Wall clock time and date at job start Tue Mar 31 2020 14:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86792 * 120.00279 * 2 1 4 4 H 1.48497 * 109.47477 * 270.00356 * 3 2 1 5 5 H 1.48499 * 109.47347 * 30.00465 * 3 2 1 6 6 H 1.48505 * 109.46930 * 150.00199 * 3 2 1 7 7 C 1.40050 * 119.99316 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99336 * 163.15957 * 7 2 1 9 9 C 1.41521 * 120.00368 * 343.16511 * 7 2 1 10 10 C 1.41168 * 120.98455 * 336.09430 * 9 7 2 11 11 C 1.37707 * 119.08807 * 180.02562 * 10 9 7 12 12 N 1.31940 * 121.16239 * 359.73225 * 11 10 9 13 13 C 1.32828 * 122.19894 * 0.56046 * 12 11 10 14 14 C 1.48266 * 119.61643 * 179.70804 * 13 12 11 15 15 C 1.39410 * 120.02910 * 184.73244 * 14 13 12 16 16 C 1.37933 * 120.03953 * 180.02562 * 15 14 13 17 17 C 1.38867 * 120.10407 * 0.02562 * 16 15 14 18 18 N 1.39748 * 119.96491 * 179.97438 * 17 16 15 19 19 C 1.39448 * 120.06745 * 0.02562 * 17 16 15 20 20 O 1.36013 * 120.02594 * 179.97438 * 19 17 16 21 21 C 1.42889 * 117.00462 * 179.97438 * 20 19 17 22 22 F 1.39903 * 109.47303 * 59.99838 * 21 20 19 23 23 F 1.39903 * 109.47399 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47382 * 299.99889 * 21 20 19 25 25 C 1.38227 * 119.95850 * 359.97145 * 19 17 16 26 26 C 1.38961 * 120.75820 * 359.43927 * 13 12 11 27 27 H 0.97005 * 119.99538 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.45488 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.41667 * 179.97438 * 11 10 9 30 30 H 1.08007 * 119.98374 * 0.02562 * 15 14 13 31 31 H 1.08007 * 119.94545 * 179.74070 * 16 15 14 32 32 H 0.96996 * 120.00409 * 0.02562 * 18 17 16 33 33 H 0.97003 * 119.99409 * 179.97438 * 18 17 16 34 34 H 1.08005 * 120.05481 * 180.02562 * 25 19 17 35 35 H 1.08000 * 120.62012 * 180.25085 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4391 2.6526 0.7001 6 1 3.5391 1.4399 0.7000 7 6 2.0075 -1.2129 -0.0005 8 1 3.0528 -1.2329 -0.2715 9 6 1.3454 -2.4124 0.3539 10 6 0.1907 -2.3925 1.1658 11 6 -0.4223 -3.5830 1.4872 12 7 0.0479 -4.7341 1.0457 13 6 1.1334 -4.8098 0.2839 14 6 1.6154 -6.1347 -0.1751 15 6 2.8073 -6.2336 -0.8914 16 6 3.2557 -7.4659 -1.3190 17 6 2.5212 -8.6104 -1.0376 18 7 2.9779 -9.8574 -1.4727 19 6 1.3278 -8.5164 -0.3223 20 8 0.6088 -9.6378 -0.0477 21 6 -0.6033 -9.4670 0.6895 22 9 -1.4690 -8.6308 -0.0236 23 9 -1.2116 -10.7122 0.8818 24 9 -0.3164 -8.8909 1.9317 25 6 0.8760 -7.2828 0.1075 26 6 1.8191 -3.6612 -0.0924 27 1 -0.4850 0.8401 0.0004 28 1 -0.2064 -1.4565 1.5299 29 1 -1.3058 -3.5740 2.1084 30 1 3.3800 -5.3448 -1.1118 31 1 4.1771 -7.5404 -1.8775 32 1 3.8077 -9.9234 -1.9706 33 1 2.4654 -10.6572 -1.2760 34 1 -0.0478 -7.2082 0.6620 35 1 2.6991 -3.7251 -0.7152 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244261779.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:49 Heat of formation + Delta-G solvation = -146.523139 kcal Electronic energy + Delta-G solvation = -26625.426795 eV Core-core repulsion = 22172.745904 eV Total energy + Delta-G solvation = -4452.680891 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.29434 -48.06927 -47.84265 -40.17061 -38.47234 -37.30757 -34.73274 -33.95200 -30.90723 -30.43262 -30.06273 -27.38520 -26.15371 -25.60320 -22.84020 -22.81419 -21.20433 -20.77642 -19.26254 -18.98211 -18.87047 -17.50176 -16.94938 -16.88528 -15.79332 -15.48443 -15.11934 -14.84336 -14.67676 -14.50519 -14.39218 -14.30496 -14.29186 -14.01188 -14.00046 -13.93798 -13.36140 -13.15039 -12.83904 -12.76464 -12.44595 -12.14548 -11.60432 -11.44103 -11.24873 -11.11258 -10.86093 -10.49113 -10.31898 -9.88140 -9.44793 -8.55276 -8.10773 -8.03935 -8.00239 -6.94292 -6.80139 -4.64100 1.43576 1.50677 1.60748 2.71679 2.86080 2.99758 3.01024 3.03760 3.20588 3.81746 3.82936 3.92757 3.98679 4.19230 4.66176 4.93538 5.03986 5.22717 5.39365 5.65277 5.71929 5.86511 6.06480 6.16607 6.43796 6.51955 6.61860 6.75769 6.85529 6.97547 7.07151 7.14065 7.30453 7.42929 7.49583 7.73302 7.80600 8.05430 8.40218 8.68722 8.69644 9.53619 10.02480 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020377 B = 0.003267 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.762321 B = 8567.801244 C = 9696.517109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.127 3.873 10 C -0.209 4.209 11 C 0.088 3.912 12 N -0.565 5.565 13 C 0.156 3.844 14 C -0.030 4.030 15 C -0.074 4.074 16 C -0.172 4.172 17 C 0.211 3.789 18 N -0.876 5.876 19 C 0.011 3.989 20 O -0.319 6.319 21 C 0.604 3.396 22 F -0.163 7.163 23 F -0.141 7.141 24 F -0.162 7.162 25 C -0.113 4.113 26 C -0.252 4.252 27 H 0.284 0.716 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.398 0.602 33 H 0.400 0.600 34 H 0.146 0.854 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 -14.363 -1.624 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.119 3.881 10 C -0.231 4.231 11 C -0.064 4.064 12 N -0.280 5.280 13 C 0.023 3.977 14 C -0.033 4.033 15 C -0.093 4.093 16 C -0.194 4.194 17 C 0.106 3.894 18 N -0.417 5.417 19 C -0.035 4.035 20 O -0.240 6.240 21 C 0.513 3.487 22 F -0.145 7.145 23 F -0.122 7.122 24 F -0.144 7.144 25 C -0.133 4.133 26 C -0.276 4.276 27 H 0.095 0.905 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.226 0.774 33 H 0.228 0.772 34 H 0.164 0.836 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.403 -15.105 -1.395 15.358 hybrid contribution 0.456 1.382 -0.205 1.470 sum 2.858 -13.723 -1.600 14.108 Atomic orbital electron populations 1.69771 1.07752 1.29658 1.33819 1.25974 0.94760 1.01581 0.91875 0.86254 0.80646 0.80184 0.79376 1.19323 1.19943 1.18292 1.19589 0.97887 0.90766 1.40441 0.89990 1.17754 0.90726 0.92013 0.87588 1.22259 1.00286 0.98145 1.02442 1.21941 0.98095 0.88429 0.97927 1.67269 1.14535 1.29308 1.16853 1.18983 0.92665 0.90337 0.95741 1.18385 0.94319 0.91778 0.98819 1.21153 0.95227 0.97234 0.95714 1.20337 1.01512 0.90439 1.07154 1.16960 0.90262 0.87314 0.94815 1.42237 1.28967 1.05509 1.64987 1.17975 0.93938 0.84139 1.07404 1.86193 1.32835 1.33997 1.70926 1.19308 0.78889 0.74108 0.76349 1.93325 1.70998 1.71793 1.78352 1.93264 1.81972 1.42212 1.94776 1.93323 1.93054 1.84434 1.43617 1.21507 1.01521 0.90043 1.00228 1.21829 1.04502 0.92810 1.08425 0.90525 0.85581 0.86035 0.84657 0.84996 0.77356 0.77190 0.83646 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.45 10.92 55.55 0.61 -18.84 16 2 C 0.08 1.87 5.20 -17.34 -0.09 1.78 16 3 Si 0.91 17.74 29.59 -169.99 -5.03 12.71 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.46 -11.55 9.12 -37.65 -0.34 -11.90 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.13 3.29 5.60 -106.56 -0.60 2.69 16 10 C -0.21 -5.31 8.79 -38.66 -0.34 -5.65 16 11 C 0.09 2.11 11.15 -17.70 -0.20 1.91 16 12 N -0.56 -13.63 9.40 -9.95 -0.09 -13.72 16 13 C 0.16 3.63 6.72 -83.04 -0.56 3.07 16 14 C -0.03 -0.59 5.87 -104.88 -0.62 -1.21 16 15 C -0.07 -1.20 9.40 -39.26 -0.37 -1.57 16 16 C -0.17 -2.30 9.87 -39.46 -0.39 -2.69 16 17 C 0.21 2.87 6.77 -83.57 -0.57 2.30 16 18 N -0.88 -8.60 9.08 32.52 0.30 -8.31 16 19 C 0.01 0.17 6.50 -39.14 -0.25 -0.08 16 20 O -0.32 -4.55 9.61 -19.78 -0.19 -4.74 16 21 C 0.60 8.51 3.42 101.05 0.35 8.86 16 22 F -0.16 -2.49 15.56 2.25 0.04 -2.45 16 23 F -0.14 -1.73 17.53 2.25 0.04 -1.69 16 24 F -0.16 -2.46 15.56 2.25 0.04 -2.43 16 25 C -0.11 -2.09 7.77 -39.13 -0.30 -2.39 16 26 C -0.25 -6.03 9.24 -38.34 -0.35 -6.38 16 27 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 28 H 0.13 3.25 6.20 -52.48 -0.33 2.92 16 29 H 0.12 2.56 8.06 -52.48 -0.42 2.13 16 30 H 0.14 2.07 6.19 -52.48 -0.32 1.74 16 31 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.40 2.84 8.84 -40.82 -0.36 2.48 16 33 H 0.40 3.64 8.18 -40.82 -0.33 3.31 16 34 H 0.15 2.83 4.56 -52.48 -0.24 2.59 16 35 H 0.11 2.26 6.20 -52.49 -0.33 1.93 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -28.08 316.48 -6.47 -34.55 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -2.30 Total: 11.42 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -4.63 Total: -11.26 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.81 Total: -40.87 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.19 Total: -4.74 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.11 Total: -6.57 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.08 -6.47 -34.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244261779.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.977 kcal (2) G-P(sol) polarization free energy of solvation -28.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds