Wall clock time and date at job start Tue Mar 31 2020 14:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99940 * 2 1 4 4 H 1.48503 * 109.47336 * 276.24153 * 3 2 1 5 5 H 1.48506 * 109.47070 * 36.24184 * 3 2 1 6 6 H 1.48493 * 109.47174 * 156.24027 * 3 2 1 7 7 C 1.39977 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99795 * 340.44925 * 7 2 1 9 9 C 1.40998 * 119.99970 * 160.45534 * 7 2 1 10 10 C 1.41349 * 120.54456 * 154.60393 * 9 7 2 11 11 C 1.36526 * 118.42463 * 179.71972 * 10 9 7 12 12 C 1.40034 * 119.46233 * 0.48235 * 11 10 9 13 13 C 1.47720 * 119.45687 * 179.78724 * 12 11 10 14 14 C 1.39647 * 120.17385 * 356.03793 * 13 12 11 15 15 C 1.38240 * 119.87363 * 179.97438 * 14 13 12 16 16 O 1.35986 * 119.89011 * 180.02562 * 15 14 13 17 17 C 1.42906 * 117.00142 * 179.97438 * 16 15 14 18 18 F 1.39896 * 109.46684 * 60.00958 * 17 16 15 19 19 F 1.39902 * 109.47134 * 180.02562 * 17 16 15 20 20 F 1.39892 * 109.47329 * 300.00955 * 17 16 15 21 21 C 1.39020 * 120.22103 * 0.02562 * 15 14 13 22 22 C 1.38060 * 120.34797 * 359.97438 * 21 15 14 23 23 C 1.38798 * 120.11943 * 0.02562 * 22 21 15 24 24 N 1.39359 * 120.10744 * 180.02562 * 23 22 21 25 25 N 1.33104 * 121.07802 * 359.50425 * 12 11 10 26 26 C 1.31245 * 121.71064 * 0.25736 * 25 12 11 27 27 H 0.97005 * 119.99638 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.78943 * 359.97438 * 10 9 7 29 29 H 1.07999 * 120.26915 * 180.26336 * 11 10 9 30 30 H 1.07997 * 120.05927 * 0.25801 * 14 13 12 31 31 H 1.08003 * 119.82225 * 179.97438 * 21 15 14 32 32 H 1.08001 * 119.93948 * 180.02562 * 22 21 15 33 33 H 0.96998 * 120.00003 * 153.94519 * 24 23 22 34 34 H 0.97001 * 120.00514 * 333.95066 * 24 23 22 35 35 H 1.08008 * 119.79409 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3580 2.1226 -1.3918 5 1 1.5118 2.6110 0.8278 6 1 3.5995 1.4057 0.5641 7 6 2.0082 -1.2123 -0.0005 8 1 1.5148 -2.1207 0.3121 9 6 3.3572 -1.2473 -0.4091 10 6 4.2232 -2.2620 0.0583 11 6 5.5197 -2.2579 -0.3696 12 6 5.9536 -1.2527 -1.2427 13 6 7.3577 -1.2457 -1.7018 14 6 8.2637 -2.1844 -1.2038 15 6 9.5760 -2.1725 -1.6382 16 8 10.4585 -3.0868 -1.1539 17 6 11.7987 -3.0187 -1.6453 18 9 12.3454 -1.7685 -1.3367 19 9 12.5662 -4.0241 -1.0477 20 9 11.7961 -3.1969 -3.0329 21 6 9.9966 -1.2290 -2.5685 22 6 9.1086 -0.2968 -3.0669 23 6 7.7877 -0.2957 -2.6407 24 7 6.8914 0.6451 -3.1443 25 7 5.1203 -0.3069 -1.6700 26 6 3.8644 -0.2713 -1.2907 27 1 -0.4850 0.8401 0.0004 28 1 3.8667 -3.0248 0.7346 29 1 6.2059 -3.0216 -0.0346 30 1 7.9386 -2.9211 -0.4841 31 1 11.0235 -1.2253 -2.9031 32 1 9.4424 0.4330 -3.7898 33 1 5.9422 0.4468 -3.1674 34 1 7.2167 1.4982 -3.4720 35 1 3.2153 0.5108 -1.6563 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244182217.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:34 Heat of formation + Delta-G solvation = -148.525347 kcal Electronic energy + Delta-G solvation = -26446.811927 eV Core-core repulsion = 21994.044214 eV Total energy + Delta-G solvation = -4452.767713 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.38478 -49.10725 -48.96907 -41.34319 -40.40369 -38.77043 -35.97261 -34.86920 -33.58087 -33.00119 -31.13655 -29.40003 -27.16954 -26.62241 -24.67891 -24.00880 -22.92632 -22.43091 -20.40712 -20.09330 -20.05122 -19.62198 -18.15307 -17.85904 -17.78650 -17.03687 -16.40467 -16.31700 -16.13748 -15.86863 -15.70638 -15.45459 -15.38846 -15.30270 -15.25365 -15.08596 -14.96372 -14.67967 -14.60360 -14.10640 -14.04354 -13.54405 -13.50383 -13.25784 -12.97068 -12.78019 -12.42364 -12.11649 -11.82636 -11.32593 -10.95825 -10.53744 -10.38143 -9.99928 -9.34581 -9.09239 -8.20267 -6.56235 -0.12920 0.51316 0.59266 0.73570 0.87457 1.23767 1.38695 1.43795 1.88843 2.01289 2.42339 2.83536 2.85981 3.08398 3.28787 3.53625 3.60199 3.76068 3.86958 4.08112 4.28073 4.35495 4.44323 4.66973 4.71437 4.88245 4.93374 5.07133 5.14324 5.24101 5.31019 5.39022 5.61460 5.73020 5.93099 5.99719 6.08830 6.45083 6.56133 6.89159 7.28344 7.44327 7.96169 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.027782 B = 0.002983 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.609402 B = 9385.239826 C =10000.885059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.054 3.946 3 Si 0.965 3.035 4 H -0.251 1.251 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.447 4.447 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.185 4.185 11 C -0.107 4.107 12 C 0.015 3.985 13 C -0.064 4.064 14 C -0.087 4.087 15 C 0.035 3.965 16 O -0.318 6.318 17 C 0.608 3.392 18 F -0.166 7.166 19 F -0.133 7.133 20 F -0.166 7.166 21 C -0.149 4.149 22 C -0.154 4.154 23 C 0.206 3.794 24 N -0.864 5.864 25 N -0.443 5.443 26 C -0.048 4.048 27 H 0.302 0.698 28 H 0.125 0.875 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.408 0.592 34 H 0.397 0.603 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.006 -0.366 -4.523 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.166 4.166 3 Si 0.788 3.212 4 H -0.177 1.177 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.475 4.475 8 H 0.091 0.909 9 C 0.025 3.975 10 C -0.210 4.210 11 C -0.126 4.126 12 C -0.120 4.120 13 C -0.070 4.070 14 C -0.107 4.107 15 C -0.008 4.008 16 O -0.239 6.239 17 C 0.517 3.483 18 F -0.148 7.148 19 F -0.114 7.114 20 F -0.148 7.148 21 C -0.169 4.169 22 C -0.176 4.176 23 C 0.098 3.902 24 N -0.412 5.412 25 N -0.152 5.152 26 C -0.210 4.210 27 H 0.114 0.886 28 H 0.143 0.857 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.172 0.828 33 H 0.248 0.752 34 H 0.226 0.774 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 18.955 0.178 -4.943 19.589 hybrid contribution -0.625 0.066 0.570 0.848 sum 18.330 0.245 -4.373 18.846 Atomic orbital electron populations 1.69683 1.09075 1.32413 1.32755 1.26846 0.95338 1.04152 0.90265 0.85520 0.79084 0.76711 0.79843 1.17677 1.19705 1.18879 1.19524 0.94277 0.96318 1.37371 0.90949 1.18765 0.93714 0.93545 0.91492 1.21297 0.93583 1.02153 1.03967 1.21606 0.96167 0.98225 0.96649 1.19176 0.92711 0.96189 1.03955 1.18036 0.91355 0.99240 0.98359 1.20155 0.89084 0.99828 1.01619 1.18174 0.88828 0.92932 1.00869 1.86350 1.17110 1.54859 1.65581 1.19247 0.79786 0.74559 0.74725 1.93288 1.86351 1.42432 1.92746 1.93295 1.73444 1.60617 1.84065 1.93288 1.96152 1.95021 1.30332 1.21387 1.01148 0.96117 0.98239 1.20680 0.91533 1.02081 1.03349 1.18049 0.90696 0.90525 0.90978 1.43111 1.10461 1.17548 1.70106 1.66412 1.03652 1.22340 1.22806 1.22427 0.92481 1.02939 1.03178 0.88641 0.85689 0.83932 0.83863 0.83859 0.82816 0.75217 0.77399 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.40 13.93 21.83 0.30 -40.09 16 2 C 0.05 2.61 5.41 85.26 0.46 3.07 16 3 Si 0.96 39.72 24.44 68.60 1.68 41.40 16 4 H -0.25 -9.75 6.70 99.48 0.67 -9.08 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 6 H -0.26 -11.69 6.75 99.48 0.67 -11.01 16 7 C -0.45 -22.84 9.59 23.37 0.22 -22.61 16 8 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 9 C 0.03 1.42 5.22 -21.17 -0.11 1.31 16 10 C -0.18 -7.93 9.87 22.64 0.22 -7.70 16 11 C -0.11 -4.14 9.38 22.31 0.21 -3.93 16 12 C 0.02 0.61 6.73 41.89 0.28 0.89 16 13 C -0.06 -2.23 5.89 -19.92 -0.12 -2.34 16 14 C -0.09 -2.64 9.34 22.61 0.21 -2.43 16 15 C 0.04 0.97 6.47 22.46 0.15 1.11 16 16 O -0.32 -8.06 10.37 -93.39 -0.97 -9.03 16 17 C 0.61 12.73 3.42 113.37 0.39 13.12 16 18 F -0.17 -3.38 15.55 44.97 0.70 -2.68 16 19 F -0.13 -2.60 17.53 44.97 0.79 -1.81 16 20 F -0.17 -3.37 15.55 44.97 0.70 -2.67 16 21 C -0.15 -3.69 8.25 22.42 0.18 -3.51 16 22 C -0.15 -3.84 9.92 22.36 0.22 -3.62 16 23 C 0.21 6.37 6.76 38.59 0.26 6.64 16 24 N -0.86 -25.54 8.42 -50.76 -0.43 -25.97 16 25 N -0.44 -19.01 6.66 -182.77 -1.22 -20.23 16 26 C -0.05 -2.23 8.34 85.45 0.71 -1.51 16 27 H 0.30 13.28 8.30 -92.70 -0.77 12.51 16 28 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 29 H 0.14 4.48 6.17 -2.91 -0.02 4.47 16 30 H 0.14 3.97 6.17 -2.91 -0.02 3.96 16 31 H 0.14 2.96 5.06 -2.91 -0.01 2.94 16 32 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 33 H 0.41 13.87 5.80 -92.71 -0.54 13.33 16 34 H 0.40 9.12 8.91 -92.71 -0.83 8.30 16 35 H 0.13 5.93 4.26 -2.91 -0.01 5.92 16 Total: -1.00 -53.93 306.45 4.63 -49.30 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.22 Total: 33.32 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 3.30 Total: -21.52 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -1.34 Total: -86.29 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.97 Total: -9.03 kcal Atomic # 9 Polarization: -9.36 SS G_CDS: 2.19 Total: -7.17 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.68 Total: 41.40 kcal Total: -53.93 4.63 -49.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244182217.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.227 kcal (2) G-P(sol) polarization free energy of solvation -53.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds