Wall clock time and date at job start Tue Mar 31 2020 14:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 120.00277 * 2 1 4 4 H 1.48496 * 109.46740 * 275.40908 * 3 2 1 5 5 H 1.48497 * 109.47085 * 35.40726 * 3 2 1 6 6 H 1.48500 * 109.47202 * 155.41176 * 3 2 1 7 7 C 1.39970 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99720 * 341.80408 * 7 2 1 9 9 C 1.41005 * 120.00284 * 161.80143 * 7 2 1 10 10 C 1.41341 * 120.54644 * 150.32538 * 9 7 2 11 11 C 1.36528 * 118.42549 * 179.97438 * 10 9 7 12 12 C 1.40009 * 119.46541 * 0.27594 * 11 10 9 13 13 C 1.47763 * 119.46325 * 179.72743 * 12 11 10 14 14 C 1.39757 * 120.05252 * 359.72240 * 13 12 11 15 15 C 1.37768 * 120.02162 * 179.76803 * 14 13 12 16 16 C 1.39034 * 120.12194 * 0.51296 * 15 14 13 17 17 N 1.39492 * 119.94716 * 179.76515 * 16 15 14 18 18 C 1.39619 * 120.10192 * 359.73754 * 16 15 14 19 19 O 1.36005 * 120.00943 * 180.02562 * 18 16 15 20 20 C 1.42892 * 117.00241 * 179.97438 * 19 18 16 21 21 F 1.39904 * 109.47217 * 59.99635 * 20 19 18 22 22 F 1.39903 * 109.47407 * 180.02562 * 20 19 18 23 23 F 1.39905 * 109.47050 * 299.99820 * 20 19 18 24 24 C 1.38073 * 119.98302 * 0.02562 * 18 16 15 25 25 N 1.33100 * 121.07451 * 359.42406 * 12 11 10 26 26 C 1.31238 * 121.71796 * 0.58882 * 25 12 11 27 27 H 0.97008 * 119.99381 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.78977 * 359.96020 * 10 9 7 29 29 H 1.07998 * 120.27084 * 180.02562 * 11 10 9 30 30 H 1.08006 * 119.98691 * 0.02562 * 14 13 12 31 31 H 1.07998 * 119.94052 * 180.25086 * 15 14 13 32 32 H 0.97001 * 119.99979 * 179.97438 * 17 16 15 33 33 H 0.97003 * 119.99977 * 359.97438 * 17 16 15 34 34 H 1.08003 * 120.06395 * 179.97438 * 24 18 16 35 35 H 1.08000 * 119.79686 * 179.72124 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1123 -1.3938 5 1 1.5016 2.6170 0.8112 6 1 3.5924 1.4098 0.5826 7 6 2.0081 -1.2122 0.0005 8 1 1.5085 -2.1240 0.2930 9 6 3.3652 -1.2430 -0.3808 10 6 4.2424 -2.2087 0.1630 11 6 5.5478 -2.1994 -0.2370 12 6 5.9781 -1.2396 -1.1611 13 6 7.3922 -1.2257 -1.5894 14 6 8.2903 -2.1616 -1.0690 15 6 9.6076 -2.1512 -1.4724 16 6 10.0490 -1.2038 -2.3893 17 7 11.3846 -1.1935 -2.7915 18 6 9.1574 -0.2632 -2.9085 19 8 9.5912 0.6624 -3.8057 20 6 8.6245 1.5937 -4.2957 21 9 8.0976 2.3252 -3.2259 22 9 9.2357 2.4667 -5.2022 23 9 7.5937 0.9005 -4.9393 24 6 7.8352 -0.2728 -2.5108 25 7 5.1328 -0.3431 -1.6645 26 6 3.8693 -0.3116 -1.3111 27 1 -0.4849 0.8402 0.0004 28 1 3.8887 -2.9365 0.8781 29 1 6.2437 -2.9240 0.1591 30 1 7.9506 -2.8959 -0.3535 31 1 10.2995 -2.8776 -1.0725 32 1 11.6934 -0.5332 -3.4314 33 1 12.0047 -1.8468 -2.4312 34 1 7.1445 0.4545 -2.9113 35 1 3.2116 0.4323 -1.7359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244260153.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:45 Heat of formation + Delta-G solvation = -162.799588 kcal Electronic energy + Delta-G solvation = -26850.210768 eV Core-core repulsion = 22396.824077 eV Total energy + Delta-G solvation = -4453.386691 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.45916 -49.19293 -49.05597 -41.37292 -40.40443 -38.57414 -36.21209 -35.34539 -33.29823 -32.49507 -31.30944 -29.70548 -27.32934 -26.52058 -24.61065 -23.84576 -23.22575 -22.22835 -20.55216 -20.15955 -20.03238 -19.59926 -18.23282 -18.05468 -17.72709 -17.15506 -16.47635 -16.28337 -16.26322 -15.87199 -15.61576 -15.55829 -15.48350 -15.47086 -15.25230 -15.20088 -14.92958 -14.63698 -14.52253 -14.26491 -14.01829 -13.68472 -13.45541 -13.03688 -12.89822 -12.69153 -12.52471 -12.11303 -11.89209 -11.71263 -11.24611 -10.45220 -10.02772 -9.75565 -9.66766 -9.05875 -8.24076 -6.54500 -0.01169 0.33060 0.45758 0.77019 0.95261 1.23597 1.35614 1.41265 1.85940 2.01948 2.45108 2.77667 2.82576 2.94637 3.00967 3.56960 3.63533 3.78936 3.86218 4.24579 4.26240 4.44025 4.51653 4.59769 4.73331 4.79371 4.94246 5.05762 5.17874 5.30112 5.40365 5.48343 5.62516 5.83429 5.86458 6.00561 6.12875 6.47525 6.52935 6.61611 7.01288 7.52888 8.00208 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.004123 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.078593 B = 6789.003377 C = 8239.509345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.059 3.941 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.454 4.454 8 H 0.075 0.925 9 C 0.028 3.972 10 C -0.181 4.181 11 C -0.105 4.105 12 C 0.015 3.985 13 C -0.050 4.050 14 C -0.078 4.078 15 C -0.156 4.156 16 C 0.217 3.783 17 N -0.857 5.857 18 C 0.000 4.000 19 O -0.311 6.311 20 C 0.606 3.394 21 F -0.173 7.173 22 F -0.128 7.128 23 F -0.172 7.172 24 C -0.143 4.143 25 N -0.466 5.466 26 C -0.047 4.047 27 H 0.300 0.700 28 H 0.131 0.869 29 H 0.157 0.843 30 H 0.154 0.846 31 H 0.176 0.824 32 H 0.405 0.595 33 H 0.416 0.584 34 H 0.119 0.881 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.608 -1.024 -4.176 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.159 4.159 3 Si 0.779 3.221 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.483 4.483 8 H 0.094 0.906 9 C 0.024 3.976 10 C -0.206 4.206 11 C -0.124 4.124 12 C -0.121 4.121 13 C -0.053 4.053 14 C -0.098 4.098 15 C -0.178 4.178 16 C 0.110 3.890 17 N -0.398 5.398 18 C -0.046 4.046 19 O -0.231 6.231 20 C 0.515 3.485 21 F -0.155 7.155 22 F -0.110 7.110 23 F -0.154 7.154 24 C -0.163 4.163 25 N -0.174 5.174 26 C -0.209 4.209 27 H 0.111 0.889 28 H 0.149 0.851 29 H 0.174 0.826 30 H 0.172 0.828 31 H 0.193 0.807 32 H 0.234 0.766 33 H 0.247 0.753 34 H 0.137 0.863 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 21.727 -0.285 -4.833 22.260 hybrid contribution -1.008 0.640 0.182 1.207 sum 20.719 0.354 -4.651 21.238 Atomic orbital electron populations 1.69675 1.08802 1.32035 1.34157 1.26667 0.95241 1.03613 0.90423 0.85657 0.79274 0.77653 0.79565 1.18824 1.19037 1.19062 1.19453 0.93733 0.96118 1.39007 0.90647 1.18824 0.94058 0.93470 0.91289 1.21394 0.93416 1.02714 1.03108 1.21685 0.96239 0.98074 0.96428 1.19501 0.93028 0.97365 1.02205 1.18243 0.91166 0.97367 0.98510 1.21299 0.92269 0.97311 0.98920 1.20729 0.96477 1.00531 1.00071 1.17169 0.85127 0.92300 0.94360 1.42185 1.05746 1.40168 1.51733 1.18085 0.93639 0.94575 0.98341 1.86185 1.35524 1.42415 1.59005 1.19292 0.75714 0.77705 0.75748 1.93304 1.86705 1.78477 1.56974 1.93289 1.83559 1.67818 1.66316 1.93306 1.60291 1.79477 1.82319 1.21348 0.93419 1.01292 1.00262 1.66992 1.03967 1.22381 1.24030 1.22389 0.92244 1.04089 1.02152 0.88884 0.85073 0.82557 0.82833 0.80711 0.76598 0.75291 0.86314 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.79 13.93 21.83 0.30 -42.49 16 2 C 0.06 3.05 5.41 85.26 0.46 3.51 16 3 Si 0.95 43.08 24.52 68.60 1.68 44.76 16 4 H -0.26 -11.68 6.71 99.48 0.67 -11.02 16 5 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.27 -12.80 6.86 99.48 0.68 -12.12 16 7 C -0.45 -24.30 9.58 23.37 0.22 -24.08 16 8 H 0.08 4.20 8.06 -2.91 -0.02 4.18 16 9 C 0.03 1.43 5.12 -21.17 -0.11 1.32 16 10 C -0.18 -7.88 9.87 22.63 0.22 -7.65 16 11 C -0.10 -4.03 9.38 22.30 0.21 -3.82 16 12 C 0.02 0.66 6.74 41.90 0.28 0.94 16 13 C -0.05 -1.76 5.88 -20.02 -0.12 -1.88 16 14 C -0.08 -1.99 9.40 22.53 0.21 -1.78 16 15 C -0.16 -3.05 9.87 22.35 0.22 -2.83 16 16 C 0.22 4.80 6.77 38.45 0.26 5.06 16 17 N -0.86 -12.13 9.07 -50.97 -0.46 -12.59 16 18 C 0.00 -0.01 6.50 22.56 0.15 0.13 16 19 O -0.31 -8.34 9.60 -93.60 -0.90 -9.24 16 20 C 0.61 17.03 3.42 113.37 0.39 17.42 16 21 F -0.17 -5.41 15.56 44.97 0.70 -4.71 16 22 F -0.13 -3.09 17.53 44.97 0.79 -2.30 16 23 F -0.17 -5.38 15.56 44.97 0.70 -4.68 16 24 C -0.14 -5.08 7.77 22.60 0.18 -4.91 16 25 N -0.47 -22.85 9.38 -182.76 -1.71 -24.57 16 26 C -0.05 -2.41 8.36 85.45 0.71 -1.70 16 27 H 0.30 13.97 8.30 -92.70 -0.77 13.20 16 28 H 0.13 5.10 8.06 -2.91 -0.02 5.08 16 29 H 0.16 4.41 6.14 -2.91 -0.02 4.39 16 30 H 0.15 3.09 6.14 -2.91 -0.02 3.08 16 31 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 32 H 0.41 5.50 8.17 -92.71 -0.76 4.74 16 33 H 0.42 3.24 8.84 -92.71 -0.82 2.42 16 34 H 0.12 4.74 4.54 -2.91 -0.01 4.73 16 35 H 0.12 6.28 4.72 -2.91 -0.01 6.27 16 Total: -1.00 -63.40 310.91 3.97 -59.43 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.42 Total: 16.62 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 3.29 Total: -20.25 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -1.87 Total: -79.64 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.90 Total: -9.24 kcal Atomic # 9 Polarization: -13.88 SS G_CDS: 2.19 Total: -11.69 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.68 Total: 44.76 kcal Total: -63.40 3.97 -59.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244260153.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.366 kcal (2) G-P(sol) polarization free energy of solvation -63.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds