Wall clock time and date at job start Tue Mar 31 2020 14:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86800 * 119.99748 * 2 1 4 4 H 1.48496 * 109.46672 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46934 * 299.99577 * 3 2 1 6 6 H 1.48499 * 109.46974 * 60.00130 * 3 2 1 7 7 C 1.40041 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00070 * 165.73668 * 7 2 1 9 9 C 1.41531 * 120.00100 * 345.74025 * 7 2 1 10 10 C 1.41165 * 120.98682 * 155.05878 * 9 7 2 11 11 C 1.37708 * 119.09485 * 180.02562 * 10 9 7 12 12 N 1.31944 * 121.16292 * 359.74988 * 11 10 9 13 13 C 1.32837 * 122.19509 * 0.52242 * 12 11 10 14 14 C 1.48220 * 119.61949 * 179.75091 * 13 12 11 15 15 C 1.39346 * 120.13827 * 132.41270 * 14 13 12 16 16 C 1.38390 * 119.89438 * 180.02562 * 15 14 13 17 17 O 1.36005 * 119.91162 * 180.02562 * 16 15 14 18 18 C 1.42899 * 116.99772 * 179.97438 * 17 16 15 19 19 F 1.39903 * 109.47255 * 60.00512 * 18 17 16 20 20 F 1.39902 * 109.46931 * 180.02562 * 18 17 16 21 21 F 1.39899 * 109.47696 * 300.00295 * 18 17 16 22 22 C 1.38861 * 120.17702 * 359.97438 * 16 15 14 23 23 C 1.38094 * 120.28251 * 0.02562 * 22 16 15 24 24 C 1.38770 * 120.10151 * 359.97438 * 23 22 16 25 25 N 1.39613 * 120.08963 * 180.27302 * 24 23 22 26 26 C 1.38995 * 120.75823 * 359.47607 * 13 12 11 27 27 H 0.96995 * 119.99661 * 0.02562 * 1 2 3 28 28 H 1.08009 * 120.45013 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.41953 * 179.97438 * 11 10 9 30 30 H 1.07994 * 120.05289 * 359.97438 * 15 14 13 31 31 H 1.08000 * 119.85640 * 180.02562 * 22 16 15 32 32 H 1.07993 * 119.94656 * 180.02562 * 23 22 16 33 33 H 0.96995 * 120.00261 * 171.84480 * 25 24 23 34 34 H 0.96998 * 119.99378 * 351.84952 * 25 24 23 35 35 H 1.07991 * 120.62324 * 180.23328 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7013 1.3464 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0626 -1.2273 -0.2299 9 6 1.3327 -2.4195 0.3030 10 6 1.8129 -3.6594 -0.1712 11 6 1.1252 -4.8094 0.1461 12 7 0.0337 -4.7701 0.8863 13 6 -0.4639 -3.6304 1.3536 14 6 -1.6972 -3.6520 2.1754 15 6 -1.7530 -2.9403 3.3721 16 6 -2.9068 -2.9643 4.1358 17 8 -2.9619 -2.2694 5.3036 18 6 -4.1834 -2.3373 6.0419 19 9 -4.4486 -3.6678 6.3835 20 9 -4.0677 -1.5706 7.2064 21 9 -5.2302 -1.8395 5.2586 22 6 -4.0090 -3.6952 3.7123 23 6 -3.9617 -4.4032 2.5276 24 6 -2.8106 -4.3872 1.7528 25 7 -2.7651 -5.0984 0.5522 26 6 0.1619 -2.4187 1.0853 27 1 -0.4849 0.8400 -0.0004 28 1 2.7071 -3.7052 -0.7753 29 1 1.4877 -5.7608 -0.2142 30 1 -0.8968 -2.3715 3.7035 31 1 -4.9070 -3.7100 4.3122 32 1 -4.8222 -4.9694 2.2033 33 1 -2.0083 -4.9933 -0.0454 34 1 -3.4902 -5.6976 0.3158 35 1 -0.2424 -1.4939 1.4694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244182340.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:37 Heat of formation + Delta-G solvation = -161.513002 kcal Electronic energy + Delta-G solvation = -26716.023955 eV Core-core repulsion = 22262.693055 eV Total energy + Delta-G solvation = -4453.330900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.41249 -49.13431 -48.99124 -41.32205 -40.19444 -38.77737 -36.01287 -34.86486 -33.41646 -32.41441 -30.47204 -29.02907 -27.85050 -26.68411 -24.80854 -23.65637 -23.04549 -22.33347 -20.51419 -20.12353 -20.05309 -19.17699 -18.06315 -17.72210 -17.47627 -17.04692 -16.26873 -16.12492 -16.05199 -15.92347 -15.86291 -15.46823 -15.43973 -15.37913 -15.21616 -15.10973 -14.85019 -14.45714 -14.29002 -14.11904 -13.95154 -13.59192 -13.47870 -13.12591 -12.93112 -12.69610 -12.26705 -11.95082 -11.71031 -11.28913 -11.18820 -10.34212 -9.92969 -9.88047 -9.31812 -8.69788 -8.19868 -6.58094 0.03341 0.47366 0.56221 0.96021 0.97767 1.37921 1.52166 1.53132 1.84895 2.16620 2.62253 2.79632 2.82954 3.05460 3.08750 3.55478 3.68154 3.74229 3.94633 4.11474 4.30786 4.50041 4.76517 4.88071 4.93790 4.95448 5.01564 5.14774 5.19163 5.22163 5.46485 5.47436 5.55949 5.88237 5.93785 6.19087 6.50358 6.58489 6.78121 6.80283 7.07496 7.65281 8.23258 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.004071 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.886645 B = 6876.600685 C = 8456.335577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.038 3.962 3 Si 0.984 3.016 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.486 4.486 8 H 0.083 0.917 9 C 0.097 3.903 10 C -0.286 4.286 11 C 0.102 3.898 12 N -0.563 5.563 13 C 0.147 3.853 14 C -0.087 4.087 15 C -0.072 4.072 16 C 0.027 3.973 17 O -0.323 6.323 18 C 0.608 3.392 19 F -0.163 7.163 20 F -0.133 7.133 21 F -0.165 7.165 22 C -0.133 4.133 23 C -0.159 4.159 24 C 0.226 3.774 25 N -0.853 5.853 26 C -0.212 4.212 27 H 0.291 0.709 28 H 0.114 0.886 29 H 0.160 0.840 30 H 0.120 0.880 31 H 0.151 0.849 32 H 0.166 0.834 33 H 0.400 0.600 34 H 0.408 0.592 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.983 -4.120 6.717 12.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.179 1.179 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.517 4.517 8 H 0.102 0.898 9 C 0.090 3.910 10 C -0.309 4.309 11 C -0.052 4.052 12 N -0.279 5.279 13 C 0.016 3.984 14 C -0.092 4.092 15 C -0.092 4.092 16 C -0.017 4.017 17 O -0.244 6.244 18 C 0.517 3.483 19 F -0.145 7.145 20 F -0.114 7.114 21 F -0.147 7.147 22 C -0.153 4.153 23 C -0.182 4.182 24 C 0.118 3.882 25 N -0.392 5.392 26 C -0.235 4.235 27 H 0.102 0.898 28 H 0.132 0.868 29 H 0.177 0.823 30 H 0.139 0.861 31 H 0.168 0.832 32 H 0.183 0.817 33 H 0.230 0.770 34 H 0.239 0.761 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.522 -4.667 7.004 13.474 hybrid contribution 0.843 1.513 -0.443 1.788 sum -9.679 -3.154 6.561 12.111 Atomic orbital electron populations 1.69812 1.09058 1.30867 1.34224 1.26819 0.95520 1.04665 0.90929 0.85122 0.79506 0.75944 0.79016 1.17858 1.18854 1.19034 1.19932 0.97385 0.91539 1.42805 0.89849 1.18196 0.91324 0.93626 0.87894 1.22148 1.05320 0.93962 1.09486 1.22407 0.91195 0.97708 0.93924 1.67530 1.15566 1.27863 1.16930 1.19356 0.93516 0.89400 0.96094 1.17948 0.92913 1.02941 0.95435 1.20066 0.96407 0.99692 0.93061 1.18124 0.96846 1.00448 0.86253 1.86360 1.33691 1.69529 1.34823 1.19227 0.77331 0.74698 0.77000 1.93288 1.93641 1.35203 1.92409 1.93291 1.95675 1.75611 1.46825 1.93289 1.58918 1.87704 1.74793 1.21398 0.97018 0.98185 0.98656 1.20586 0.97386 1.04832 0.95370 1.17900 0.92184 0.90493 0.87662 1.42480 1.27522 1.49326 1.19883 1.22215 1.00179 0.97257 1.03843 0.89847 0.86819 0.82285 0.86149 0.83174 0.81666 0.76984 0.76122 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.36 10.85 21.84 0.24 -41.13 16 2 C 0.04 1.83 5.24 85.29 0.45 2.28 16 3 Si 0.98 36.87 29.58 68.60 2.03 38.90 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 5 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 6 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 7 C -0.49 -25.20 9.13 23.52 0.21 -24.98 16 8 H 0.08 4.14 7.89 -2.91 -0.02 4.11 16 9 C 0.10 5.11 5.60 -21.12 -0.12 4.99 16 10 C -0.29 -13.35 9.90 22.86 0.23 -13.13 16 11 C 0.10 4.33 11.15 84.55 0.94 5.27 16 12 N -0.56 -24.89 8.59 -185.41 -1.59 -26.48 16 13 C 0.15 6.87 5.75 41.83 0.24 7.11 16 14 C -0.09 -3.53 5.62 -19.94 -0.11 -3.64 16 15 C -0.07 -2.81 9.36 22.57 0.21 -2.60 16 16 C 0.03 0.88 6.48 22.46 0.15 1.03 16 17 O -0.32 -10.01 10.37 -93.61 -0.97 -10.98 16 18 C 0.61 14.99 3.42 113.37 0.39 15.38 16 19 F -0.16 -3.74 15.56 44.97 0.70 -3.04 16 20 F -0.13 -3.07 17.53 44.97 0.79 -2.28 16 21 F -0.16 -3.90 15.55 44.97 0.70 -3.20 16 22 C -0.13 -3.73 8.24 22.38 0.18 -3.54 16 23 C -0.16 -4.31 9.88 22.36 0.22 -4.09 16 24 C 0.23 7.64 6.74 38.45 0.26 7.90 16 25 N -0.85 -25.49 8.83 -50.84 -0.45 -25.94 16 26 C -0.21 -11.01 8.14 23.08 0.19 -10.82 16 27 H 0.29 13.38 8.29 -92.71 -0.77 12.61 16 28 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 29 H 0.16 5.42 8.06 -2.91 -0.02 5.40 16 30 H 0.12 4.89 7.97 -2.91 -0.02 4.87 16 31 H 0.15 3.43 5.06 -2.91 -0.01 3.41 16 32 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.40 13.83 6.67 -92.71 -0.62 13.21 16 34 H 0.41 8.83 8.85 -92.71 -0.82 8.01 16 35 H 0.11 6.16 6.10 -2.92 -0.02 6.14 16 Total: -1.00 -58.27 317.82 4.64 -53.62 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -0.24 Total: 39.38 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 3.44 Total: -18.85 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -1.80 Total: -93.55 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.97 Total: -10.98 kcal Atomic # 9 Polarization: -10.71 SS G_CDS: 2.19 Total: -8.53 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Total: -58.27 4.64 -53.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244182340.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.890 kcal (2) G-P(sol) polarization free energy of solvation -58.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds