Wall clock time and date at job start Tue Mar 31 2020 14:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47069 * 274.98797 * 3 2 1 5 5 H 1.48503 * 109.47202 * 34.98419 * 3 2 1 6 6 H 1.48500 * 109.47364 * 154.98586 * 3 2 1 7 7 C 1.40031 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99775 * 173.73983 * 7 2 1 9 9 C 1.41430 * 120.00128 * 354.01276 * 7 2 1 10 10 C 1.40431 * 119.78019 * 185.72430 * 9 7 2 11 11 C 1.39398 * 118.82876 * 179.77890 * 10 9 7 12 12 C 1.48250 * 120.82687 * 180.24216 * 11 10 9 13 13 C 1.39329 * 120.13726 * 309.97886 * 12 11 10 14 14 C 1.38406 * 119.89515 * 179.72223 * 13 12 11 15 15 O 1.35996 * 119.91296 * 180.27509 * 14 13 12 16 16 C 1.42909 * 116.99988 * 180.30042 * 15 14 13 17 17 F 1.39901 * 109.46679 * 60.00210 * 16 15 14 18 18 F 1.39900 * 109.47140 * 180.02562 * 16 15 14 19 19 F 1.39894 * 109.47029 * 300.00050 * 16 15 14 20 20 C 1.38855 * 120.17421 * 0.57842 * 14 13 12 21 21 C 1.38103 * 120.27662 * 359.67431 * 20 14 13 22 22 C 1.38773 * 120.10246 * 0.04793 * 21 20 14 23 23 N 1.39615 * 120.08471 * 179.97438 * 22 21 20 24 24 C 1.40097 * 118.34564 * 0.48910 * 11 10 9 25 25 C 1.38464 * 119.41422 * 359.75168 * 24 11 10 26 26 N 1.31499 * 121.15733 * 0.02562 * 25 24 11 27 27 H 0.96992 * 120.00122 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.58880 * 0.02562 * 10 9 7 29 29 H 1.08001 * 120.05682 * 359.97438 * 13 12 11 30 30 H 1.07993 * 119.86077 * 179.70017 * 20 14 13 31 31 H 1.07997 * 119.94512 * 180.02562 * 21 20 14 32 32 H 0.97002 * 120.00239 * 180.02562 * 23 22 21 33 33 H 0.97001 * 120.00678 * 0.02562 * 23 22 21 34 34 H 1.08000 * 120.29380 * 179.73088 * 24 11 10 35 35 H 1.08005 * 119.41496 * 179.97438 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1073 -1.3948 5 1 1.4955 2.6200 0.8027 6 1 3.5877 1.4121 0.5920 7 6 2.0076 -1.2127 0.0005 8 1 3.0828 -1.2154 -0.1014 9 6 1.3063 -2.4341 0.1288 10 6 2.0189 -3.6381 0.2500 11 6 1.3077 -4.8300 0.3801 12 6 2.0151 -6.1257 0.5163 13 6 3.0260 -6.4684 -0.3791 14 6 3.6870 -7.6768 -0.2437 15 8 4.6777 -8.0092 -1.1141 16 6 5.3137 -9.2743 -0.9209 17 9 4.3628 -10.2951 -1.0259 18 9 6.3009 -9.4537 -1.8958 19 9 5.9003 -9.3122 0.3486 20 6 3.3371 -8.5535 0.7746 21 6 2.3325 -8.2235 1.6630 22 6 1.6661 -7.0123 1.5414 23 7 0.6502 -6.6792 2.4394 24 6 -0.0921 -4.7734 0.3735 25 6 -0.7225 -3.5473 0.2446 26 7 -0.0303 -2.4354 0.1278 27 1 -0.4850 0.8400 0.0004 28 1 3.0990 -3.6403 0.2466 29 1 3.2963 -5.7903 -1.1751 30 1 3.8529 -9.4973 0.8726 31 1 2.0649 -8.9092 2.4532 32 1 0.1850 -5.8325 2.3531 33 1 0.4096 -7.2945 3.1496 34 1 -0.6743 -5.6781 0.4678 35 1 -1.8016 -3.5037 0.2391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244197118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:48 Heat of formation + Delta-G solvation = -153.326503 kcal Electronic energy + Delta-G solvation = -26342.586029 eV Core-core repulsion = 21889.610122 eV Total energy + Delta-G solvation = -4452.975907 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.42112 -49.14206 -49.00304 -41.35317 -40.12810 -38.87295 -35.57622 -34.94314 -33.79116 -31.88354 -30.76104 -29.19146 -27.60048 -26.70229 -24.87025 -23.52867 -22.96596 -22.47379 -20.54859 -20.13251 -20.07280 -19.04093 -18.08577 -17.91869 -17.31996 -17.00241 -16.23749 -16.20138 -16.02637 -15.87175 -15.83992 -15.48375 -15.45643 -15.39216 -15.21087 -15.12128 -14.89700 -14.38312 -14.26591 -13.97709 -13.92361 -13.67447 -13.42942 -12.96429 -12.84020 -12.71662 -12.20507 -12.07309 -11.72510 -11.27468 -11.20231 -10.49223 -9.63838 -9.56076 -9.49767 -8.32376 -8.25652 -6.52987 0.03415 0.43262 0.55259 0.88676 1.16878 1.40901 1.51214 1.56176 1.84868 2.22769 2.65182 2.81728 2.84149 3.02691 3.04560 3.65753 3.71326 3.88599 4.02315 4.12173 4.24175 4.41650 4.67349 4.77056 4.88186 4.92154 4.97724 5.11011 5.17156 5.22340 5.40951 5.48518 5.63562 5.84261 5.87009 6.13168 6.27522 6.52309 6.71370 6.94716 7.01184 8.18933 8.43952 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.003112 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.932260 B = 8994.496947 C =10101.761326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.027 3.973 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.471 4.471 8 H 0.085 0.915 9 C 0.229 3.771 10 C -0.274 4.274 11 C 0.020 3.980 12 C -0.097 4.097 13 C -0.073 4.073 14 C 0.027 3.973 15 O -0.323 6.323 16 C 0.608 3.392 17 F -0.164 7.164 18 F -0.133 7.133 19 F -0.165 7.165 20 C -0.135 4.135 21 C -0.156 4.156 22 C 0.220 3.780 23 N -0.861 5.861 24 C -0.297 4.297 25 C 0.111 3.889 26 N -0.521 5.521 27 H 0.280 0.720 28 H 0.101 0.899 29 H 0.124 0.876 30 H 0.149 0.851 31 H 0.166 0.834 32 H 0.403 0.597 33 H 0.410 0.590 34 H 0.126 0.874 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 -16.815 3.161 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.195 4.195 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.502 4.502 8 H 0.103 0.897 9 C 0.104 3.896 10 C -0.297 4.297 11 C 0.014 3.986 12 C -0.103 4.103 13 C -0.093 4.093 14 C -0.016 4.016 15 O -0.244 6.244 16 C 0.517 3.483 17 F -0.146 7.146 18 F -0.114 7.114 19 F -0.147 7.147 20 C -0.155 4.155 21 C -0.178 4.178 22 C 0.112 3.888 23 N -0.402 5.402 24 C -0.320 4.320 25 C -0.054 4.054 26 N -0.234 5.234 27 H 0.090 0.910 28 H 0.119 0.881 29 H 0.142 0.858 30 H 0.166 0.834 31 H 0.183 0.817 32 H 0.235 0.765 33 H 0.241 0.759 34 H 0.144 0.856 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.065 -15.802 2.928 16.850 hybrid contribution 0.594 -0.092 0.065 0.605 sum 5.659 -15.894 2.994 17.135 Atomic orbital electron populations 1.70211 1.08786 1.29144 1.29458 1.26937 0.95702 1.04377 0.92466 0.85173 0.79128 0.75956 0.79339 1.18765 1.19091 1.18058 1.19986 0.95086 0.90745 1.44374 0.89652 1.18905 0.88821 0.92831 0.89030 1.21927 0.98751 0.93157 1.15860 1.18605 0.93156 0.90799 0.96043 1.18144 0.99454 0.94617 0.98035 1.20158 0.94941 0.94347 0.99815 1.18224 0.92746 0.96927 0.93704 1.86374 1.50094 1.33533 1.54354 1.19236 0.76433 0.78109 0.74496 1.93290 1.64751 1.60879 1.95684 1.93295 1.60760 1.94406 1.62978 1.93288 1.84710 1.95976 1.40701 1.21422 0.99742 0.99469 0.94820 1.20585 0.98399 0.96176 1.02683 1.17871 0.89361 0.92400 0.89187 1.42744 1.39116 1.24795 1.33559 1.21532 0.93240 0.98400 1.18825 1.22925 0.99901 0.88866 0.93682 1.68680 1.07793 1.28529 1.18446 0.90982 0.88129 0.85774 0.83353 0.81682 0.76540 0.75888 0.85590 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.44 11.49 21.84 0.25 -40.19 16 2 C 0.03 1.38 5.49 85.29 0.47 1.85 16 3 Si 0.98 38.12 29.56 68.60 2.03 40.14 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 6 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 7 C -0.47 -25.67 9.14 23.49 0.21 -25.45 16 8 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 9 C 0.23 12.59 6.55 40.18 0.26 12.85 16 10 C -0.27 -13.41 9.37 23.08 0.22 -13.19 16 11 C 0.02 0.86 5.08 -19.88 -0.10 0.76 16 12 C -0.10 -3.43 5.53 -19.94 -0.11 -3.54 16 13 C -0.07 -2.49 9.48 22.57 0.21 -2.27 16 14 C 0.03 0.79 6.48 22.46 0.15 0.94 16 15 O -0.32 -8.94 10.37 -93.50 -0.97 -9.91 16 16 C 0.61 13.42 3.42 113.37 0.39 13.81 16 17 F -0.16 -3.38 15.55 44.97 0.70 -2.68 16 18 F -0.13 -2.80 17.53 44.97 0.79 -2.01 16 19 F -0.16 -3.45 15.55 44.97 0.70 -2.75 16 20 C -0.14 -3.27 8.25 22.39 0.18 -3.09 16 21 C -0.16 -3.53 9.88 22.37 0.22 -3.31 16 22 C 0.22 6.19 6.70 38.44 0.26 6.45 16 23 N -0.86 -20.65 8.67 -50.85 -0.44 -21.09 16 24 C -0.30 -12.03 7.84 22.77 0.18 -11.85 16 25 C 0.11 5.07 11.17 84.80 0.95 6.02 16 26 N -0.52 -28.47 7.87 -189.40 -1.49 -29.96 16 27 H 0.28 13.50 8.29 -92.71 -0.77 12.73 16 28 H 0.10 4.77 8.06 -2.91 -0.02 4.74 16 29 H 0.12 4.42 8.05 -2.91 -0.02 4.39 16 30 H 0.15 2.93 5.06 -2.91 -0.01 2.91 16 31 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.40 11.24 5.98 -92.71 -0.55 10.68 16 33 H 0.41 6.73 8.84 -92.71 -0.82 5.91 16 34 H 0.13 4.34 7.55 -2.91 -0.02 4.31 16 35 H 0.14 5.63 8.06 -2.91 -0.02 5.60 16 Total: -1.00 -62.42 318.08 4.88 -57.55 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -0.18 Total: 30.93 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 3.49 Total: -20.03 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -1.68 Total: -91.24 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.97 Total: -9.91 kcal Atomic # 9 Polarization: -9.63 SS G_CDS: 2.19 Total: -7.45 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.14 kcal Total: -62.42 4.88 -57.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244197118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.779 kcal (2) G-P(sol) polarization free energy of solvation -62.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds