Wall clock time and date at job start Tue Mar 31 2020 14:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86803 * 120.00225 * 2 1 4 4 H 1.48504 * 109.46935 * 269.99633 * 3 2 1 5 5 H 1.48503 * 109.47164 * 29.99327 * 3 2 1 6 6 H 1.48497 * 109.47402 * 149.99499 * 3 2 1 7 7 C 1.40036 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00282 * 180.02562 * 7 2 1 9 9 C 1.41433 * 119.99358 * 0.02562 * 7 2 1 10 10 C 1.40444 * 119.77051 * 179.97438 * 9 7 2 11 11 C 1.39379 * 118.82602 * 180.02562 * 10 9 7 12 12 C 1.48304 * 120.82360 * 180.02562 * 11 10 9 13 13 C 1.39402 * 120.03102 * 359.97438 * 12 11 10 14 14 C 1.37938 * 120.03836 * 179.97438 * 13 12 11 15 15 C 1.38863 * 120.10362 * 0.30183 * 14 13 12 16 16 N 1.39758 * 119.96891 * 179.69783 * 15 14 13 17 17 C 1.39453 * 120.06329 * 359.44356 * 15 14 13 18 18 O 1.36008 * 120.02346 * 180.29682 * 17 15 14 19 19 C 1.42901 * 117.00049 * 180.23208 * 18 17 15 20 20 F 1.39898 * 109.47066 * 60.00269 * 19 18 17 21 21 F 1.39899 * 109.46951 * 180.02562 * 19 18 17 22 22 F 1.39899 * 109.47349 * 300.00009 * 19 18 17 23 23 C 1.38233 * 119.95595 * 0.53228 * 17 15 14 24 24 C 1.40080 * 118.35004 * 0.27058 * 11 10 9 25 25 C 1.38469 * 119.41839 * 359.44193 * 24 11 10 26 26 N 1.31496 * 121.15018 * 0.57288 * 25 24 11 27 27 H 0.97006 * 119.99917 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.59248 * 0.02767 * 10 9 7 29 29 H 1.07997 * 119.98283 * 0.02562 * 13 12 11 30 30 H 1.08002 * 119.94504 * 180.02562 * 14 13 12 31 31 H 0.96993 * 119.99768 * 0.02562 * 16 15 14 32 32 H 0.96998 * 119.99959 * 179.97438 * 16 15 14 33 33 H 1.08002 * 120.04897 * 179.72203 * 23 17 15 34 34 H 1.07995 * 120.28864 * 179.69886 * 24 11 10 35 35 H 1.07992 * 119.42255 * 180.29872 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4388 2.6528 0.6999 6 1 3.5389 1.4402 0.7001 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3003 -2.4375 0.0005 10 6 2.0073 -3.6510 0.0005 11 6 1.2905 -4.8464 0.0000 12 6 1.9919 -6.1530 0.0005 13 6 3.3853 -6.1969 0.0011 14 6 4.0378 -7.4122 0.0021 15 6 3.3089 -8.5941 -0.0037 16 7 3.9730 -9.8238 -0.0090 17 6 1.9150 -8.5553 0.0011 18 8 1.2019 -9.7134 0.0015 19 6 -0.2225 -9.5983 0.0014 20 9 -0.6341 -8.9039 -1.1411 21 9 -0.7935 -10.8755 0.0025 22 9 -0.6343 -8.9030 1.1434 23 6 1.2583 -7.3388 0.0006 24 6 -0.1088 -4.7829 -0.0064 25 6 -0.7336 -3.5471 -0.0001 26 7 -0.0363 -2.4323 0.0004 27 1 -0.4850 0.8401 -0.0004 28 1 3.0872 -3.6580 0.0010 29 1 3.9542 -5.2789 0.0015 30 1 5.1174 -7.4444 0.0029 31 1 4.9426 -9.8514 -0.0083 32 1 3.4643 -10.6497 -0.0127 33 1 0.1788 -7.3070 -0.0002 34 1 -0.6952 -5.6897 -0.0119 35 1 -1.8124 -3.4981 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244266363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:05 Heat of formation + Delta-G solvation = -153.256428 kcal Electronic energy + Delta-G solvation = -26631.655734 eV Core-core repulsion = 22178.682866 eV Total energy + Delta-G solvation = -4452.972868 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.47368 -49.19751 -49.06940 -41.44183 -40.05229 -38.63444 -36.12408 -35.24922 -32.64067 -32.13235 -31.28940 -28.88346 -27.72421 -26.91720 -24.36735 -24.22351 -22.75420 -22.30170 -20.57628 -20.17682 -20.05886 -19.04095 -18.23518 -18.10562 -17.31380 -16.88449 -16.41360 -16.31093 -16.06500 -15.89691 -15.57728 -15.55094 -15.50057 -15.48256 -15.24637 -15.20484 -14.73340 -14.39437 -14.34288 -14.24704 -13.83962 -13.50438 -13.08544 -12.97421 -12.85949 -12.47866 -12.43638 -12.03081 -11.92493 -11.58143 -11.15551 -10.05725 -9.79688 -9.57977 -9.48837 -8.26946 -8.21207 -6.50144 0.01352 0.22861 0.43278 0.91675 1.40245 1.42892 1.56386 1.59218 1.81473 2.25015 2.68609 2.74731 2.86088 2.91096 3.02264 3.64765 3.69353 3.98909 4.00865 4.21285 4.25034 4.36927 4.55373 4.76075 4.80799 4.92141 4.95021 5.14889 5.23097 5.32160 5.51032 5.52285 5.64082 5.78177 5.96260 6.16636 6.30525 6.45242 6.76002 6.95753 6.97242 8.20924 8.48156 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.003254 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.790752 B = 8602.160624 C = 9797.451853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.023 3.977 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.468 4.468 8 H 0.093 0.907 9 C 0.223 3.777 10 C -0.272 4.272 11 C 0.010 3.990 12 C -0.077 4.077 13 C -0.074 4.074 14 C -0.159 4.159 15 C 0.227 3.773 16 N -0.855 5.855 17 C 0.005 3.995 18 O -0.309 6.309 19 C 0.606 3.394 20 F -0.170 7.170 21 F -0.127 7.127 22 F -0.170 7.170 23 C -0.136 4.136 24 C -0.306 4.306 25 C 0.106 3.894 26 N -0.523 5.523 27 H 0.278 0.722 28 H 0.120 0.880 29 H 0.138 0.862 30 H 0.172 0.828 31 H 0.416 0.584 32 H 0.408 0.592 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.744 -18.527 0.000 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.198 4.198 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.499 4.499 8 H 0.111 0.889 9 C 0.098 3.902 10 C -0.294 4.294 11 C 0.004 3.996 12 C -0.079 4.079 13 C -0.093 4.093 14 C -0.182 4.182 15 C 0.120 3.880 16 N -0.396 5.396 17 C -0.041 4.041 18 O -0.230 6.230 19 C 0.515 3.485 20 F -0.152 7.152 21 F -0.109 7.109 22 F -0.152 7.152 23 C -0.156 4.156 24 C -0.329 4.329 25 C -0.057 4.057 26 N -0.237 5.237 27 H 0.089 0.911 28 H 0.138 0.862 29 H 0.156 0.844 30 H 0.190 0.810 31 H 0.247 0.753 32 H 0.237 0.763 33 H 0.146 0.854 34 H 0.132 0.868 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.168 -17.756 0.005 18.797 hybrid contribution -0.193 -0.262 -0.014 0.326 sum 5.974 -18.018 -0.009 18.983 Atomic orbital electron populations 1.70249 1.09023 1.29037 1.29807 1.27028 0.95696 1.04665 0.92443 0.85126 0.79049 0.75588 0.79427 1.18755 1.19495 1.17587 1.20015 0.94895 0.90258 1.44778 0.88904 1.19025 0.88759 0.93288 0.89082 1.21986 0.99451 0.92263 1.15727 1.18852 0.93099 0.91849 0.95785 1.18481 0.93753 0.90808 1.04892 1.21296 0.92644 0.99084 0.96272 1.20717 1.01119 0.88630 1.07710 1.17114 0.86177 0.88934 0.95800 1.42266 1.09916 1.03676 1.83747 1.17969 0.89984 0.82608 1.13573 1.86211 1.14626 1.31802 1.90350 1.19285 0.80067 0.74497 0.74601 1.93308 1.90633 1.79554 1.51693 1.93300 1.82999 1.38266 1.96315 1.93308 1.90626 1.79520 1.51739 1.21342 1.00375 0.91129 1.02704 1.21572 0.94237 0.97977 1.19147 1.22818 0.99730 0.88915 0.94271 1.68670 1.08036 1.28332 1.18649 0.91143 0.86179 0.84437 0.81025 0.75256 0.76305 0.85400 0.86791 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.85 11.46 21.84 0.25 -41.60 16 2 C 0.02 1.18 5.50 85.29 0.47 1.65 16 3 Si 0.99 38.19 29.56 68.60 2.03 40.22 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 6 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 7 C -0.47 -25.53 9.14 23.49 0.21 -25.32 16 8 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 9 C 0.22 12.59 6.55 40.19 0.26 12.85 16 10 C -0.27 -13.37 9.22 23.08 0.21 -13.16 16 11 C 0.01 0.47 5.91 -19.88 -0.12 0.35 16 12 C -0.08 -2.82 5.88 -20.03 -0.12 -2.94 16 13 C -0.07 -2.20 9.44 22.48 0.21 -1.99 16 14 C -0.16 -3.51 9.87 22.35 0.22 -3.29 16 15 C 0.23 5.06 6.77 38.32 0.26 5.32 16 16 N -0.85 -12.02 9.08 -51.01 -0.46 -12.48 16 17 C 0.00 0.13 6.50 22.56 0.15 0.28 16 18 O -0.31 -7.53 9.61 -93.64 -0.90 -8.43 16 19 C 0.61 14.77 3.42 113.37 0.39 15.16 16 20 F -0.17 -4.52 15.56 44.97 0.70 -3.82 16 21 F -0.13 -2.68 17.53 44.97 0.79 -1.89 16 22 F -0.17 -4.53 15.56 44.97 0.70 -3.83 16 23 C -0.14 -4.50 7.65 22.56 0.17 -4.33 16 24 C -0.31 -14.15 9.51 22.77 0.22 -13.93 16 25 C 0.11 5.38 11.17 84.80 0.95 6.33 16 26 N -0.52 -30.20 7.85 -189.40 -1.49 -31.68 16 27 H 0.28 13.85 8.29 -92.70 -0.77 13.08 16 28 H 0.12 5.26 6.32 -2.91 -0.02 5.24 16 29 H 0.14 3.96 6.27 -2.91 -0.02 3.94 16 30 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.42 3.42 8.84 -92.71 -0.82 2.60 16 32 H 0.41 5.21 8.18 -92.71 -0.76 4.45 16 33 H 0.13 4.33 3.30 -2.91 -0.01 4.32 16 34 H 0.11 4.66 6.31 -2.91 -0.02 4.64 16 35 H 0.14 6.09 8.06 -2.91 -0.02 6.07 16 Total: -1.00 -66.92 315.54 4.74 -62.17 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -0.36 Total: 24.36 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 3.49 Total: -23.02 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.70 Total: -85.77 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.90 Total: -8.43 kcal Atomic # 9 Polarization: -11.73 SS G_CDS: 2.19 Total: -9.54 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -66.92 4.74 -62.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244266363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.084 kcal (2) G-P(sol) polarization free energy of solvation -66.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds