Wall clock time and date at job start Tue Mar 31 2020 14:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 119.99900 * 2 1 4 4 H 1.48503 * 109.47037 * 270.00648 * 3 2 1 5 5 H 1.48508 * 109.47291 * 30.00025 * 3 2 1 6 6 H 1.48497 * 109.47527 * 150.00282 * 3 2 1 7 7 C 1.39928 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99718 * 163.63379 * 7 2 1 9 9 C 1.41433 * 120.00293 * 343.63022 * 7 2 1 10 10 C 1.40817 * 120.60721 * 155.74209 * 9 7 2 11 11 N 1.31491 * 120.67316 * 179.97438 * 10 9 7 12 12 C 1.31939 * 122.12464 * 359.97438 * 11 10 9 13 13 C 1.39700 * 121.14463 * 0.02562 * 12 11 10 14 14 C 1.48369 * 120.41203 * 180.27308 * 13 12 11 15 15 C 1.39362 * 120.02957 * 179.72108 * 14 13 12 16 16 C 1.37969 * 120.04080 * 180.02562 * 15 14 13 17 17 C 1.38835 * 120.10058 * 0.02562 * 16 15 14 18 18 N 1.39838 * 119.97081 * 179.97438 * 17 16 15 19 19 C 1.39418 * 120.06003 * 359.97167 * 17 16 15 20 20 O 1.36020 * 120.02038 * 180.02562 * 19 17 16 21 21 C 1.42897 * 117.00117 * 180.02562 * 20 19 17 22 22 F 1.39909 * 109.47262 * 59.99361 * 21 20 19 23 23 F 1.39895 * 109.47111 * 179.97438 * 21 20 19 24 24 F 1.39908 * 109.46929 * 299.99930 * 21 20 19 25 25 C 1.38265 * 119.96040 * 359.77351 * 19 17 16 26 26 C 1.39205 * 119.17545 * 359.97438 * 13 12 11 27 27 H 0.97003 * 120.00749 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.66272 * 359.97438 * 10 9 7 29 29 H 1.07996 * 119.43047 * 180.02562 * 12 11 10 30 30 H 1.08003 * 119.98195 * 359.97438 * 15 14 13 31 31 H 1.08001 * 119.94751 * 180.02562 * 16 15 14 32 32 H 0.97008 * 119.99622 * 359.97438 * 18 17 16 33 33 H 0.96994 * 120.00086 * 179.97438 * 18 17 16 34 34 H 1.07998 * 120.05359 * 180.27757 * 25 19 17 35 35 H 1.08005 * 120.95014 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4403 0.6999 7 6 2.0079 -1.2118 -0.0005 8 1 3.0552 -1.2306 -0.2641 9 6 1.3438 -2.4120 0.3441 10 6 1.8232 -3.6540 -0.1149 11 7 1.2070 -4.7706 0.2051 12 6 0.1258 -4.7835 0.9611 13 6 -0.4204 -3.5989 1.4612 14 6 -1.6334 -3.6328 2.3149 15 6 -2.1681 -2.4468 2.8143 16 6 -3.2958 -2.4781 3.6086 17 6 -3.8999 -3.6905 3.9125 18 7 -5.0425 -3.7192 4.7183 19 6 -3.3686 -4.8796 3.4151 20 8 -3.9614 -6.0671 3.7130 21 6 -3.3627 -7.2454 3.1698 22 9 -2.0469 -7.3556 3.6323 23 9 -4.0938 -8.3680 3.5727 24 9 -3.3609 -7.1661 1.7730 25 6 -2.2416 -4.8507 2.6146 26 6 0.1913 -2.3869 1.1538 27 1 -0.4851 0.8400 0.0004 28 1 2.7059 -3.6897 -0.7362 29 1 -0.3453 -5.7262 1.1975 30 1 -1.6990 -1.5025 2.5801 31 1 -3.7092 -1.5579 3.9944 32 1 -5.4124 -2.8920 5.0649 33 1 -5.4651 -4.5660 4.9306 34 1 -1.8313 -5.7706 2.2248 35 1 -0.2063 -1.4540 1.5254 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244265792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:57 Heat of formation + Delta-G solvation = -163.120295 kcal Electronic energy + Delta-G solvation = -26905.811780 eV Core-core repulsion = 22452.411182 eV Total energy + Delta-G solvation = -4453.400598 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.45914 -49.18472 -49.05353 -41.45004 -40.19188 -38.62677 -36.07244 -35.78027 -32.61321 -32.25894 -31.39714 -28.72818 -27.58309 -26.93328 -24.44681 -24.21705 -22.94631 -22.21354 -20.38197 -20.16295 -20.08449 -19.13802 -18.33095 -17.99387 -17.34315 -17.21618 -16.67066 -16.29857 -16.21085 -15.93771 -15.58586 -15.56417 -15.47686 -15.46811 -15.25105 -15.19158 -14.63228 -14.50954 -14.39376 -14.11422 -13.74829 -13.50736 -13.34279 -13.12007 -12.91643 -12.66463 -12.28953 -12.12657 -11.96189 -11.68774 -11.18523 -10.12886 -9.96410 -9.80360 -9.60953 -8.69391 -8.13584 -6.44737 -0.04198 0.23259 0.44257 0.93666 1.24701 1.42614 1.52123 1.58528 1.82394 2.21047 2.59937 2.75962 2.84205 2.86815 3.00395 3.62823 3.71246 3.75115 4.00400 4.17852 4.24581 4.38879 4.53474 4.73783 4.77594 4.86136 5.03081 5.13990 5.20471 5.30381 5.40928 5.54755 5.76804 5.86920 5.92335 6.05742 6.45373 6.50366 6.75832 6.78148 6.97064 7.68325 8.26272 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018035 B = 0.003743 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.206993 B = 7478.359726 C = 8786.084701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.040 3.960 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.262 1.262 6 H -0.259 1.259 7 C -0.479 4.479 8 H 0.085 0.915 9 C 0.040 3.960 10 C -0.043 4.043 11 N -0.480 5.480 12 C -0.043 4.043 13 C -0.078 4.078 14 C -0.066 4.066 15 C -0.078 4.078 16 C -0.158 4.158 17 C 0.224 3.776 18 N -0.855 5.855 19 C 0.010 3.990 20 O -0.309 6.309 21 C 0.606 3.394 22 F -0.169 7.169 23 F -0.127 7.127 24 F -0.170 7.170 25 C -0.140 4.140 26 C -0.140 4.140 27 H 0.294 0.706 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.127 0.873 31 H 0.168 0.832 32 H 0.415 0.585 33 H 0.408 0.592 34 H 0.130 0.870 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.037 -3.435 10.371 16.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.177 4.177 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.183 1.183 7 C -0.509 4.509 8 H 0.103 0.897 9 C 0.036 3.964 10 C -0.204 4.204 11 N -0.187 5.187 12 C -0.201 4.201 13 C -0.080 4.080 14 C -0.069 4.069 15 C -0.097 4.097 16 C -0.180 4.180 17 C 0.118 3.882 18 N -0.397 5.397 19 C -0.036 4.036 20 O -0.229 6.229 21 C 0.515 3.485 22 F -0.151 7.151 23 F -0.108 7.108 24 F -0.152 7.152 25 C -0.159 4.159 26 C -0.166 4.166 27 H 0.105 0.895 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.145 0.855 31 H 0.186 0.814 32 H 0.247 0.753 33 H 0.237 0.763 34 H 0.147 0.853 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.069 -4.150 10.142 16.302 hybrid contribution 0.154 0.832 -0.107 0.853 sum -11.916 -3.318 10.035 15.928 Atomic orbital electron populations 1.69814 1.08942 1.31193 1.33973 1.26781 0.95567 1.04487 0.90886 0.85141 0.79139 0.75575 0.79552 1.18810 1.18644 1.18278 1.19837 0.98165 0.91582 1.41269 0.89658 1.18804 0.92942 0.94354 0.90347 1.22722 1.03333 0.88304 1.06040 1.66907 1.08315 1.31814 1.11662 1.22082 0.96940 0.96507 1.04530 1.19624 0.95364 0.94606 0.98409 1.18408 0.95549 0.93109 0.99792 1.21225 0.95423 0.97575 0.95437 1.20658 0.97560 0.96475 1.03336 1.17043 0.89297 0.89471 0.92425 1.42252 1.28553 1.12876 1.56033 1.17918 0.97453 0.82325 1.05946 1.86211 1.53209 1.12364 1.71133 1.19290 0.74765 0.79509 0.74902 1.93311 1.37287 1.95903 1.88638 1.93299 1.77752 1.49041 1.90741 1.93312 1.95957 1.95965 1.29981 1.21294 0.95604 0.99305 0.99730 1.21867 0.98319 0.96573 0.99846 0.89488 0.84782 0.84760 0.85504 0.81436 0.75343 0.76270 0.85286 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.26 10.90 21.82 0.24 -39.02 16 2 C 0.04 1.85 5.20 85.25 0.44 2.30 16 3 Si 0.99 35.36 29.59 68.60 2.03 37.39 16 4 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 5 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 6 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 7 C -0.48 -24.65 9.09 23.47 0.21 -24.43 16 8 H 0.09 4.18 7.90 -2.91 -0.02 4.16 16 9 C 0.04 2.13 5.59 -21.22 -0.12 2.01 16 10 C -0.04 -2.27 10.96 85.37 0.94 -1.33 16 11 N -0.48 -24.79 10.32 -192.75 -1.99 -26.78 16 12 C -0.04 -2.08 10.60 85.03 0.90 -1.18 16 13 C -0.08 -3.69 5.89 -19.99 -0.12 -3.81 16 14 C -0.07 -2.58 5.88 -20.03 -0.12 -2.70 16 15 C -0.08 -2.65 9.42 22.48 0.21 -2.43 16 16 C -0.16 -4.02 9.87 22.35 0.22 -3.80 16 17 C 0.22 5.51 6.77 38.29 0.26 5.77 16 18 N -0.86 -13.66 9.08 -51.00 -0.46 -14.13 16 19 C 0.01 0.28 6.50 22.56 0.15 0.43 16 20 O -0.31 -7.89 9.61 -93.77 -0.90 -8.80 16 21 C 0.61 15.40 3.42 113.37 0.39 15.79 16 22 F -0.17 -4.66 15.58 44.97 0.70 -3.96 16 23 F -0.13 -2.77 17.53 44.97 0.79 -1.98 16 24 F -0.17 -4.74 15.55 44.97 0.70 -4.04 16 25 C -0.14 -4.89 7.64 22.55 0.17 -4.71 16 26 C -0.14 -7.18 8.16 23.15 0.19 -6.99 16 27 H 0.29 12.61 8.30 -92.71 -0.77 11.84 16 28 H 0.13 6.52 8.06 -2.91 -0.02 6.49 16 29 H 0.14 5.86 6.19 -2.91 -0.02 5.84 16 30 H 0.13 4.54 6.25 -2.91 -0.02 4.52 16 31 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 32 H 0.42 4.27 8.84 -92.70 -0.82 3.45 16 33 H 0.41 5.84 8.18 -92.71 -0.76 5.08 16 34 H 0.13 4.54 3.24 -2.91 -0.01 4.53 16 35 H 0.13 6.65 4.44 -2.91 -0.01 6.64 16 Total: -1.00 -60.48 313.90 4.47 -56.01 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -0.35 Total: 30.40 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 3.73 Total: -25.09 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -2.21 Total: -79.93 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.90 Total: -8.80 kcal Atomic # 9 Polarization: -12.17 SS G_CDS: 2.19 Total: -9.98 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Total: -60.48 4.47 -56.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244265792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.114 kcal (2) G-P(sol) polarization free energy of solvation -60.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds