Wall clock time and date at job start Tue Mar 31 2020 14:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86803 * 120.00225 * 2 1 4 4 H 1.48504 * 109.46935 * 269.99633 * 3 2 1 5 5 H 1.48503 * 109.47164 * 29.99327 * 3 2 1 6 6 H 1.48497 * 109.47402 * 149.99499 * 3 2 1 7 7 C 1.40036 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00282 * 180.02562 * 7 2 1 9 9 C 1.41433 * 119.99358 * 0.02562 * 7 2 1 10 10 C 1.40444 * 119.77051 * 179.97438 * 9 7 2 11 11 C 1.39379 * 118.82602 * 180.02562 * 10 9 7 12 12 C 1.48304 * 120.82360 * 180.02562 * 11 10 9 13 13 C 1.39402 * 120.03102 * 359.97438 * 12 11 10 14 14 C 1.37938 * 120.03836 * 179.97438 * 13 12 11 15 15 C 1.38863 * 120.10362 * 0.30183 * 14 13 12 16 16 N 1.39758 * 119.96891 * 179.69783 * 15 14 13 17 17 C 1.39453 * 120.06329 * 359.44356 * 15 14 13 18 18 O 1.36008 * 120.02346 * 180.29682 * 17 15 14 19 19 C 1.42901 * 117.00049 * 180.23208 * 18 17 15 20 20 F 1.39898 * 109.47066 * 60.00269 * 19 18 17 21 21 F 1.39899 * 109.46951 * 180.02562 * 19 18 17 22 22 F 1.39899 * 109.47349 * 300.00009 * 19 18 17 23 23 C 1.38233 * 119.95595 * 0.53228 * 17 15 14 24 24 C 1.40080 * 118.35004 * 0.27058 * 11 10 9 25 25 C 1.38469 * 119.41839 * 359.44193 * 24 11 10 26 26 N 1.31496 * 121.15018 * 0.57288 * 25 24 11 27 27 H 0.97006 * 119.99917 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.59248 * 0.02767 * 10 9 7 29 29 H 1.07997 * 119.98283 * 0.02562 * 13 12 11 30 30 H 1.08002 * 119.94504 * 180.02562 * 14 13 12 31 31 H 0.96993 * 119.99768 * 0.02562 * 16 15 14 32 32 H 0.96998 * 119.99959 * 179.97438 * 16 15 14 33 33 H 1.08002 * 120.04897 * 179.72203 * 23 17 15 34 34 H 1.07995 * 120.28864 * 179.69886 * 24 11 10 35 35 H 1.07992 * 119.42255 * 180.29872 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4388 2.6528 0.6999 6 1 3.5389 1.4402 0.7001 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3003 -2.4375 0.0005 10 6 2.0073 -3.6510 0.0005 11 6 1.2905 -4.8464 0.0000 12 6 1.9919 -6.1530 0.0005 13 6 3.3853 -6.1969 0.0011 14 6 4.0378 -7.4122 0.0021 15 6 3.3089 -8.5941 -0.0037 16 7 3.9730 -9.8238 -0.0090 17 6 1.9150 -8.5553 0.0011 18 8 1.2019 -9.7134 0.0015 19 6 -0.2225 -9.5983 0.0014 20 9 -0.6341 -8.9039 -1.1411 21 9 -0.7935 -10.8755 0.0025 22 9 -0.6343 -8.9030 1.1434 23 6 1.2583 -7.3388 0.0006 24 6 -0.1088 -4.7829 -0.0064 25 6 -0.7336 -3.5471 -0.0001 26 7 -0.0363 -2.4323 0.0004 27 1 -0.4850 0.8401 -0.0004 28 1 3.0872 -3.6580 0.0010 29 1 3.9542 -5.2789 0.0015 30 1 5.1174 -7.4444 0.0029 31 1 4.9426 -9.8514 -0.0083 32 1 3.4643 -10.6497 -0.0127 33 1 0.1788 -7.3070 -0.0002 34 1 -0.6952 -5.6897 -0.0119 35 1 -1.8124 -3.4981 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244266363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:06 Heat of formation + Delta-G solvation = -135.214637 kcal Electronic energy + Delta-G solvation = -26630.873384 eV Core-core repulsion = 22178.682866 eV Total energy + Delta-G solvation = -4452.190517 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.43277 -48.19435 -47.99313 -40.28705 -38.39188 -37.37995 -34.86429 -33.50387 -31.11884 -30.57968 -29.78142 -27.58840 -26.12197 -25.53898 -22.94862 -22.92403 -21.17804 -20.76380 -19.32376 -19.12489 -18.98368 -17.42697 -17.09581 -16.98777 -15.77895 -15.50625 -15.24064 -14.98682 -14.78287 -14.51894 -14.51656 -14.43067 -14.39549 -14.14302 -14.04777 -13.82658 -13.46675 -13.07847 -12.81918 -12.63858 -12.39359 -12.15088 -11.57345 -11.46817 -11.27255 -10.96195 -10.74336 -10.67597 -10.35043 -9.84133 -9.37907 -8.69377 -8.43131 -7.67545 -7.58705 -7.00072 -6.41426 -4.54571 1.34572 1.39530 1.48939 2.74892 2.86764 2.99580 3.08399 3.11004 3.18439 3.74169 3.80798 3.92670 3.93518 4.14533 4.77375 4.80570 4.92947 5.25816 5.37697 5.52356 5.78717 5.90952 6.01677 6.09093 6.32782 6.41324 6.42929 6.61786 6.71610 6.89967 6.96366 7.13365 7.30590 7.39197 7.51907 7.66414 7.69557 7.98320 8.20525 8.63855 8.89351 10.09978 10.30684 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.003254 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.790752 B = 8602.160624 C = 9797.451853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.432 4.432 8 H 0.084 0.916 9 C 0.255 3.745 10 C -0.254 4.254 11 C 0.004 3.996 12 C -0.035 4.035 13 C -0.076 4.076 14 C -0.168 4.168 15 C 0.208 3.792 16 N -0.876 5.876 17 C 0.017 3.983 18 O -0.317 6.317 19 C 0.604 3.396 20 F -0.164 7.164 21 F -0.139 7.139 22 F -0.164 7.164 23 C -0.134 4.134 24 C -0.305 4.305 25 C 0.126 3.874 26 N -0.483 5.483 27 H 0.273 0.727 28 H 0.103 0.897 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.399 0.601 32 H 0.400 0.600 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 -16.585 -0.005 17.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.156 4.156 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.463 4.463 8 H 0.102 0.898 9 C 0.130 3.870 10 C -0.277 4.277 11 C -0.002 4.002 12 C -0.037 4.037 13 C -0.095 4.095 14 C -0.190 4.190 15 C 0.104 3.896 16 N -0.417 5.417 17 C -0.028 4.028 18 O -0.238 6.238 19 C 0.513 3.487 20 F -0.146 7.146 21 F -0.120 7.120 22 F -0.146 7.146 23 C -0.153 4.153 24 C -0.328 4.328 25 C -0.039 4.039 26 N -0.196 5.196 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.227 0.773 32 H 0.228 0.772 33 H 0.155 0.845 34 H 0.111 0.889 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.795 -15.740 -0.001 16.191 hybrid contribution 0.503 -0.508 -0.010 0.715 sum 4.298 -16.249 -0.011 16.807 Atomic orbital electron populations 1.70134 1.07193 1.27779 1.28532 1.26065 0.94896 1.01062 0.93604 0.86341 0.80461 0.80873 0.79227 1.19406 1.20124 1.18535 1.19619 0.94232 0.89371 1.43124 0.89811 1.18546 0.88347 0.91686 0.88375 1.21831 0.98516 0.92492 1.14842 1.18476 0.93069 0.90294 0.98375 1.18630 0.92479 0.92249 1.00307 1.21188 0.93745 0.97580 0.96971 1.20396 0.99313 0.90050 1.09261 1.16949 0.86728 0.87523 0.98370 1.42236 1.08817 1.04701 1.85926 1.17913 0.89068 0.82973 1.12872 1.86214 1.14559 1.32612 1.90399 1.19319 0.80153 0.74242 0.74973 1.93318 1.90586 1.79294 1.51392 1.93274 1.83220 1.39130 1.96390 1.93318 1.90579 1.79259 1.51436 1.21430 1.00700 0.90623 1.02572 1.21305 0.93447 0.97893 1.20162 1.22438 0.98817 0.88595 0.94052 1.68729 1.07272 1.26774 1.16791 0.91596 0.87863 0.84659 0.84973 0.77295 0.77165 0.84544 0.88854 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.96 11.46 55.55 0.64 -18.32 16 2 C 0.07 1.74 5.50 -17.34 -0.10 1.65 16 3 Si 0.91 18.34 29.56 -169.99 -5.02 13.31 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.43 -11.38 9.14 -37.69 -0.34 -11.72 16 8 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 9 C 0.26 6.88 6.55 -85.03 -0.56 6.33 16 10 C -0.25 -6.06 9.22 -38.33 -0.35 -6.41 16 11 C 0.00 0.09 5.91 -104.64 -0.62 -0.53 16 12 C -0.03 -0.64 5.88 -104.88 -0.62 -1.26 16 13 C -0.08 -1.20 9.44 -39.26 -0.37 -1.57 16 14 C -0.17 -2.17 9.87 -39.46 -0.39 -2.56 16 15 C 0.21 2.72 6.77 -83.56 -0.57 2.15 16 16 N -0.88 -8.20 9.08 32.52 0.30 -7.90 16 17 C 0.02 0.26 6.50 -39.13 -0.25 0.00 16 18 O -0.32 -4.24 9.61 -19.77 -0.19 -4.43 16 19 C 0.60 7.80 3.42 101.05 0.35 8.15 16 20 F -0.16 -2.26 15.56 2.25 0.04 -2.22 16 21 F -0.14 -1.58 17.53 2.25 0.04 -1.54 16 22 F -0.16 -2.26 15.56 2.25 0.04 -2.22 16 23 C -0.13 -2.28 7.65 -39.14 -0.30 -2.58 16 24 C -0.30 -6.87 9.51 -38.81 -0.37 -7.23 16 25 C 0.13 3.06 11.17 -17.61 -0.20 2.87 16 26 N -0.48 -13.28 7.85 -11.22 -0.09 -13.37 16 27 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 28 H 0.10 2.21 6.32 -52.49 -0.33 1.88 16 29 H 0.14 2.04 6.27 -52.49 -0.33 1.71 16 30 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.40 2.70 8.84 -40.82 -0.36 2.34 16 32 H 0.40 3.45 8.18 -40.82 -0.33 3.12 16 33 H 0.14 2.33 3.30 -52.49 -0.17 2.16 16 34 H 0.09 1.88 6.31 -52.49 -0.33 1.55 16 35 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -29.44 315.54 -6.44 -35.88 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -2.25 Total: 8.79 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -4.68 Total: -12.73 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.84 Total: -39.60 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.19 Total: -4.43 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.11 Total: -5.99 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.44 -6.44 -35.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244266363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.334 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds