.06 6.17 -52.49 -0.32 1.73 16 31 H 0.12 1.56 5.06 -52.48 -0.27 1.30 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.42 7.36 5.80 -40.82 -0.24 7.12 16 34 H 0.38 4.91 8.91 -40.82 -0.36 4.55 16 35 H 0.13 2.91 4.26 -52.48 -0.22 2.69 16 LS Contribution 306.45 15.07 4.62 4.62 Total: -1.00 -24.81 306.45 -5.46 -30.28 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -2.18 Total: 14.64 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -4.64 Total: -13.34 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.99 Total: -40.74 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.20 Total: -4.66 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.11 Total: -5.53 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.15 Total: 14.73 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -24.81 -5.46 -30.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244182217.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.245 kcal (2) G-P(sol) polarization free energy of solvation -24.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds