Wall clock time and date at job start Tue Mar 31 2020 14:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30713 * 1 3 3 Si 1.86799 * 120.00409 * 2 1 4 4 H 1.48504 * 109.46892 * 270.00229 * 3 2 1 5 5 H 1.48498 * 109.47191 * 30.00217 * 3 2 1 6 6 H 1.48494 * 109.47066 * 150.00598 * 3 2 1 7 7 C 1.40130 * 119.99473 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99795 * 164.75523 * 7 2 1 9 9 C 1.40828 * 120.00458 * 344.75717 * 7 2 1 10 10 C 1.41158 * 121.11409 * 334.71816 * 9 7 2 11 11 C 1.36403 * 119.12102 * 180.24903 * 10 9 7 12 12 N 1.32267 * 121.53784 * 359.74451 * 11 10 9 13 13 C 1.31614 * 122.51965 * 359.97438 * 12 11 10 14 14 C 1.39444 * 120.64153 * 0.02562 * 13 12 11 15 15 C 1.47658 * 120.79414 * 179.97438 * 14 13 12 16 16 C 1.39835 * 120.05716 * 130.23313 * 15 14 13 17 17 C 1.37753 * 120.01508 * 180.23282 * 16 15 14 18 18 C 1.39056 * 120.12657 * 359.78904 * 17 16 15 19 19 N 1.39487 * 119.94248 * 180.02562 * 18 17 16 20 20 C 1.39657 * 120.11360 * 359.97438 * 18 17 16 21 21 O 1.35994 * 120.00995 * 180.02562 * 20 18 17 22 22 C 1.42900 * 117.00221 * 179.97438 * 21 20 18 23 23 F 1.39894 * 109.46954 * 60.00134 * 22 21 20 24 24 F 1.39895 * 109.47156 * 180.02562 * 22 21 20 25 25 F 1.39899 * 109.47031 * 300.00247 * 22 21 20 26 26 C 1.38055 * 119.98462 * 0.02562 * 20 18 17 27 27 H 0.97005 * 119.99798 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.43933 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.23199 * 179.76318 * 11 10 9 30 30 H 1.07996 * 119.67901 * 179.97438 * 13 12 11 31 31 H 1.07999 * 119.99254 * 359.97438 * 16 15 14 32 32 H 1.08005 * 119.93839 * 179.76985 * 17 16 15 33 33 H 0.97003 * 120.00392 * 179.97438 * 19 18 17 34 34 H 0.97004 * 119.99975 * 359.97438 * 19 18 17 35 35 H 1.08005 * 120.06605 * 179.97438 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.4887 2.0463 -1.4001 5 1 1.4388 2.6526 0.7001 6 1 3.5388 1.4400 0.6999 7 6 2.0077 -1.2136 -0.0005 8 1 3.0592 -1.2300 -0.2465 9 6 1.3407 -2.4119 0.3196 10 6 0.1830 -2.4090 1.1273 11 6 -0.4278 -3.5940 1.4161 12 7 0.0366 -4.7426 0.9532 13 6 1.1070 -4.8174 0.1910 14 6 1.8077 -3.6656 -0.1651 15 6 3.0093 -3.7457 -1.0196 16 6 3.1284 -2.9175 -2.1400 17 6 4.2476 -2.9962 -2.9393 18 6 5.2628 -3.8955 -2.6320 19 7 6.3946 -3.9717 -3.4437 20 6 5.1516 -4.7217 -1.5116 21 8 6.1459 -5.6001 -1.2128 22 6 5.9658 -6.4136 -0.0519 23 9 4.8112 -7.1894 -0.2008 24 9 7.0743 -7.2521 0.1065 25 9 5.8357 -5.5954 1.0753 26 6 4.0320 -4.6467 -0.7074 27 1 -0.4850 0.8401 0.0004 28 1 -0.2118 -1.4813 1.5144 29 1 -1.3114 -3.5942 2.0371 30 1 1.4463 -5.7802 -0.1614 31 1 2.3409 -2.2188 -2.3810 32 1 4.3366 -2.3585 -3.8064 33 1 7.1035 -4.5984 -3.2300 34 1 6.4728 -3.3979 -4.2220 35 1 3.9444 -5.2853 0.1592 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244266391.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:14 Heat of formation + Delta-G solvation = -163.230796 kcal Electronic energy + Delta-G solvation = -27333.269025 eV Core-core repulsion = 22879.863635 eV Total energy + Delta-G solvation = -4453.405389 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.42244 -49.15146 -49.01394 -41.29689 -40.15597 -38.48204 -36.09259 -35.64069 -32.64820 -31.86565 -31.17744 -28.89035 -27.67176 -26.92148 -24.22844 -23.72818 -23.14921 -22.14338 -20.34426 -20.12373 -19.95643 -19.43844 -18.01554 -17.91326 -17.46002 -16.92418 -16.38874 -16.21341 -16.07612 -15.94432 -15.67138 -15.49646 -15.43675 -15.42129 -15.26480 -15.14222 -14.52151 -14.40954 -14.40420 -14.18579 -13.85557 -13.40043 -13.23472 -13.05520 -12.88869 -12.65422 -12.22792 -12.00325 -11.66191 -11.51407 -11.18870 -9.92328 -9.86100 -9.63820 -9.51780 -8.72906 -8.12396 -6.48402 0.30279 0.39725 0.51042 1.00214 1.10217 1.40802 1.51982 1.58236 1.87814 2.18398 2.77078 2.80242 2.82674 2.98535 3.05084 3.71132 3.83984 3.90575 4.04868 4.30114 4.45035 4.49591 4.53434 4.87112 4.97934 5.02952 5.08333 5.25317 5.32424 5.44513 5.51523 5.59912 5.82362 5.92699 6.04703 6.21935 6.53064 6.58965 6.80974 6.84546 7.05108 7.73628 8.23003 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.004849 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.429667 B = 5772.989827 C = 6977.029499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.043 3.957 3 Si 0.976 3.024 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.086 0.914 9 C 0.117 3.883 10 C -0.228 4.228 11 C 0.074 3.926 12 N -0.591 5.591 13 C 0.114 3.886 14 C -0.230 4.230 15 C -0.027 4.027 16 C -0.069 4.069 17 C -0.164 4.164 18 C 0.215 3.785 19 N -0.858 5.858 20 C 0.006 3.994 21 O -0.311 6.311 22 C 0.607 3.393 23 F -0.169 7.169 24 F -0.129 7.129 25 F -0.172 7.172 26 C -0.151 4.151 27 H 0.293 0.707 28 H 0.117 0.883 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.161 0.839 33 H 0.406 0.594 34 H 0.413 0.587 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.786 -3.707 -6.061 14.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.175 4.175 3 Si 0.797 3.203 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.104 0.896 9 C 0.109 3.891 10 C -0.251 4.251 11 C -0.074 4.074 12 N -0.306 5.306 13 C -0.043 4.043 14 C -0.235 4.235 15 C -0.030 4.030 16 C -0.088 4.088 17 C -0.187 4.187 18 C 0.109 3.891 19 N -0.400 5.400 20 C -0.040 4.040 21 O -0.231 6.231 22 C 0.516 3.484 23 F -0.151 7.151 24 F -0.110 7.110 25 F -0.154 7.154 26 C -0.170 4.170 27 H 0.105 0.895 28 H 0.135 0.865 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.137 0.863 32 H 0.178 0.822 33 H 0.235 0.765 34 H 0.244 0.756 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.223 -4.377 -5.870 14.248 hybrid contribution 0.428 1.147 0.289 1.258 sum 12.650 -3.230 -5.581 14.199 Atomic orbital electron populations 1.69795 1.09090 1.31196 1.32992 1.26787 0.95375 1.04408 0.90978 0.85268 0.79102 0.75967 0.79981 1.17942 1.19164 1.18534 1.19692 0.97544 0.90944 1.40277 0.89632 1.18123 0.90772 0.92494 0.87723 1.21911 1.00996 0.98267 1.03908 1.22021 0.98744 0.88545 0.98064 1.67348 1.16517 1.29244 1.17518 1.22447 0.91278 0.96714 0.93846 1.19746 1.01497 0.94404 1.07883 1.18177 0.93000 0.96568 0.95245 1.21183 0.97634 0.97000 0.92963 1.20626 0.93220 1.01637 1.03175 1.17004 0.90067 0.93355 0.88712 1.42112 1.19465 1.47340 1.31103 1.17903 0.89507 0.97076 0.99532 1.86185 1.44549 1.50351 1.42063 1.19266 0.74397 0.77007 0.77720 1.93294 1.50590 1.76070 1.95170 1.93289 1.52752 1.70112 1.94839 1.93303 1.95460 1.73072 1.53600 1.21323 0.93591 1.02104 0.99999 0.89545 0.86543 0.84333 0.84486 0.86323 0.82157 0.76477 0.75596 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.67 10.92 21.86 0.24 -38.43 16 2 C 0.04 1.98 5.22 85.32 0.45 2.42 16 3 Si 0.98 34.96 29.59 68.60 2.03 36.99 16 4 H -0.26 -8.63 7.11 99.48 0.71 -7.93 16 5 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.45 -22.37 7.29 23.36 0.17 -22.20 16 8 H 0.09 4.12 6.71 -2.91 -0.02 4.10 16 9 C 0.12 6.02 5.59 -20.92 -0.12 5.91 16 10 C -0.23 -11.77 8.72 22.56 0.20 -11.57 16 11 C 0.07 3.62 11.08 84.20 0.93 4.55 16 12 N -0.59 -29.16 10.32 -196.15 -2.02 -31.18 16 13 C 0.11 5.40 10.71 85.02 0.91 6.31 16 14 C -0.23 -11.02 5.53 -19.49 -0.11 -11.13 16 15 C -0.03 -1.11 5.00 -20.02 -0.10 -1.21 16 16 C -0.07 -2.55 8.06 22.54 0.18 -2.37 16 17 C -0.16 -4.70 9.87 22.35 0.22 -4.48 16 18 C 0.21 5.86 6.77 38.46 0.26 6.13 16 19 N -0.86 -15.91 9.07 -50.94 -0.46 -16.37 16 20 C 0.01 0.18 6.50 22.57 0.15 0.33 16 21 O -0.31 -8.63 9.60 -93.49 -0.90 -9.53 16 22 C 0.61 16.48 3.42 113.37 0.39 16.87 16 23 F -0.17 -4.86 15.56 44.97 0.70 -4.16 16 24 F -0.13 -3.00 17.53 44.97 0.79 -2.21 16 25 F -0.17 -5.18 15.56 44.97 0.70 -4.48 16 26 C -0.15 -5.58 7.74 22.61 0.18 -5.40 16 27 H 0.29 12.66 8.29 -92.70 -0.77 11.89 16 28 H 0.12 6.09 6.24 -2.91 -0.02 6.07 16 29 H 0.14 5.91 8.06 -2.91 -0.02 5.89 16 30 H 0.14 5.81 8.05 -2.91 -0.02 5.78 16 31 H 0.12 4.76 7.36 -2.91 -0.02 4.74 16 32 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.41 6.78 8.17 -92.71 -0.76 6.03 16 34 H 0.41 5.32 8.84 -92.71 -0.82 4.50 16 35 H 0.12 4.51 5.07 -2.91 -0.01 4.50 16 Total: -1.00 -57.84 315.83 4.41 -53.43 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.37 Total: 31.80 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 3.70 Total: -15.86 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -2.25 Total: -85.98 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.90 Total: -9.53 kcal Atomic # 9 Polarization: -13.03 SS G_CDS: 2.19 Total: -10.84 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 2.03 Total: 36.99 kcal Total: -57.84 4.41 -53.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244266391.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.797 kcal (2) G-P(sol) polarization free energy of solvation -57.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds