Wall clock time and date at job start Tue Mar 31 2020 14:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86792 * 120.00279 * 2 1 4 4 H 1.48497 * 109.47477 * 270.00356 * 3 2 1 5 5 H 1.48499 * 109.47347 * 30.00465 * 3 2 1 6 6 H 1.48505 * 109.46930 * 150.00199 * 3 2 1 7 7 C 1.40050 * 119.99316 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99336 * 163.15957 * 7 2 1 9 9 C 1.41521 * 120.00368 * 343.16511 * 7 2 1 10 10 C 1.41168 * 120.98455 * 336.09430 * 9 7 2 11 11 C 1.37707 * 119.08807 * 180.02562 * 10 9 7 12 12 N 1.31940 * 121.16239 * 359.73225 * 11 10 9 13 13 C 1.32828 * 122.19894 * 0.56046 * 12 11 10 14 14 C 1.48266 * 119.61643 * 179.70804 * 13 12 11 15 15 C 1.39410 * 120.02910 * 184.73244 * 14 13 12 16 16 C 1.37933 * 120.03953 * 180.02562 * 15 14 13 17 17 C 1.38867 * 120.10407 * 0.02562 * 16 15 14 18 18 N 1.39748 * 119.96491 * 179.97438 * 17 16 15 19 19 C 1.39448 * 120.06745 * 0.02562 * 17 16 15 20 20 O 1.36013 * 120.02594 * 179.97438 * 19 17 16 21 21 C 1.42889 * 117.00462 * 179.97438 * 20 19 17 22 22 F 1.39903 * 109.47303 * 59.99838 * 21 20 19 23 23 F 1.39903 * 109.47399 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47382 * 299.99889 * 21 20 19 25 25 C 1.38227 * 119.95850 * 359.97145 * 19 17 16 26 26 C 1.38961 * 120.75820 * 359.43927 * 13 12 11 27 27 H 0.97005 * 119.99538 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.45488 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.41667 * 179.97438 * 11 10 9 30 30 H 1.08007 * 119.98374 * 0.02562 * 15 14 13 31 31 H 1.08007 * 119.94545 * 179.74070 * 16 15 14 32 32 H 0.96996 * 120.00409 * 0.02562 * 18 17 16 33 33 H 0.97003 * 119.99409 * 179.97438 * 18 17 16 34 34 H 1.08005 * 120.05481 * 180.02562 * 25 19 17 35 35 H 1.08000 * 120.62012 * 180.25085 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4391 2.6526 0.7001 6 1 3.5391 1.4399 0.7000 7 6 2.0075 -1.2129 -0.0005 8 1 3.0528 -1.2329 -0.2715 9 6 1.3454 -2.4124 0.3539 10 6 0.1907 -2.3925 1.1658 11 6 -0.4223 -3.5830 1.4872 12 7 0.0479 -4.7341 1.0457 13 6 1.1334 -4.8098 0.2839 14 6 1.6154 -6.1347 -0.1751 15 6 2.8073 -6.2336 -0.8914 16 6 3.2557 -7.4659 -1.3190 17 6 2.5212 -8.6104 -1.0376 18 7 2.9779 -9.8574 -1.4727 19 6 1.3278 -8.5164 -0.3223 20 8 0.6088 -9.6378 -0.0477 21 6 -0.6033 -9.4670 0.6895 22 9 -1.4690 -8.6308 -0.0236 23 9 -1.2116 -10.7122 0.8818 24 9 -0.3164 -8.8909 1.9317 25 6 0.8760 -7.2828 0.1075 26 6 1.8191 -3.6612 -0.0924 27 1 -0.4850 0.8401 0.0004 28 1 -0.2064 -1.4565 1.5299 29 1 -1.3058 -3.5740 2.1084 30 1 3.3800 -5.3448 -1.1118 31 1 4.1771 -7.5404 -1.8775 32 1 3.8077 -9.9234 -1.9706 33 1 2.4654 -10.6572 -1.2760 34 1 -0.0478 -7.2082 0.6620 35 1 2.6991 -3.7251 -0.7152 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244261779.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:48 Heat of formation + Delta-G solvation = -163.387069 kcal Electronic energy + Delta-G solvation = -26626.158070 eV Core-core repulsion = 22172.745904 eV Total energy + Delta-G solvation = -4453.412166 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -51.43827 -49.16982 -49.03220 -41.39607 -40.15321 -38.57118 -36.20632 -35.46606 -32.70452 -31.96048 -31.36155 -28.77630 -27.90251 -26.90685 -24.32474 -24.14286 -22.82560 -22.31233 -20.57241 -20.13878 -20.03437 -19.15529 -18.08161 -18.04768 -17.31564 -16.97248 -16.34062 -16.27852 -16.10752 -15.91527 -15.65317 -15.54740 -15.44896 -15.44113 -15.25876 -15.17579 -14.78848 -14.46236 -14.40924 -14.30487 -13.95381 -13.44256 -13.21064 -12.99032 -12.85147 -12.60616 -12.34815 -11.96916 -11.76840 -11.66668 -11.21657 -9.99512 -9.87600 -9.77475 -9.59586 -8.71118 -8.15548 -6.55935 0.02868 0.27978 0.46043 0.93389 1.22214 1.40435 1.53347 1.60228 1.86356 2.19036 2.61010 2.78371 2.88237 2.89225 3.02818 3.59519 3.76291 3.79791 3.87252 4.23654 4.37790 4.46501 4.69388 4.85894 4.89285 4.96737 5.00210 5.18686 5.23826 5.34812 5.47623 5.53952 5.75178 5.79600 5.92434 6.20264 6.47528 6.52404 6.80504 6.81684 6.98810 7.69763 8.25063 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020377 B = 0.003267 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.762321 B = 8567.801244 C = 9696.517109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.486 4.486 8 H 0.087 0.913 9 C 0.100 3.900 10 C -0.236 4.236 11 C 0.084 3.916 12 N -0.580 5.580 13 C 0.157 3.843 14 C -0.075 4.075 15 C -0.069 4.069 16 C -0.161 4.161 17 C 0.230 3.770 18 N -0.854 5.854 19 C -0.002 4.002 20 O -0.309 6.309 21 C 0.607 3.393 22 F -0.172 7.172 23 F -0.128 7.128 24 F -0.170 7.170 25 C -0.121 4.121 26 C -0.272 4.272 27 H 0.292 0.708 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.176 0.824 32 H 0.416 0.584 33 H 0.407 0.593 34 H 0.127 0.873 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.130 -15.699 -2.881 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.179 4.179 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.516 4.516 8 H 0.105 0.895 9 C 0.092 3.908 10 C -0.258 4.258 11 C -0.068 4.068 12 N -0.296 5.296 13 C 0.024 3.976 14 C -0.078 4.078 15 C -0.088 4.088 16 C -0.183 4.183 17 C 0.123 3.877 18 N -0.395 5.395 19 C -0.048 4.048 20 O -0.230 6.230 21 C 0.516 3.484 22 F -0.154 7.154 23 F -0.109 7.109 24 F -0.152 7.152 25 C -0.141 4.141 26 C -0.294 4.294 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.193 0.807 32 H 0.248 0.752 33 H 0.237 0.763 34 H 0.145 0.855 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.455 -16.503 -2.673 17.302 hybrid contribution -0.160 1.543 0.125 1.556 sum 4.295 -14.960 -2.547 15.772 Atomic orbital electron populations 1.69828 1.09304 1.31116 1.33837 1.26886 0.95485 1.04846 0.90718 0.85111 0.79101 0.75303 0.79688 1.18424 1.19104 1.17962 1.19908 0.98357 0.91677 1.41681 0.89484 1.18167 0.91261 0.93300 0.88022 1.22219 1.01351 0.98158 1.04095 1.22287 0.98542 0.88196 0.97783 1.67395 1.15409 1.29072 1.17701 1.19572 0.91679 0.92174 0.94197 1.18342 0.96739 0.90332 1.02388 1.21284 0.93927 0.98909 0.94717 1.20703 1.02503 0.88866 1.06236 1.17115 0.88956 0.88862 0.92783 1.42255 1.29410 1.04305 1.63559 1.18027 0.95000 0.83558 1.08229 1.86187 1.32712 1.33215 1.70869 1.19277 0.78826 0.74330 0.75985 1.93308 1.71271 1.72259 1.78533 1.93293 1.81713 1.41205 1.94675 1.93308 1.93113 1.84705 1.44106 1.21351 1.01050 0.91023 1.00699 1.22037 1.05552 0.92512 1.09336 0.89688 0.86724 0.83961 0.84050 0.80702 0.75202 0.76343 0.85524 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.41 10.92 21.84 0.24 -41.18 16 2 C 0.04 1.83 5.20 85.29 0.44 2.28 16 3 Si 0.99 36.27 29.59 68.60 2.03 38.30 16 4 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 5 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 6 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 7 C -0.49 -25.29 9.12 23.52 0.21 -25.07 16 8 H 0.09 4.26 7.90 -2.91 -0.02 4.24 16 9 C 0.10 5.41 5.60 -21.12 -0.12 5.29 16 10 C -0.24 -12.59 8.79 22.86 0.20 -12.39 16 11 C 0.08 4.19 11.15 84.55 0.94 5.13 16 12 N -0.58 -29.11 9.40 -185.40 -1.74 -30.85 16 13 C 0.16 7.52 6.72 41.84 0.28 7.80 16 14 C -0.07 -2.95 5.87 -20.03 -0.12 -3.07 16 15 C -0.07 -2.13 9.40 22.48 0.21 -1.92 16 16 C -0.16 -3.69 9.87 22.35 0.22 -3.47 16 17 C 0.23 5.47 6.77 38.32 0.26 5.73 16 18 N -0.85 -12.89 9.08 -51.02 -0.46 -13.35 16 19 C 0.00 -0.06 6.50 22.56 0.15 0.08 16 20 O -0.31 -8.30 9.61 -93.70 -0.90 -9.20 16 21 C 0.61 16.71 3.42 113.37 0.39 17.10 16 22 F -0.17 -5.28 15.56 44.97 0.70 -4.58 16 23 F -0.13 -2.98 17.53 44.97 0.79 -2.19 16 24 F -0.17 -5.19 15.56 44.97 0.70 -4.49 16 25 C -0.12 -4.48 7.77 22.56 0.18 -4.31 16 26 C -0.27 -13.39 9.24 23.08 0.21 -13.18 16 27 H 0.29 13.31 8.29 -92.70 -0.77 12.54 16 28 H 0.11 6.25 6.20 -2.91 -0.02 6.23 16 29 H 0.14 6.23 8.06 -2.91 -0.02 6.21 16 30 H 0.14 4.11 6.19 -2.91 -0.02 4.09 16 31 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.42 3.71 8.84 -92.71 -0.82 2.89 16 33 H 0.41 5.67 8.18 -92.71 -0.76 4.92 16 34 H 0.13 5.09 4.56 -2.91 -0.01 5.07 16 35 H 0.12 5.37 6.20 -2.91 -0.02 5.35 16 Total: -1.00 -63.50 316.48 4.45 -59.05 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.36 Total: 28.48 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 3.46 Total: -19.99 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -1.97 Total: -85.38 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.90 Total: -9.20 kcal Atomic # 9 Polarization: -13.45 SS G_CDS: 2.19 Total: -11.26 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Total: -63.50 4.45 -59.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244261779.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.334 kcal (2) G-P(sol) polarization free energy of solvation -63.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds