Wall clock time and date at job start Tue Mar 31 2020 14:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 120.00277 * 2 1 4 4 H 1.48496 * 109.46740 * 275.40908 * 3 2 1 5 5 H 1.48497 * 109.47085 * 35.40726 * 3 2 1 6 6 H 1.48500 * 109.47202 * 155.41176 * 3 2 1 7 7 C 1.39970 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99720 * 341.80408 * 7 2 1 9 9 C 1.41005 * 120.00284 * 161.80143 * 7 2 1 10 10 C 1.41341 * 120.54644 * 150.32538 * 9 7 2 11 11 C 1.36528 * 118.42549 * 179.97438 * 10 9 7 12 12 C 1.40009 * 119.46541 * 0.27594 * 11 10 9 13 13 C 1.47763 * 119.46325 * 179.72743 * 12 11 10 14 14 C 1.39757 * 120.05252 * 359.72240 * 13 12 11 15 15 C 1.37768 * 120.02162 * 179.76803 * 14 13 12 16 16 C 1.39034 * 120.12194 * 0.51296 * 15 14 13 17 17 N 1.39492 * 119.94716 * 179.76515 * 16 15 14 18 18 C 1.39619 * 120.10192 * 359.73754 * 16 15 14 19 19 O 1.36005 * 120.00943 * 180.02562 * 18 16 15 20 20 C 1.42892 * 117.00241 * 179.97438 * 19 18 16 21 21 F 1.39904 * 109.47217 * 59.99635 * 20 19 18 22 22 F 1.39903 * 109.47407 * 180.02562 * 20 19 18 23 23 F 1.39905 * 109.47050 * 299.99820 * 20 19 18 24 24 C 1.38073 * 119.98302 * 0.02562 * 18 16 15 25 25 N 1.33100 * 121.07451 * 359.42406 * 12 11 10 26 26 C 1.31238 * 121.71796 * 0.58882 * 25 12 11 27 27 H 0.97008 * 119.99381 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.78977 * 359.96020 * 10 9 7 29 29 H 1.07998 * 120.27084 * 180.02562 * 11 10 9 30 30 H 1.08006 * 119.98691 * 0.02562 * 14 13 12 31 31 H 1.07998 * 119.94052 * 180.25086 * 15 14 13 32 32 H 0.97001 * 119.99979 * 179.97438 * 17 16 15 33 33 H 0.97003 * 119.99977 * 359.97438 * 17 16 15 34 34 H 1.08003 * 120.06395 * 179.97438 * 24 18 16 35 35 H 1.08000 * 119.79686 * 179.72124 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1123 -1.3938 5 1 1.5016 2.6170 0.8112 6 1 3.5924 1.4098 0.5826 7 6 2.0081 -1.2122 0.0005 8 1 1.5085 -2.1240 0.2930 9 6 3.3652 -1.2430 -0.3808 10 6 4.2424 -2.2087 0.1630 11 6 5.5478 -2.1994 -0.2370 12 6 5.9781 -1.2396 -1.1611 13 6 7.3922 -1.2257 -1.5894 14 6 8.2903 -2.1616 -1.0690 15 6 9.6076 -2.1512 -1.4724 16 6 10.0490 -1.2038 -2.3893 17 7 11.3846 -1.1935 -2.7915 18 6 9.1574 -0.2632 -2.9085 19 8 9.5912 0.6624 -3.8057 20 6 8.6245 1.5937 -4.2957 21 9 8.0976 2.3252 -3.2259 22 9 9.2357 2.4667 -5.2022 23 9 7.5937 0.9005 -4.9393 24 6 7.8352 -0.2728 -2.5108 25 7 5.1328 -0.3431 -1.6645 26 6 3.8693 -0.3116 -1.3111 27 1 -0.4849 0.8402 0.0004 28 1 3.8887 -2.9365 0.8781 29 1 6.2437 -2.9240 0.1591 30 1 7.9506 -2.8959 -0.3535 31 1 10.2995 -2.8776 -1.0725 32 1 11.6934 -0.5332 -3.4314 33 1 12.0047 -1.8468 -2.4312 34 1 7.1445 0.4545 -2.9113 35 1 3.2116 0.4323 -1.7359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244260153.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:46 Heat of formation + Delta-G solvation = -144.903553 kcal Electronic energy + Delta-G solvation = -26849.434738 eV Core-core repulsion = 22396.824077 eV Total energy + Delta-G solvation = -4452.610660 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.28985 -48.06592 -47.83871 -40.15325 -38.75479 -37.36305 -34.79680 -33.84044 -31.57161 -30.89419 -30.09058 -28.34123 -26.02543 -25.01233 -23.13888 -22.38726 -21.80196 -20.73786 -19.28724 -18.97860 -18.85408 -17.83340 -17.00911 -16.95153 -16.29610 -15.67311 -15.11147 -14.98998 -14.79249 -14.66288 -14.38670 -14.29808 -14.28689 -14.09167 -13.99754 -13.93297 -13.39137 -13.13690 -12.91692 -12.86900 -12.67385 -12.25126 -12.01878 -11.43173 -11.26731 -11.12698 -10.98073 -10.58480 -10.41269 -10.12232 -9.49263 -8.70254 -8.55333 -8.27016 -8.08882 -7.24538 -6.99299 -4.68964 1.39412 1.51302 1.61210 2.49917 2.58720 3.01748 3.01964 3.10956 3.19648 3.79258 3.86133 3.90126 3.93698 4.15882 4.50003 4.93584 5.06573 5.21376 5.33623 5.37473 5.68290 5.80125 5.88873 6.09732 6.21865 6.27410 6.39497 6.52688 6.55975 6.78004 6.89580 6.99463 7.04474 7.32774 7.44973 7.53834 7.75249 7.77577 7.98861 8.28870 8.43121 9.30210 9.74770 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.004123 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.078593 B = 6789.003377 C = 8239.509345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.082 3.918 3 Si 0.910 3.090 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.416 4.416 8 H 0.097 0.903 9 C 0.046 3.954 10 C -0.183 4.183 11 C -0.104 4.104 12 C -0.003 4.003 13 C 0.000 4.000 14 C -0.097 4.097 15 C -0.163 4.163 16 C 0.196 3.804 17 N -0.877 5.877 18 C 0.021 3.979 19 O -0.319 6.319 20 C 0.604 3.396 21 F -0.163 7.163 22 F -0.141 7.141 23 F -0.162 7.162 24 C -0.134 4.134 25 N -0.438 5.438 26 C -0.025 4.025 27 H 0.292 0.708 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.399 0.601 33 H 0.397 0.603 34 H 0.143 0.857 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.964 0.320 -4.386 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.443 4.443 8 H 0.115 0.885 9 C 0.040 3.960 10 C -0.208 4.208 11 C -0.124 4.124 12 C -0.136 4.136 13 C -0.003 4.003 14 C -0.116 4.116 15 C -0.186 4.186 16 C 0.092 3.908 17 N -0.418 5.418 18 C -0.024 4.024 19 O -0.240 6.240 20 C 0.513 3.487 21 F -0.145 7.145 22 F -0.122 7.122 23 F -0.144 7.144 24 C -0.154 4.154 25 N -0.145 5.145 26 C -0.190 4.190 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.227 0.773 33 H 0.225 0.775 34 H 0.160 0.840 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 17.080 1.042 -5.027 17.834 hybrid contribution -0.166 0.355 0.388 0.552 sum 16.913 1.397 -4.639 17.593 Atomic orbital electron populations 1.69672 1.08220 1.31105 1.31669 1.26288 0.94849 1.02154 0.90753 0.86324 0.81208 0.79269 0.79718 1.18696 1.21077 1.16729 1.19552 0.92807 0.96350 1.35621 0.88475 1.18692 0.93908 0.92459 0.90916 1.21022 0.92848 1.03434 1.03455 1.21251 0.96220 0.97682 0.97209 1.18684 0.91733 0.99085 1.04113 1.18201 0.92100 0.94388 0.95580 1.21016 0.92035 0.98706 0.99883 1.20274 0.96722 1.00435 1.01187 1.16912 0.84180 0.93844 0.95880 1.42134 1.06966 1.40084 1.52664 1.17980 0.93914 0.93282 0.97272 1.86191 1.36023 1.42598 1.59180 1.19312 0.75815 0.77671 0.75859 1.93323 1.86474 1.78278 1.56414 1.93264 1.83885 1.68254 1.66827 1.93325 1.59703 1.79219 1.82199 1.21451 0.92463 1.01555 0.99908 1.66932 1.03917 1.20737 1.22922 1.22442 0.91713 1.03487 1.01381 0.89726 0.86995 0.87324 0.85268 0.85280 0.77287 0.77497 0.83953 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.43 13.93 55.55 0.77 -18.66 16 2 C 0.08 2.01 5.41 -17.33 -0.09 1.92 16 3 Si 0.91 19.97 24.52 -169.99 -4.17 15.80 16 4 H -0.26 -5.64 6.71 56.52 0.38 -5.26 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 6 H -0.24 -5.67 6.86 56.52 0.39 -5.28 16 7 C -0.42 -10.50 9.58 -37.89 -0.36 -10.87 16 8 H 0.10 2.52 8.06 -52.48 -0.42 2.10 16 9 C 0.05 1.11 5.12 -106.64 -0.55 0.57 16 10 C -0.18 -4.02 9.87 -39.02 -0.39 -4.41 16 11 C -0.10 -2.11 9.38 -39.54 -0.37 -2.48 16 12 C 0.00 -0.06 6.74 -82.76 -0.56 -0.61 16 13 C 0.00 0.00 5.88 -104.86 -0.62 -0.61 16 14 C -0.10 -1.46 9.40 -39.19 -0.37 -1.83 16 15 C -0.16 -2.10 9.87 -39.46 -0.39 -2.49 16 16 C 0.20 2.63 6.77 -83.56 -0.57 2.07 16 17 N -0.88 -8.60 9.07 32.54 0.30 -8.31 16 18 C 0.02 0.33 6.50 -39.13 -0.25 0.08 16 19 O -0.32 -4.62 9.60 -19.76 -0.19 -4.81 16 20 C 0.60 8.71 3.42 101.05 0.35 9.05 16 21 F -0.16 -2.55 15.56 2.25 0.04 -2.51 16 22 F -0.14 -1.78 17.53 2.25 0.04 -1.74 16 23 F -0.16 -2.53 15.56 2.25 0.04 -2.50 16 24 C -0.13 -2.46 7.77 -39.07 -0.30 -2.76 16 25 N -0.44 -10.52 9.38 -9.12 -0.09 -10.61 16 26 C -0.02 -0.61 8.36 -16.77 -0.14 -0.75 16 27 H 0.29 6.50 8.30 -40.82 -0.34 6.16 16 28 H 0.11 2.23 8.06 -52.49 -0.42 1.81 16 29 H 0.11 1.80 6.14 -52.49 -0.32 1.48 16 30 H 0.13 1.71 6.14 -52.48 -0.32 1.39 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.40 3.68 8.17 -40.82 -0.33 3.34 16 33 H 0.40 2.81 8.84 -40.82 -0.36 2.45 16 34 H 0.14 2.80 4.54 -52.48 -0.24 2.56 16 35 H 0.13 3.19 4.72 -52.49 -0.25 2.94 16 LS Contribution 310.91 15.07 4.69 4.69 Total: -1.00 -27.35 310.91 -5.45 -32.80 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -2.26 Total: 8.97 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -4.61 Total: -13.13 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.98 Total: -37.58 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.19 Total: -4.81 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.11 Total: -6.75 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.17 Total: 15.80 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.35 -5.45 -32.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244260153.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.101 kcal (2) G-P(sol) polarization free energy of solvation -27.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds