Wall clock time and date at job start Tue Mar 31 2020 14:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86797 * 119.99830 * 2 1 4 4 H 1.48496 * 109.46990 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.47002 * 299.99769 * 3 2 1 6 6 H 1.48502 * 109.47566 * 59.99697 * 3 2 1 7 7 C 1.40053 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99843 * 180.02562 * 7 2 1 9 9 C 1.40897 * 120.00298 * 0.02562 * 7 2 1 10 10 C 1.40923 * 119.67702 * 179.97438 * 9 7 2 11 11 C 1.36593 * 119.27261 * 180.02562 * 10 9 7 12 12 C 1.40385 * 118.59985 * 0.02562 * 11 10 9 13 13 C 1.47738 * 120.35686 * 179.97438 * 12 11 10 14 14 C 1.39645 * 120.16421 * 310.01854 * 13 12 11 15 15 C 1.38254 * 119.87035 * 179.97438 * 14 13 12 16 16 O 1.35984 * 119.88329 * 180.02562 * 15 14 13 17 17 C 1.42899 * 116.99678 * 180.02562 * 16 15 14 18 18 F 1.39902 * 109.47201 * 59.99696 * 17 16 15 19 19 F 1.39908 * 109.47436 * 179.97438 * 17 16 15 20 20 F 1.39895 * 109.47054 * 299.99648 * 17 16 15 21 21 C 1.39026 * 120.22326 * 359.97438 * 15 14 13 22 22 C 1.38078 * 120.34894 * 0.02562 * 21 15 14 23 23 C 1.38775 * 120.12015 * 359.71693 * 22 21 15 24 24 N 1.39382 * 120.11457 * 180.29471 * 23 22 21 25 25 C 1.40215 * 119.29103 * 0.02562 * 12 11 10 26 26 N 1.31150 * 120.67214 * 359.97438 * 25 12 11 27 27 H 0.96991 * 120.00013 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.36468 * 0.04336 * 10 9 7 29 29 H 1.08001 * 120.69901 * 179.97438 * 11 10 9 30 30 H 1.07996 * 120.06661 * 359.97438 * 14 13 12 31 31 H 1.08007 * 119.82672 * 180.02562 * 21 15 14 32 32 H 1.07997 * 119.94137 * 180.02562 * 22 21 15 33 33 H 0.97005 * 120.00163 * 180.23465 * 24 23 22 34 34 H 0.96997 * 119.99614 * 0.24501 * 24 23 22 35 35 H 1.08003 * 119.65653 * 179.72232 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8827 2.3964 -1.2126 6 1 1.8827 2.3966 1.2124 7 6 2.0078 -1.2129 0.0005 8 1 3.0878 -1.2128 0.0010 9 6 1.3034 -2.4331 0.0005 10 6 2.0149 -3.6495 0.0005 11 6 1.3237 -4.8276 0.0000 12 6 -0.0794 -4.7835 -0.0011 13 6 -0.8658 -6.0343 -0.0022 14 6 -0.5813 -7.0411 -0.9271 15 6 -1.3206 -8.2093 -0.9224 16 8 -1.0434 -9.1902 -1.8226 17 6 -1.8461 -10.3709 -1.7631 18 9 -3.1874 -10.0343 -1.9749 19 9 -1.4293 -11.2686 -2.7519 20 9 -1.7078 -10.9658 -0.5045 21 6 -2.3458 -8.3850 0.0001 22 6 -2.6349 -7.3955 0.9187 23 6 -1.8984 -6.2194 0.9303 24 7 -2.1863 -5.2231 1.8615 25 6 -0.7267 -3.5397 -0.0021 26 7 -0.0348 -2.4255 -0.0016 27 1 -0.4850 0.8400 0.0004 28 1 3.0950 -3.6502 0.0012 29 1 1.8457 -5.7731 -0.0004 30 1 0.2148 -6.9075 -1.6446 31 1 -2.9190 -9.3004 -0.0017 32 1 -3.4324 -7.5391 1.6326 33 1 -1.6727 -4.4002 1.8660 34 1 -2.9003 -5.3527 2.5053 35 1 -1.8059 -3.4989 -0.0075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244196014.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:46 Heat of formation + Delta-G solvation = -139.507743 kcal Electronic energy + Delta-G solvation = -26276.716116 eV Core-core repulsion = 21824.339436 eV Total energy + Delta-G solvation = -4452.376681 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.40927 -48.14924 -47.99130 -39.98313 -38.59548 -37.40730 -33.93624 -33.65620 -31.86528 -30.61634 -29.30000 -28.01376 -25.77398 -25.53936 -22.83437 -22.23653 -21.57640 -20.92303 -19.12904 -19.10805 -18.89217 -17.64758 -16.82308 -16.65529 -16.13026 -15.59538 -15.11092 -14.88443 -14.60076 -14.47388 -14.42291 -14.33764 -14.29861 -14.14461 -14.01482 -14.00906 -13.42876 -12.92171 -12.69905 -12.55598 -12.33649 -12.14966 -11.96291 -11.38844 -11.32829 -11.11146 -10.82345 -10.43637 -10.11297 -9.94672 -9.59334 -8.82440 -8.38253 -7.75083 -7.71791 -6.90163 -6.59676 -4.68282 1.48262 1.65112 1.77428 2.57316 2.92351 2.94623 2.98524 3.02639 3.05629 3.79297 3.86102 3.93089 4.17200 4.27873 4.57229 4.94295 5.03852 5.39447 5.57672 5.69712 5.82387 5.90688 6.04831 6.14672 6.26104 6.45661 6.55747 6.63435 6.70047 6.81868 6.92290 7.15946 7.22574 7.41677 7.61222 7.85438 7.86338 8.02938 8.16004 8.44399 8.72930 9.91105 10.09092 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.028865 B = 0.002684 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.815610 B =10429.766441 C =10910.107788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.064 3.936 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.413 4.413 8 H 0.087 0.913 9 C 0.252 3.748 10 C -0.270 4.270 11 C -0.033 4.033 12 C -0.272 4.272 13 C -0.020 4.020 14 C -0.085 4.085 15 C 0.037 3.963 16 O -0.311 6.311 17 C 0.602 3.398 18 F -0.170 7.170 19 F -0.140 7.140 20 F -0.170 7.170 21 C -0.161 4.161 22 C -0.166 4.166 23 C 0.202 3.798 24 N -0.870 5.870 25 C 0.145 3.855 26 N -0.485 5.485 27 H 0.276 0.724 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.407 0.593 34 H 0.391 0.609 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 -12.644 0.605 13.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.163 4.163 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.442 4.442 8 H 0.105 0.895 9 C 0.128 3.872 10 C -0.293 4.293 11 C -0.057 4.057 12 C -0.278 4.278 13 C -0.025 4.025 14 C -0.104 4.104 15 C -0.006 4.006 16 O -0.232 6.232 17 C 0.511 3.489 18 F -0.152 7.152 19 F -0.121 7.121 20 F -0.152 7.152 21 C -0.180 4.180 22 C -0.189 4.189 23 C 0.096 3.904 24 N -0.411 5.411 25 C -0.024 4.024 26 N -0.196 5.196 27 H 0.087 0.913 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.239 0.761 34 H 0.219 0.781 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.460 -11.663 0.447 12.886 hybrid contribution 0.456 -0.317 0.233 0.602 sum -5.004 -11.980 0.680 13.001 Atomic orbital electron populations 1.70134 1.07310 1.28176 1.26665 1.26169 0.95005 1.01443 0.93640 0.86216 0.80875 0.80739 0.78771 1.18224 1.19619 1.19647 1.19756 0.94654 0.89565 1.40268 0.89461 1.18645 0.88468 0.91956 0.88084 1.21415 0.98919 0.93501 1.15438 1.20617 0.92733 0.96782 0.95561 1.18807 0.92997 0.91595 1.24417 1.18139 0.95775 0.94278 0.94298 1.20299 1.00227 0.90043 0.99839 1.18311 1.00462 0.88702 0.93113 1.86392 1.55921 1.24373 1.56484 1.19388 0.75631 0.79581 0.74320 1.93278 1.35188 1.92119 1.94590 1.93271 1.90568 1.66270 1.62019 1.93274 1.95318 1.84706 1.41915 1.21014 0.98673 1.00666 0.97653 1.20139 1.02850 0.93486 1.02456 1.17903 0.93857 0.88881 0.89716 1.42622 1.41296 1.20200 1.36959 1.22724 0.98507 0.87738 0.93404 1.68816 1.07128 1.25999 1.17683 0.91300 0.88139 0.88452 0.85052 0.85961 0.85963 0.76069 0.78144 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.50 11.44 55.55 0.64 -16.87 16 2 C 0.06 1.53 5.50 -17.33 -0.10 1.44 16 3 Si 0.91 17.40 29.56 -169.99 -5.02 12.38 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.41 -10.33 9.11 -37.90 -0.35 -10.68 16 8 H 0.09 2.04 7.85 -52.49 -0.41 1.63 16 9 C 0.25 6.43 6.55 -84.98 -0.56 5.88 16 10 C -0.27 -6.21 9.76 -39.16 -0.38 -6.59 16 11 C -0.03 -0.71 9.60 -39.37 -0.38 -1.08 16 12 C -0.27 -5.63 5.10 -104.46 -0.53 -6.16 16 13 C -0.02 -0.35 5.51 -104.69 -0.58 -0.93 16 14 C -0.08 -1.45 9.47 -39.05 -0.37 -1.82 16 15 C 0.04 0.58 6.47 -39.28 -0.25 0.33 16 16 O -0.31 -4.61 10.37 -19.69 -0.20 -4.81 16 17 C 0.60 7.53 3.42 101.05 0.35 7.88 16 18 F -0.17 -2.09 15.56 2.25 0.04 -2.05 16 19 F -0.14 -1.63 17.53 2.25 0.04 -1.59 16 20 F -0.17 -2.07 15.55 2.25 0.04 -2.04 16 21 C -0.16 -2.33 8.25 -39.35 -0.32 -2.65 16 22 C -0.17 -2.35 9.88 -39.44 -0.39 -2.74 16 23 C 0.20 3.24 6.69 -83.43 -0.56 2.68 16 24 N -0.87 -12.49 8.64 32.61 0.28 -12.21 16 25 C 0.14 3.23 8.89 -17.10 -0.15 3.08 16 26 N -0.48 -12.39 7.83 -10.82 -0.08 -12.48 16 27 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 28 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 29 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.13 2.20 8.05 -52.49 -0.42 1.78 16 31 H 0.12 1.57 5.06 -52.48 -0.27 1.30 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.41 6.60 6.00 -40.82 -0.25 6.35 16 34 H 0.39 4.37 8.84 -40.82 -0.36 4.01 16 35 H 0.12 2.49 7.54 -52.48 -0.40 2.09 16 LS Contribution 317.79 15.07 4.79 4.79 Total: -1.00 -26.48 317.79 -6.57 -33.05 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -2.50 Total: 13.20 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -4.57 Total: -11.37 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.83 Total: -41.55 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.20 Total: -4.81 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.11 Total: -5.68 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.02 Total: 12.38 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.48 -6.57 -33.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244196014.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.456 kcal (2) G-P(sol) polarization free energy of solvation -26.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds