Wall clock time and date at job start Tue Mar 31 2020 14:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86804 * 119.99967 * 2 1 4 4 H 1.48493 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46823 * 299.99874 * 3 2 1 6 6 H 1.48504 * 109.47063 * 59.99612 * 3 2 1 7 7 C 1.39932 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99327 * 163.62743 * 7 2 1 9 9 C 1.41432 * 120.00652 * 343.63164 * 7 2 1 10 10 C 1.40810 * 120.60604 * 155.71877 * 9 7 2 11 11 N 1.31498 * 120.67552 * 180.02562 * 10 9 7 12 12 C 1.31938 * 122.12485 * 359.97438 * 11 10 9 13 13 C 1.39717 * 121.14275 * 0.25340 * 12 11 10 14 14 C 1.48318 * 120.41386 * 179.72105 * 13 12 11 15 15 C 1.39282 * 120.13383 * 129.73205 * 14 13 12 16 16 C 1.38435 * 119.89830 * 179.77138 * 15 14 13 17 17 O 1.35997 * 119.91719 * 180.24804 * 16 15 14 18 18 C 1.42900 * 117.00148 * 180.25550 * 17 16 15 19 19 F 1.39907 * 109.47392 * 59.99763 * 18 17 16 20 20 F 1.39889 * 109.47485 * 180.02562 * 18 17 16 21 21 F 1.39908 * 109.46952 * 300.00037 * 18 17 16 22 22 C 1.38835 * 120.16258 * 0.50425 * 16 15 14 23 23 C 1.38117 * 120.27092 * 359.74626 * 22 16 15 24 24 C 1.38739 * 120.10190 * 359.97438 * 23 22 16 25 25 N 1.39719 * 120.08467 * 179.97438 * 24 23 22 26 26 C 1.39213 * 119.17152 * 359.50184 * 13 12 11 27 27 H 0.96995 * 120.00314 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.66096 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.42943 * 179.97438 * 12 11 10 30 30 H 1.08001 * 120.04751 * 359.97438 * 15 14 13 31 31 H 1.08001 * 119.85932 * 179.76707 * 22 16 15 32 32 H 1.08000 * 119.95261 * 179.97438 * 23 22 16 33 33 H 0.97004 * 119.99603 * 180.02562 * 25 24 23 34 34 H 0.96992 * 120.00166 * 0.02626 * 25 24 23 35 35 H 1.08006 * 120.95515 * 180.23549 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0552 -1.2308 -0.2631 9 6 1.3439 -2.4118 0.3462 10 6 1.8230 -3.6540 -0.1121 11 7 1.2064 -4.7704 0.2080 12 6 0.1248 -4.7828 0.9635 13 6 -0.4240 -3.5973 1.4591 14 6 -1.6440 -3.6295 2.3020 15 6 -1.6718 -2.9510 3.5180 16 6 -2.8148 -2.9804 4.2986 17 8 -2.8441 -2.3139 5.4837 18 6 -4.0532 -2.3908 6.2415 19 9 -4.3228 -3.7273 6.5552 20 9 -3.9113 -1.6538 7.4220 21 9 -5.1095 -1.8662 5.4889 22 6 -3.9292 -3.6930 3.8771 23 6 -3.9073 -4.3726 2.6749 24 6 -2.7698 -4.3459 1.8811 25 7 -2.7479 -5.0339 0.6653 26 6 0.1913 -2.3859 1.1558 27 1 -0.4850 0.8400 -0.0004 28 1 2.7055 -3.6901 -0.7336 29 1 -0.3471 -5.7251 1.1993 30 1 -0.8042 -2.4001 3.8499 31 1 -4.8170 -3.7157 4.4917 32 1 -4.7771 -4.9257 2.3522 33 1 -1.9517 -5.0147 0.1114 34 1 -3.5287 -5.5308 0.3750 35 1 -0.2062 -1.4527 1.5268 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244195897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:43 Heat of formation + Delta-G solvation = -148.949503 kcal Electronic energy + Delta-G solvation = -26700.882996 eV Core-core repulsion = 22248.096890 eV Total energy + Delta-G solvation = -4452.786106 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.40647 -48.14328 -47.98915 -40.07077 -38.68069 -37.47224 -34.22572 -33.68040 -32.32223 -30.42319 -29.16822 -27.73974 -25.73190 -25.61401 -23.36229 -22.16815 -21.56258 -20.92005 -19.19313 -19.10645 -18.90616 -17.50227 -16.85571 -16.43228 -16.13246 -15.53889 -15.30576 -15.11424 -14.87567 -14.56076 -14.46261 -14.40823 -14.27162 -14.19963 -14.06261 -13.97655 -13.44362 -12.97395 -12.79922 -12.55839 -12.34503 -12.21838 -11.78368 -11.61517 -11.34247 -11.21168 -10.91582 -10.63354 -10.07358 -9.91709 -9.49980 -9.01692 -8.29414 -8.07096 -7.74128 -6.96162 -6.94064 -4.61107 1.38709 1.64457 1.71548 2.50134 2.78905 2.93672 2.98296 3.03017 3.08659 3.78214 3.85926 3.89991 4.13796 4.19473 4.48160 4.89210 4.94812 5.30816 5.43933 5.52111 5.69069 5.89256 6.06936 6.14979 6.37705 6.39296 6.50494 6.61066 6.66295 6.90708 6.98587 7.07959 7.11091 7.53761 7.72630 7.77341 7.80629 8.09663 8.29930 8.55902 8.58065 9.48800 9.95266 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.004008 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.444399 B = 6983.996349 C = 8500.910126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.447 4.447 8 H 0.085 0.915 9 C 0.064 3.936 10 C -0.019 4.019 11 N -0.465 5.465 12 C -0.038 4.038 13 C -0.084 4.084 14 C -0.052 4.052 15 C -0.064 4.064 16 C 0.035 3.965 17 O -0.310 6.310 18 C 0.602 3.398 19 F -0.170 7.170 20 F -0.139 7.139 21 F -0.169 7.169 22 C -0.148 4.148 23 C -0.168 4.168 24 C 0.217 3.783 25 N -0.870 5.870 26 C -0.115 4.115 27 H 0.285 0.715 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.408 0.592 34 H 0.392 0.608 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.470 -2.985 7.682 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.476 4.476 8 H 0.103 0.897 9 C 0.060 3.940 10 C -0.180 4.180 11 N -0.172 5.172 12 C -0.195 4.195 13 C -0.087 4.087 14 C -0.058 4.058 15 C -0.083 4.083 16 C -0.008 4.008 17 O -0.230 6.230 18 C 0.511 3.489 19 F -0.152 7.152 20 F -0.120 7.120 21 F -0.151 7.151 22 C -0.167 4.167 23 C -0.191 4.191 24 C 0.111 3.889 25 N -0.411 5.411 26 C -0.140 4.140 27 H 0.096 0.904 28 H 0.145 0.855 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.241 0.759 34 H 0.220 0.780 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.231 -3.498 7.472 12.380 hybrid contribution -0.485 1.494 0.190 1.582 sum -9.716 -2.004 7.662 12.535 Atomic orbital electron populations 1.69775 1.07689 1.29794 1.33722 1.25992 0.94817 1.01722 0.92013 0.86184 0.80989 0.80433 0.78805 1.18149 1.19786 1.19474 1.19628 0.97848 0.90655 1.39470 0.89672 1.18483 0.92048 0.93761 0.89734 1.22548 1.02473 0.88086 1.04935 1.66947 1.07490 1.31624 1.11163 1.21720 0.97416 0.95188 1.05212 1.19237 0.94413 0.95500 0.99548 1.18189 0.93527 0.99646 0.94414 1.20239 0.95906 0.99705 0.92440 1.18245 0.96927 1.00431 0.85203 1.86404 1.32651 1.70876 1.33061 1.19381 0.77875 0.74418 0.77220 1.93277 1.93696 1.35119 1.93113 1.93271 1.95559 1.77279 1.45890 1.93283 1.58616 1.86784 1.76449 1.21071 0.96947 1.00108 0.98591 1.20162 0.97722 1.05701 0.95498 1.17770 0.92774 0.91612 0.86780 1.42761 1.20144 1.57162 1.21037 1.21836 0.97497 0.95955 0.98739 0.90419 0.85543 0.86094 0.84576 0.85651 0.85613 0.75889 0.78036 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.03 10.90 55.55 0.61 -18.43 16 2 C 0.07 1.73 5.20 -17.34 -0.09 1.64 16 3 Si 0.91 17.53 29.59 -169.99 -5.03 12.50 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.45 -10.97 9.09 -37.73 -0.34 -11.31 16 8 H 0.09 1.99 7.90 -52.48 -0.41 1.58 16 9 C 0.06 1.60 5.59 -106.71 -0.60 1.00 16 10 C -0.02 -0.45 10.96 -16.72 -0.18 -0.63 16 11 N -0.47 -10.79 10.32 -12.27 -0.13 -10.92 16 12 C -0.04 -0.81 8.88 -16.95 -0.15 -0.96 16 13 C -0.08 -1.83 5.07 -104.83 -0.53 -2.36 16 14 C -0.05 -0.99 5.50 -104.73 -0.58 -1.57 16 15 C -0.06 -1.15 9.46 -39.12 -0.37 -1.52 16 16 C 0.03 0.57 6.48 -39.29 -0.25 0.32 16 17 O -0.31 -4.76 10.37 -19.73 -0.20 -4.97 16 18 C 0.60 7.76 3.42 101.05 0.35 8.11 16 19 F -0.17 -2.09 15.56 2.25 0.04 -2.06 16 20 F -0.14 -1.67 17.53 2.25 0.04 -1.63 16 21 F -0.17 -2.15 15.55 2.25 0.04 -2.11 16 22 C -0.15 -2.17 8.25 -39.41 -0.32 -2.49 16 23 C -0.17 -2.39 9.88 -39.44 -0.39 -2.78 16 24 C 0.22 3.54 6.68 -83.45 -0.56 2.99 16 25 N -0.87 -12.50 8.63 32.58 0.28 -12.22 16 26 C -0.11 -2.77 8.29 -38.22 -0.32 -3.09 16 27 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 28 H 0.13 2.79 8.06 -52.49 -0.42 2.37 16 29 H 0.12 2.35 7.47 -52.49 -0.39 1.96 16 30 H 0.14 2.46 8.05 -52.49 -0.42 2.04 16 31 H 0.13 1.61 5.07 -52.49 -0.27 1.34 16 32 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.41 6.57 5.97 -40.82 -0.24 6.33 16 34 H 0.39 4.29 8.84 -40.82 -0.36 3.93 16 35 H 0.13 3.29 6.20 -52.48 -0.33 2.96 16 LS Contribution 316.44 15.07 4.77 4.77 Total: -1.00 -25.95 316.44 -6.34 -32.29 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -2.40 Total: 15.44 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -4.34 Total: -12.66 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.76 Total: -41.57 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.20 Total: -4.97 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.11 Total: -5.80 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -25.95 -6.34 -32.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244195897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.657 kcal (2) G-P(sol) polarization free energy of solvation -25.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds