Wall clock time and date at job start Tue Mar 31 2020 14:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86804 * 119.99967 * 2 1 4 4 H 1.48493 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46823 * 299.99874 * 3 2 1 6 6 H 1.48504 * 109.47063 * 59.99612 * 3 2 1 7 7 C 1.39932 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99327 * 163.62743 * 7 2 1 9 9 C 1.41432 * 120.00652 * 343.63164 * 7 2 1 10 10 C 1.40810 * 120.60604 * 155.71877 * 9 7 2 11 11 N 1.31498 * 120.67552 * 180.02562 * 10 9 7 12 12 C 1.31938 * 122.12485 * 359.97438 * 11 10 9 13 13 C 1.39717 * 121.14275 * 0.25340 * 12 11 10 14 14 C 1.48318 * 120.41386 * 179.72105 * 13 12 11 15 15 C 1.39282 * 120.13383 * 129.73205 * 14 13 12 16 16 C 1.38435 * 119.89830 * 179.77138 * 15 14 13 17 17 O 1.35997 * 119.91719 * 180.24804 * 16 15 14 18 18 C 1.42900 * 117.00148 * 180.25550 * 17 16 15 19 19 F 1.39907 * 109.47392 * 59.99763 * 18 17 16 20 20 F 1.39889 * 109.47485 * 180.02562 * 18 17 16 21 21 F 1.39908 * 109.46952 * 300.00037 * 18 17 16 22 22 C 1.38835 * 120.16258 * 0.50425 * 16 15 14 23 23 C 1.38117 * 120.27092 * 359.74626 * 22 16 15 24 24 C 1.38739 * 120.10190 * 359.97438 * 23 22 16 25 25 N 1.39719 * 120.08467 * 179.97438 * 24 23 22 26 26 C 1.39213 * 119.17152 * 359.50184 * 13 12 11 27 27 H 0.96995 * 120.00314 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.66096 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.42943 * 179.97438 * 12 11 10 30 30 H 1.08001 * 120.04751 * 359.97438 * 15 14 13 31 31 H 1.08001 * 119.85932 * 179.76707 * 22 16 15 32 32 H 1.08000 * 119.95261 * 179.97438 * 23 22 16 33 33 H 0.97004 * 119.99603 * 180.02562 * 25 24 23 34 34 H 0.96992 * 120.00166 * 0.02626 * 25 24 23 35 35 H 1.08006 * 120.95515 * 180.23549 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0552 -1.2308 -0.2631 9 6 1.3439 -2.4118 0.3462 10 6 1.8230 -3.6540 -0.1121 11 7 1.2064 -4.7704 0.2080 12 6 0.1248 -4.7828 0.9635 13 6 -0.4240 -3.5973 1.4591 14 6 -1.6440 -3.6295 2.3020 15 6 -1.6718 -2.9510 3.5180 16 6 -2.8148 -2.9804 4.2986 17 8 -2.8441 -2.3139 5.4837 18 6 -4.0532 -2.3908 6.2415 19 9 -4.3228 -3.7273 6.5552 20 9 -3.9113 -1.6538 7.4220 21 9 -5.1095 -1.8662 5.4889 22 6 -3.9292 -3.6930 3.8771 23 6 -3.9073 -4.3726 2.6749 24 6 -2.7698 -4.3459 1.8811 25 7 -2.7479 -5.0339 0.6653 26 6 0.1913 -2.3859 1.1558 27 1 -0.4850 0.8400 -0.0004 28 1 2.7055 -3.6901 -0.7336 29 1 -0.3471 -5.7251 1.1993 30 1 -0.8042 -2.4001 3.8499 31 1 -4.8170 -3.7157 4.4917 32 1 -4.7771 -4.9257 2.3522 33 1 -1.9517 -5.0147 0.1114 34 1 -3.5287 -5.5308 0.3750 35 1 -0.2062 -1.4527 1.5268 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244195897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:43 Heat of formation + Delta-G solvation = -163.429261 kcal Electronic energy + Delta-G solvation = -26701.510885 eV Core-core repulsion = 22248.096890 eV Total energy + Delta-G solvation = -4453.413995 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.42431 -49.14744 -49.00315 -41.36815 -40.24045 -38.86803 -35.98928 -34.92842 -33.82696 -32.23306 -30.58436 -29.06900 -27.54713 -26.70078 -24.83348 -23.65275 -23.10356 -22.36999 -20.43838 -20.13594 -20.04185 -19.14459 -18.09702 -17.79331 -17.58043 -17.03358 -16.99551 -16.26427 -16.09802 -15.88752 -15.64483 -15.48071 -15.45471 -15.39300 -15.16761 -15.12029 -14.83851 -14.36515 -14.26360 -14.02287 -13.68444 -13.60598 -13.50024 -13.30505 -13.10063 -12.78188 -12.39940 -12.12185 -11.63946 -11.25510 -11.21743 -10.50214 -10.11295 -9.79003 -9.38784 -8.71742 -8.23319 -6.47722 0.01598 0.44625 0.55182 0.82811 1.04698 1.39148 1.49361 1.54181 1.84212 2.17111 2.61655 2.73678 2.81685 3.02299 3.04365 3.65264 3.68558 3.73077 4.01958 4.11312 4.18512 4.43718 4.58863 4.79131 4.85038 4.93056 4.99439 5.12399 5.16556 5.19209 5.35940 5.45245 5.77383 5.86575 5.91023 6.00055 6.46158 6.52445 6.74039 6.75072 7.00930 7.66592 8.21597 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.004008 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.444399 B = 6983.996349 C = 8500.910126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.037 3.963 3 Si 0.983 3.017 4 H -0.254 1.254 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.478 4.478 8 H 0.087 0.913 9 C 0.041 3.959 10 C -0.037 4.037 11 N -0.473 5.473 12 C -0.034 4.034 13 C -0.071 4.071 14 C -0.087 4.087 15 C -0.077 4.077 16 C 0.029 3.971 17 O -0.324 6.324 18 C 0.608 3.392 19 F -0.163 7.163 20 F -0.133 7.133 21 F -0.165 7.165 22 C -0.138 4.138 23 C -0.154 4.154 24 C 0.216 3.784 25 N -0.862 5.862 26 C -0.137 4.137 27 H 0.291 0.709 28 H 0.136 0.864 29 H 0.146 0.854 30 H 0.120 0.880 31 H 0.149 0.851 32 H 0.166 0.834 33 H 0.400 0.600 34 H 0.410 0.590 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.341 -3.415 8.248 14.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.507 4.507 8 H 0.105 0.895 9 C 0.037 3.963 10 C -0.198 4.198 11 N -0.180 5.180 12 C -0.191 4.191 13 C -0.074 4.074 14 C -0.093 4.093 15 C -0.096 4.096 16 C -0.014 4.014 17 O -0.245 6.245 18 C 0.517 3.483 19 F -0.145 7.145 20 F -0.114 7.114 21 F -0.147 7.147 22 C -0.157 4.157 23 C -0.177 4.177 24 C 0.108 3.892 25 N -0.403 5.403 26 C -0.163 4.163 27 H 0.102 0.898 28 H 0.153 0.847 29 H 0.163 0.837 30 H 0.139 0.861 31 H 0.167 0.833 32 H 0.183 0.817 33 H 0.231 0.769 34 H 0.241 0.759 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.123 -3.959 8.029 14.278 hybrid contribution -0.050 1.519 0.099 1.523 sum -11.174 -2.440 8.128 14.031 Atomic orbital electron populations 1.69830 1.09057 1.30969 1.34185 1.26797 0.95481 1.04660 0.90998 0.85125 0.79623 0.75943 0.78944 1.17756 1.18968 1.19099 1.19886 0.98202 0.91598 1.41036 0.89484 1.18783 0.92738 0.94500 0.90286 1.22698 1.03220 0.88098 1.05776 1.66970 1.08086 1.31346 1.11616 1.22109 0.96731 0.96112 1.04195 1.19418 0.94893 0.94490 0.98569 1.18101 0.93707 1.02497 0.94991 1.20138 0.96449 1.00026 0.93003 1.18224 0.96896 1.00859 0.85441 1.86367 1.34200 1.70926 1.32962 1.19232 0.77232 0.74699 0.77100 1.93290 1.93554 1.34646 1.93027 1.93289 1.95487 1.77198 1.45453 1.93291 1.58249 1.86778 1.76428 1.21398 0.96872 0.98654 0.98787 1.20567 0.97934 1.04685 0.94476 1.17883 0.92591 0.91136 0.87550 1.42713 1.20596 1.56813 1.20199 1.21786 0.98309 0.96408 0.99837 0.89798 0.84691 0.83715 0.86149 0.83323 0.81651 0.76865 0.75867 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.66 10.90 21.82 0.24 -40.42 16 2 C 0.04 1.77 5.20 85.25 0.44 2.22 16 3 Si 0.98 36.31 29.59 68.60 2.03 38.34 16 4 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 5 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 6 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.48 -24.34 9.09 23.47 0.21 -24.13 16 8 H 0.09 4.22 7.90 -2.91 -0.02 4.20 16 9 C 0.04 2.14 5.59 -21.22 -0.12 2.02 16 10 C -0.04 -1.82 10.96 85.37 0.94 -0.88 16 11 N -0.47 -22.16 10.32 -192.74 -1.99 -24.15 16 12 C -0.03 -1.45 8.88 85.03 0.76 -0.69 16 13 C -0.07 -3.15 5.07 -20.00 -0.10 -3.25 16 14 C -0.09 -3.30 5.50 -19.94 -0.11 -3.40 16 15 C -0.08 -2.81 9.46 22.57 0.21 -2.60 16 16 C 0.03 0.91 6.48 22.46 0.15 1.06 16 17 O -0.32 -9.63 10.37 -93.52 -0.97 -10.60 16 18 C 0.61 14.44 3.42 113.37 0.39 14.82 16 19 F -0.16 -3.58 15.56 44.97 0.70 -2.88 16 20 F -0.13 -2.98 17.53 44.97 0.79 -2.19 16 21 F -0.17 -3.78 15.55 44.97 0.70 -3.09 16 22 C -0.14 -3.63 8.25 22.38 0.18 -3.45 16 23 C -0.15 -3.83 9.88 22.36 0.22 -3.61 16 24 C 0.22 6.61 6.68 38.41 0.26 6.87 16 25 N -0.86 -22.84 8.63 -50.82 -0.44 -23.28 16 26 C -0.14 -6.92 8.29 23.15 0.19 -6.73 16 27 H 0.29 13.16 8.30 -92.71 -0.77 12.39 16 28 H 0.14 6.18 8.06 -2.91 -0.02 6.15 16 29 H 0.15 5.44 7.47 -2.91 -0.02 5.42 16 30 H 0.12 4.63 8.05 -2.91 -0.02 4.61 16 31 H 0.15 3.21 5.07 -2.91 -0.01 3.20 16 32 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 33 H 0.40 12.33 5.97 -92.71 -0.55 11.78 16 34 H 0.41 7.67 8.84 -92.71 -0.82 6.85 16 35 H 0.11 6.08 6.20 -2.91 -0.02 6.06 16 Total: -1.00 -57.10 316.44 4.51 -52.59 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.17 Total: 37.44 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 3.62 Total: -21.76 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -2.19 Total: -87.85 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.97 Total: -10.60 kcal Atomic # 9 Polarization: -10.35 SS G_CDS: 2.19 Total: -8.16 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Total: -57.10 4.51 -52.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244195897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.840 kcal (2) G-P(sol) polarization free energy of solvation -57.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds