Wall clock time and date at job start Tue Mar 31 2020 14:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86797 * 119.99830 * 2 1 4 4 H 1.48496 * 109.46990 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.47002 * 299.99769 * 3 2 1 6 6 H 1.48502 * 109.47566 * 59.99697 * 3 2 1 7 7 C 1.40053 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99843 * 180.02562 * 7 2 1 9 9 C 1.40897 * 120.00298 * 0.02562 * 7 2 1 10 10 C 1.40923 * 119.67702 * 179.97438 * 9 7 2 11 11 C 1.36593 * 119.27261 * 180.02562 * 10 9 7 12 12 C 1.40385 * 118.59985 * 0.02562 * 11 10 9 13 13 C 1.47738 * 120.35686 * 179.97438 * 12 11 10 14 14 C 1.39645 * 120.16421 * 310.01854 * 13 12 11 15 15 C 1.38254 * 119.87035 * 179.97438 * 14 13 12 16 16 O 1.35984 * 119.88329 * 180.02562 * 15 14 13 17 17 C 1.42899 * 116.99678 * 180.02562 * 16 15 14 18 18 F 1.39902 * 109.47201 * 59.99696 * 17 16 15 19 19 F 1.39908 * 109.47436 * 179.97438 * 17 16 15 20 20 F 1.39895 * 109.47054 * 299.99648 * 17 16 15 21 21 C 1.39026 * 120.22326 * 359.97438 * 15 14 13 22 22 C 1.38078 * 120.34894 * 0.02562 * 21 15 14 23 23 C 1.38775 * 120.12015 * 359.71693 * 22 21 15 24 24 N 1.39382 * 120.11457 * 180.29471 * 23 22 21 25 25 C 1.40215 * 119.29103 * 0.02562 * 12 11 10 26 26 N 1.31150 * 120.67214 * 359.97438 * 25 12 11 27 27 H 0.96991 * 120.00013 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.36468 * 0.04336 * 10 9 7 29 29 H 1.08001 * 120.69901 * 179.97438 * 11 10 9 30 30 H 1.07996 * 120.06661 * 359.97438 * 14 13 12 31 31 H 1.08007 * 119.82672 * 180.02562 * 21 15 14 32 32 H 1.07997 * 119.94137 * 180.02562 * 22 21 15 33 33 H 0.97005 * 120.00163 * 180.23465 * 24 23 22 34 34 H 0.96997 * 119.99614 * 0.24501 * 24 23 22 35 35 H 1.08003 * 119.65653 * 179.72232 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8827 2.3964 -1.2126 6 1 1.8827 2.3966 1.2124 7 6 2.0078 -1.2129 0.0005 8 1 3.0878 -1.2128 0.0010 9 6 1.3034 -2.4331 0.0005 10 6 2.0149 -3.6495 0.0005 11 6 1.3237 -4.8276 0.0000 12 6 -0.0794 -4.7835 -0.0011 13 6 -0.8658 -6.0343 -0.0022 14 6 -0.5813 -7.0411 -0.9271 15 6 -1.3206 -8.2093 -0.9224 16 8 -1.0434 -9.1902 -1.8226 17 6 -1.8461 -10.3709 -1.7631 18 9 -3.1874 -10.0343 -1.9749 19 9 -1.4293 -11.2686 -2.7519 20 9 -1.7078 -10.9658 -0.5045 21 6 -2.3458 -8.3850 0.0001 22 6 -2.6349 -7.3955 0.9187 23 6 -1.8984 -6.2194 0.9303 24 7 -2.1863 -5.2231 1.8615 25 6 -0.7267 -3.5397 -0.0021 26 7 -0.0348 -2.4255 -0.0016 27 1 -0.4850 0.8400 0.0004 28 1 3.0950 -3.6502 0.0012 29 1 1.8457 -5.7731 -0.0004 30 1 0.2148 -6.9075 -1.6446 31 1 -2.9190 -9.3004 -0.0017 32 1 -3.4324 -7.5391 1.6326 33 1 -1.6727 -4.4002 1.8660 34 1 -2.9003 -5.3527 2.5053 35 1 -1.8059 -3.4989 -0.0075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244196014.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:46 Heat of formation + Delta-G solvation = -154.104286 kcal Electronic energy + Delta-G solvation = -26277.349070 eV Core-core repulsion = 21824.339436 eV Total energy + Delta-G solvation = -4453.009634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.39477 -49.11855 -48.97742 -41.24477 -40.13667 -38.78756 -35.62966 -34.88875 -33.39863 -32.36434 -30.79138 -29.32997 -27.37529 -26.63431 -24.29053 -23.79303 -23.00778 -22.36577 -20.27623 -20.10468 -20.00835 -19.41682 -18.03083 -17.94287 -17.52209 -17.05390 -16.19449 -16.03797 -15.99408 -15.83797 -15.79048 -15.44988 -15.40735 -15.34423 -15.13301 -15.08838 -14.72410 -14.34618 -14.23690 -13.94887 -13.72881 -13.61880 -13.41582 -12.94356 -12.86415 -12.71303 -12.48356 -11.88501 -11.68822 -11.28022 -11.16797 -10.33918 -10.06384 -9.53118 -9.31863 -8.36260 -8.16656 -6.50232 0.15334 0.53320 0.59435 0.92474 1.19577 1.41764 1.52544 1.56598 1.88945 2.21004 2.69243 2.85105 2.86387 3.08289 3.10291 3.79538 3.83726 3.88956 4.11905 4.20996 4.25685 4.42334 4.54240 4.84134 4.89146 4.96413 5.03192 5.15839 5.25662 5.30708 5.40540 5.54303 5.69769 5.92457 5.96330 6.10588 6.24076 6.60508 6.67190 6.91876 7.04311 8.13683 8.38094 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.028865 B = 0.002684 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.815610 B =10429.766441 C =10910.107788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.023 3.977 3 Si 0.987 3.013 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.453 4.453 8 H 0.091 0.909 9 C 0.222 3.778 10 C -0.284 4.284 11 C -0.038 4.038 12 C -0.248 4.248 13 C -0.054 4.054 14 C -0.088 4.088 15 C 0.030 3.970 16 O -0.322 6.322 17 C 0.607 3.393 18 F -0.166 7.166 19 F -0.134 7.134 20 F -0.165 7.165 21 C -0.150 4.150 22 C -0.156 4.156 23 C 0.201 3.799 24 N -0.865 5.865 25 C 0.131 3.869 26 N -0.516 5.516 27 H 0.281 0.719 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.143 0.857 32 H 0.157 0.843 33 H 0.398 0.602 34 H 0.408 0.592 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.943 -14.241 1.100 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.200 4.200 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.483 4.483 8 H 0.109 0.891 9 C 0.098 3.902 10 C -0.307 4.307 11 C -0.062 4.062 12 C -0.254 4.254 13 C -0.059 4.059 14 C -0.107 4.107 15 C -0.013 4.013 16 O -0.243 6.243 17 C 0.517 3.483 18 F -0.148 7.148 19 F -0.115 7.115 20 F -0.147 7.147 21 C -0.169 4.169 22 C -0.179 4.179 23 C 0.095 3.905 24 N -0.405 5.405 25 C -0.036 4.036 26 N -0.228 5.228 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.139 0.861 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.175 0.825 33 H 0.228 0.772 34 H 0.238 0.762 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.397 -13.309 0.957 14.797 hybrid contribution 0.594 -0.152 0.072 0.617 sum -5.803 -13.460 1.029 14.694 Atomic orbital electron populations 1.70214 1.08852 1.29352 1.28175 1.27020 0.95762 1.04595 0.92591 0.85078 0.79445 0.75907 0.78840 1.17725 1.19195 1.18987 1.20052 0.95070 0.90543 1.42676 0.89085 1.19035 0.88931 0.93195 0.89008 1.21578 0.99565 0.93552 1.15988 1.20928 0.93225 0.97166 0.94857 1.19015 0.93119 0.92336 1.20928 1.18019 0.97480 0.93783 0.96643 1.20244 1.00365 0.90490 0.99636 1.18298 1.00713 0.88644 0.93688 1.86360 1.56632 1.24909 1.56366 1.19252 0.75474 0.79034 0.74580 1.93287 1.34837 1.92097 1.94591 1.93292 1.90526 1.65865 1.61818 1.93285 1.95293 1.84517 1.41645 1.21330 0.97722 1.01314 0.96525 1.20491 1.02812 0.92132 1.02494 1.18024 0.93289 0.89786 0.89438 1.42603 1.41505 1.19395 1.36985 1.22938 0.98954 0.87914 0.93774 1.68744 1.07563 1.27707 1.18789 0.90786 0.87193 0.86076 0.85503 0.83906 0.82524 0.77152 0.76209 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.41 11.44 21.84 0.25 -38.16 16 2 C 0.02 1.14 5.50 85.29 0.47 1.60 16 3 Si 0.99 36.39 29.56 68.60 2.03 38.42 16 4 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.27 -9.39 7.11 99.48 0.71 -8.69 16 7 C -0.45 -23.58 9.11 23.36 0.21 -23.37 16 8 H 0.09 4.43 7.85 -2.91 -0.02 4.40 16 9 C 0.22 11.81 6.55 40.15 0.26 12.07 16 10 C -0.28 -13.42 9.76 22.54 0.22 -13.20 16 11 C -0.04 -1.62 9.60 22.41 0.22 -1.40 16 12 C -0.25 -10.28 5.10 -19.76 -0.10 -10.38 16 13 C -0.05 -1.88 5.51 -19.91 -0.11 -1.99 16 14 C -0.09 -2.90 9.47 22.61 0.21 -2.68 16 15 C 0.03 0.87 6.47 22.46 0.15 1.02 16 16 O -0.32 -8.85 10.37 -93.37 -0.97 -9.82 16 17 C 0.61 13.61 3.42 113.37 0.39 14.00 16 18 F -0.17 -3.60 15.56 44.97 0.70 -2.90 16 19 F -0.13 -2.81 17.53 44.97 0.79 -2.02 16 20 F -0.17 -3.53 15.55 44.97 0.70 -2.83 16 21 C -0.15 -3.81 8.25 22.42 0.18 -3.63 16 22 C -0.16 -3.85 9.88 22.36 0.22 -3.63 16 23 C 0.20 6.00 6.69 38.59 0.26 6.26 16 24 N -0.86 -23.30 8.64 -50.73 -0.44 -23.74 16 25 C 0.13 5.95 8.89 85.28 0.76 6.71 16 26 N -0.52 -27.35 7.83 -188.16 -1.47 -28.82 16 27 H 0.28 13.03 8.29 -92.71 -0.77 12.26 16 28 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 29 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 30 H 0.13 4.19 8.05 -2.91 -0.02 4.17 16 31 H 0.14 3.06 5.06 -2.91 -0.01 3.04 16 32 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.40 12.68 6.00 -92.70 -0.56 12.12 16 34 H 0.41 8.08 8.84 -92.71 -0.82 7.26 16 35 H 0.13 5.49 7.54 -2.91 -0.02 5.47 16 Total: -1.00 -58.38 317.79 4.75 -53.63 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -0.18 Total: 34.86 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 3.34 Total: -18.62 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -1.66 Total: -90.72 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.97 Total: -9.82 kcal Atomic # 9 Polarization: -9.94 SS G_CDS: 2.19 Total: -7.75 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -58.38 4.75 -53.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244196014.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.471 kcal (2) G-P(sol) polarization free energy of solvation -58.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds