Wall clock time and date at job start Tue Mar 31 2020 14:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86800 * 119.99748 * 2 1 4 4 H 1.48496 * 109.46672 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46934 * 299.99577 * 3 2 1 6 6 H 1.48499 * 109.46974 * 60.00130 * 3 2 1 7 7 C 1.40041 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00070 * 165.73668 * 7 2 1 9 9 C 1.41531 * 120.00100 * 345.74025 * 7 2 1 10 10 C 1.41165 * 120.98682 * 155.05878 * 9 7 2 11 11 C 1.37708 * 119.09485 * 180.02562 * 10 9 7 12 12 N 1.31944 * 121.16292 * 359.74988 * 11 10 9 13 13 C 1.32837 * 122.19509 * 0.52242 * 12 11 10 14 14 C 1.48220 * 119.61949 * 179.75091 * 13 12 11 15 15 C 1.39346 * 120.13827 * 132.41270 * 14 13 12 16 16 C 1.38390 * 119.89438 * 180.02562 * 15 14 13 17 17 O 1.36005 * 119.91162 * 180.02562 * 16 15 14 18 18 C 1.42899 * 116.99772 * 179.97438 * 17 16 15 19 19 F 1.39903 * 109.47255 * 60.00512 * 18 17 16 20 20 F 1.39902 * 109.46931 * 180.02562 * 18 17 16 21 21 F 1.39899 * 109.47696 * 300.00295 * 18 17 16 22 22 C 1.38861 * 120.17702 * 359.97438 * 16 15 14 23 23 C 1.38094 * 120.28251 * 0.02562 * 22 16 15 24 24 C 1.38770 * 120.10151 * 359.97438 * 23 22 16 25 25 N 1.39613 * 120.08963 * 180.27302 * 24 23 22 26 26 C 1.38995 * 120.75823 * 359.47607 * 13 12 11 27 27 H 0.96995 * 119.99661 * 0.02562 * 1 2 3 28 28 H 1.08009 * 120.45013 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.41953 * 179.97438 * 11 10 9 30 30 H 1.07994 * 120.05289 * 359.97438 * 15 14 13 31 31 H 1.08000 * 119.85640 * 180.02562 * 22 16 15 32 32 H 1.07993 * 119.94656 * 180.02562 * 23 22 16 33 33 H 0.96995 * 120.00261 * 171.84480 * 25 24 23 34 34 H 0.96998 * 119.99378 * 351.84952 * 25 24 23 35 35 H 1.07991 * 120.62324 * 180.23328 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7013 1.3464 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0626 -1.2273 -0.2299 9 6 1.3327 -2.4195 0.3030 10 6 1.8129 -3.6594 -0.1712 11 6 1.1252 -4.8094 0.1461 12 7 0.0337 -4.7701 0.8863 13 6 -0.4639 -3.6304 1.3536 14 6 -1.6972 -3.6520 2.1754 15 6 -1.7530 -2.9403 3.3721 16 6 -2.9068 -2.9643 4.1358 17 8 -2.9619 -2.2694 5.3036 18 6 -4.1834 -2.3373 6.0419 19 9 -4.4486 -3.6678 6.3835 20 9 -4.0677 -1.5706 7.2064 21 9 -5.2302 -1.8395 5.2586 22 6 -4.0090 -3.6952 3.7123 23 6 -3.9617 -4.4032 2.5276 24 6 -2.8106 -4.3872 1.7528 25 7 -2.7651 -5.0984 0.5522 26 6 0.1619 -2.4187 1.0853 27 1 -0.4849 0.8400 -0.0004 28 1 2.7071 -3.7052 -0.7753 29 1 1.4877 -5.7608 -0.2142 30 1 -0.8968 -2.3715 3.7035 31 1 -4.9070 -3.7100 4.3122 32 1 -4.8222 -4.9694 2.2033 33 1 -2.0083 -4.9933 -0.0454 34 1 -3.4902 -5.6976 0.3158 35 1 -0.2424 -1.4939 1.4694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244182340.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:38 Heat of formation + Delta-G solvation = -146.997876 kcal Electronic energy + Delta-G solvation = -26715.394532 eV Core-core repulsion = 22262.693055 eV Total energy + Delta-G solvation = -4452.701477 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.35778 -48.09519 -47.94009 -39.97491 -38.61956 -37.36011 -34.23874 -33.55140 -31.89529 -30.63402 -28.99177 -27.62422 -26.02524 -25.54757 -23.33156 -22.13701 -21.48357 -20.84613 -19.17553 -19.05621 -18.90702 -17.54042 -16.75071 -16.33684 -16.02789 -15.51838 -15.06326 -14.83333 -14.56594 -14.48354 -14.40559 -14.31836 -14.25910 -14.12921 -14.04651 -14.00295 -13.47398 -12.89514 -12.79305 -12.64027 -12.46489 -12.21781 -12.03166 -11.47678 -11.26984 -10.98615 -10.85804 -10.32910 -9.98971 -9.88473 -9.53875 -8.86331 -8.14603 -8.08480 -7.68240 -6.92545 -6.83999 -4.69954 1.45517 1.69878 1.81283 2.63312 2.71716 2.98047 2.98962 3.03750 3.14083 3.79526 3.91065 3.96175 4.19303 4.34489 4.54813 4.95920 4.97932 5.32255 5.37279 5.56653 5.70770 6.00179 6.16686 6.21975 6.46615 6.48160 6.59610 6.69219 6.81755 6.94191 7.04716 7.17884 7.21990 7.34168 7.76266 7.90978 7.98880 8.25718 8.34454 8.61894 8.64512 9.42233 9.98517 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.004071 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.886645 B = 6876.600685 C = 8456.335577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.452 4.452 8 H 0.083 0.917 9 C 0.125 3.875 10 C -0.271 4.271 11 C 0.101 3.899 12 N -0.565 5.565 13 C 0.140 3.860 14 C -0.048 4.048 15 C -0.058 4.058 16 C 0.030 3.970 17 O -0.309 6.309 18 C 0.602 3.398 19 F -0.170 7.170 20 F -0.139 7.139 21 F -0.169 7.169 22 C -0.143 4.143 23 C -0.174 4.174 24 C 0.233 3.767 25 N -0.859 5.859 26 C -0.184 4.184 27 H 0.285 0.715 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.409 0.591 34 H 0.390 0.610 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 -3.406 6.395 11.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.483 4.483 8 H 0.101 0.899 9 C 0.117 3.883 10 C -0.295 4.295 11 C -0.054 4.054 12 N -0.281 5.281 13 C 0.009 3.991 14 C -0.054 4.054 15 C -0.078 4.078 16 C -0.013 4.013 17 O -0.230 6.230 18 C 0.511 3.489 19 F -0.152 7.152 20 F -0.121 7.121 21 F -0.152 7.152 22 C -0.163 4.163 23 C -0.197 4.197 24 C 0.125 3.875 25 N -0.398 5.398 26 C -0.207 4.207 27 H 0.096 0.904 28 H 0.119 0.881 29 H 0.140 0.860 30 H 0.154 0.846 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.241 0.759 34 H 0.217 0.783 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.998 -3.921 6.686 11.876 hybrid contribution 0.481 1.399 -0.406 1.534 sum -8.518 -2.522 6.280 10.879 Atomic orbital electron populations 1.69745 1.07660 1.29714 1.33734 1.25993 0.94833 1.01648 0.91922 0.86181 0.80903 0.80465 0.78820 1.18244 1.19770 1.19434 1.19667 0.97119 0.90447 1.41092 0.89887 1.17797 0.90680 0.92412 0.87380 1.21929 1.04530 0.94076 1.08937 1.21834 0.91920 0.96651 0.95013 1.67375 1.15410 1.28359 1.16943 1.19029 0.93045 0.90031 0.96962 1.17937 0.92699 1.00179 0.94588 1.20158 0.95762 0.99374 0.92501 1.18151 0.96974 1.00151 0.86041 1.86397 1.32037 1.69534 1.34996 1.19380 0.78024 0.74401 0.77095 1.93275 1.93789 1.35666 1.92503 1.93271 1.95759 1.75722 1.47305 1.93279 1.59325 1.87717 1.74829 1.21065 0.96990 0.99627 0.98590 1.20178 0.97315 1.05794 0.96418 1.17739 0.92135 0.90737 0.86887 1.42527 1.27268 1.49316 1.20721 1.22298 0.99117 0.97014 1.02243 0.90434 0.88054 0.86003 0.84552 0.85698 0.85672 0.75857 0.78287 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.18 10.85 55.55 0.60 -18.58 16 2 C 0.08 1.80 5.24 -17.34 -0.09 1.71 16 3 Si 0.91 17.70 29.58 -169.99 -5.03 12.68 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.45 -11.29 9.13 -37.65 -0.34 -11.63 16 8 H 0.08 1.99 7.89 -52.49 -0.41 1.57 16 9 C 0.13 3.15 5.60 -106.56 -0.60 2.56 16 10 C -0.27 -6.22 9.90 -38.67 -0.38 -6.61 16 11 C 0.10 2.15 11.15 -17.70 -0.20 1.96 16 12 N -0.57 -12.49 8.59 -9.96 -0.09 -12.57 16 13 C 0.14 3.17 5.75 -83.05 -0.48 2.69 16 14 C -0.05 -0.98 5.62 -104.74 -0.59 -1.57 16 15 C -0.06 -1.10 9.36 -39.11 -0.37 -1.46 16 16 C 0.03 0.51 6.48 -39.30 -0.25 0.25 16 17 O -0.31 -4.91 10.37 -19.76 -0.20 -5.11 16 18 C 0.60 8.00 3.42 101.05 0.35 8.35 16 19 F -0.17 -2.17 15.56 2.25 0.04 -2.13 16 20 F -0.14 -1.73 17.53 2.25 0.04 -1.69 16 21 F -0.17 -2.21 15.55 2.25 0.04 -2.17 16 22 C -0.14 -2.20 8.24 -39.40 -0.32 -2.52 16 23 C -0.17 -2.63 9.88 -39.44 -0.39 -3.02 16 24 C 0.23 4.10 6.74 -83.47 -0.56 3.54 16 25 N -0.86 -13.57 8.83 32.58 0.29 -13.28 16 26 C -0.18 -4.54 8.14 -38.33 -0.31 -4.85 16 27 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 28 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 29 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 30 H 0.14 2.57 7.97 -52.49 -0.42 2.15 16 31 H 0.13 1.67 5.06 -52.49 -0.27 1.40 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.41 7.25 6.67 -40.82 -0.27 6.98 16 34 H 0.39 4.74 8.85 -40.82 -0.36 4.38 16 35 H 0.13 3.36 6.10 -52.49 -0.32 3.04 16 LS Contribution 317.82 15.07 4.79 4.79 Total: -1.00 -26.19 317.82 -6.53 -32.72 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -2.45 Total: 15.97 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -4.54 Total: -10.62 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.80 Total: -44.43 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.20 Total: -5.11 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.11 Total: -5.99 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.19 -6.53 -32.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244182340.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.279 kcal (2) G-P(sol) polarization free energy of solvation -26.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds