Wall clock time and date at job start Tue Mar 31 2020 14:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86797 * 119.99948 * 2 1 4 4 H 1.48505 * 109.46937 * 240.00009 * 3 2 1 5 5 H 1.48497 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47346 * 120.00225 * 3 2 1 7 7 C 1.40047 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00118 * 180.02562 * 7 2 1 9 9 C 1.40896 * 119.99952 * 359.97438 * 7 2 1 10 10 C 1.40928 * 119.67403 * 180.02562 * 9 7 2 11 11 C 1.36589 * 119.26926 * 180.02562 * 10 9 7 12 12 C 1.40377 * 118.60215 * 359.97438 * 11 10 9 13 13 C 1.47783 * 120.35337 * 179.97438 * 12 11 10 14 14 C 1.39778 * 120.05213 * 0.02562 * 13 12 11 15 15 C 1.37768 * 120.01948 * 179.97438 * 14 13 12 16 16 C 1.39042 * 120.12217 * 359.72389 * 15 14 13 17 17 N 1.39498 * 119.94776 * 180.27335 * 16 15 14 18 18 C 1.39654 * 120.10298 * 0.55697 * 16 15 14 19 19 O 1.35995 * 120.00895 * 179.71701 * 18 16 15 20 20 C 1.42900 * 116.99773 * 179.72225 * 19 18 16 21 21 F 1.39905 * 109.47006 * 60.00227 * 20 19 18 22 22 F 1.39900 * 109.47309 * 300.00528 * 20 19 18 23 23 F 1.39897 * 109.47274 * 180.02562 * 20 19 18 24 24 C 1.38069 * 119.97586 * 359.44418 * 18 16 15 25 25 C 1.40188 * 119.29622 * 0.25735 * 12 11 10 26 26 N 1.31166 * 120.67256 * 359.49344 * 25 12 11 27 27 H 0.96996 * 119.99709 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.36804 * 0.02562 * 10 9 7 29 29 H 1.07995 * 120.70065 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.99026 * 359.96041 * 14 13 12 31 31 H 1.08004 * 119.93651 * 180.02562 * 15 14 13 32 32 H 0.96998 * 119.99795 * 180.27542 * 17 16 15 33 33 H 0.96997 * 120.00364 * 0.27998 * 17 16 15 34 34 H 1.08001 * 120.05618 * 180.25572 * 24 18 16 35 35 H 1.07996 * 119.66649 * 179.72283 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6964 -1.2126 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6964 1.2124 7 6 2.0077 -1.2128 0.0005 8 1 3.0878 -1.2129 0.0010 9 6 1.3032 -2.4330 0.0016 10 6 2.0148 -3.6495 0.0027 11 6 1.3235 -4.8275 0.0032 12 6 -0.0796 -4.7833 0.0032 13 6 -0.8661 -6.0345 0.0032 14 6 -0.2144 -7.2710 0.0038 15 6 -0.9483 -8.4369 0.0043 16 6 -2.3378 -8.3868 0.0100 17 7 -3.0773 -9.5696 0.0163 18 6 -2.9942 -7.1542 0.0036 19 8 -4.3534 -7.1074 0.0034 20 6 -4.9579 -5.8126 0.0028 21 9 -4.5575 -5.1115 -1.1398 22 9 -4.5577 -5.1105 1.1448 23 9 -6.3503 -5.9480 0.0034 24 6 -2.2629 -5.9831 0.0031 25 6 -0.7267 -3.5398 -0.0028 26 7 -0.0349 -2.4254 0.0016 27 1 -0.4849 0.8400 -0.0004 28 1 3.0949 -3.6503 0.0031 29 1 1.8453 -5.7730 0.0045 30 1 0.8648 -7.3125 0.0035 31 1 -0.4433 -9.3917 0.0051 32 1 -4.0467 -9.5355 0.0163 33 1 -2.6222 -10.4262 0.0207 34 1 -2.7692 -5.0291 0.0023 35 1 -1.8059 -3.4989 -0.0074 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244267353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:01 Heat of formation + Delta-G solvation = -137.566718 kcal Electronic energy + Delta-G solvation = -26732.124413 eV Core-core repulsion = 22279.831902 eV Total energy + Delta-G solvation = -4452.292511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.28161 -48.05188 -47.83531 -40.06936 -38.40424 -37.24696 -34.72692 -33.55966 -30.97742 -30.66534 -29.87107 -27.94873 -25.96285 -25.14281 -23.05968 -22.38517 -21.35407 -20.68974 -19.09382 -18.97030 -18.80881 -17.67959 -16.93033 -16.87885 -15.80015 -15.63074 -15.07419 -14.88107 -14.66260 -14.48984 -14.36293 -14.27605 -14.26976 -14.06861 -13.98708 -13.82363 -13.20704 -12.89874 -12.69086 -12.56444 -12.22273 -12.10668 -11.96344 -11.33215 -11.14591 -10.88091 -10.80869 -10.54617 -10.45690 -10.08612 -9.45641 -8.50727 -8.40692 -7.98462 -7.68100 -6.80414 -6.57478 -4.61418 1.56663 1.59200 1.64833 2.74366 2.99637 3.01345 3.02248 3.03260 3.13355 3.80943 3.92634 3.99673 4.04953 4.25135 4.69782 4.99577 5.16418 5.43830 5.56749 5.72020 5.81966 5.95071 5.99656 6.10972 6.36802 6.50447 6.56706 6.68318 6.74471 6.93765 6.97036 7.11061 7.27337 7.51066 7.62799 7.72749 7.85151 7.89410 8.05306 8.46302 8.75487 9.96169 10.12205 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016489 B = 0.003600 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.644643 B = 7776.155118 C = 9299.298671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.063 3.937 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.407 4.407 8 H 0.088 0.912 9 C 0.251 3.749 10 C -0.271 4.271 11 C -0.036 4.036 12 C -0.273 4.273 13 C 0.020 3.980 14 C -0.113 4.113 15 C -0.155 4.155 16 C 0.179 3.821 17 N -0.880 5.880 18 C 0.033 3.967 19 O -0.319 6.319 20 C 0.604 3.396 21 F -0.164 7.164 22 F -0.164 7.164 23 F -0.141 7.141 24 C -0.170 4.170 25 C 0.157 3.843 26 N -0.487 5.487 27 H 0.278 0.722 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.398 0.602 33 H 0.396 0.604 34 H 0.132 0.868 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.566 -12.135 0.008 13.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.318 5.318 2 C -0.165 4.165 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.437 4.437 8 H 0.106 0.894 9 C 0.128 3.872 10 C -0.293 4.293 11 C -0.059 4.059 12 C -0.279 4.279 13 C 0.017 3.983 14 C -0.132 4.132 15 C -0.177 4.177 16 C 0.077 3.923 17 N -0.422 5.422 18 C -0.012 4.012 19 O -0.239 6.239 20 C 0.513 3.487 21 F -0.146 7.146 22 F -0.146 7.146 23 F -0.122 7.122 24 C -0.189 4.189 25 C -0.013 4.013 26 N -0.199 5.199 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.226 0.774 33 H 0.223 0.777 34 H 0.149 0.851 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.228 -11.163 0.011 13.299 hybrid contribution 0.397 -0.140 0.002 0.421 sum -6.831 -11.303 0.013 13.207 Atomic orbital electron populations 1.70128 1.07357 1.28491 1.25859 1.26192 0.95023 1.01485 0.93771 0.86300 0.80104 0.79937 0.80097 1.18715 1.19982 1.18712 1.19735 0.94640 0.89628 1.39656 0.89436 1.18666 0.88552 0.91966 0.88015 1.21414 0.98876 0.93553 1.15506 1.20619 0.92880 0.96763 0.95609 1.18930 0.93081 0.92110 1.23761 1.18436 0.90826 0.93028 0.96019 1.21004 0.99790 0.90981 1.01432 1.20300 0.90184 0.98873 1.08359 1.16832 0.90484 0.83532 1.01492 1.42074 1.08549 1.04646 1.86923 1.17930 0.77648 0.94154 1.11513 1.86200 1.21730 1.25690 1.90322 1.19323 0.76251 0.78115 0.75006 1.93320 1.90415 1.79454 1.51382 1.93318 1.90424 1.79405 1.51431 1.93263 1.26950 1.95585 1.96405 1.21307 0.95280 0.95765 1.06583 1.22727 0.98472 0.88003 0.92063 1.68804 1.07062 1.26273 1.17729 0.91080 0.88111 0.88231 0.85699 0.85649 0.77449 0.77663 0.85072 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.96 11.44 55.55 0.64 -17.33 16 2 C 0.06 1.53 5.50 -17.33 -0.10 1.43 16 3 Si 0.91 17.70 29.56 -169.99 -5.02 12.67 16 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.41 -10.41 9.11 -37.90 -0.35 -10.76 16 8 H 0.09 2.06 7.85 -52.48 -0.41 1.64 16 9 C 0.25 6.64 6.55 -84.98 -0.56 6.09 16 10 C -0.27 -6.38 9.76 -39.16 -0.38 -6.76 16 11 C -0.04 -0.77 9.46 -39.37 -0.37 -1.14 16 12 C -0.27 -6.03 5.92 -104.46 -0.62 -6.65 16 13 C 0.02 0.38 5.88 -104.85 -0.62 -0.24 16 14 C -0.11 -1.82 9.43 -39.18 -0.37 -2.19 16 15 C -0.15 -2.12 9.87 -39.46 -0.39 -2.51 16 16 C 0.18 2.53 6.77 -83.54 -0.57 1.96 16 17 N -0.88 -9.23 9.07 32.55 0.30 -8.93 16 18 C 0.03 0.53 6.50 -39.11 -0.25 0.27 16 19 O -0.32 -4.66 9.60 -19.73 -0.19 -4.85 16 20 C 0.60 8.62 3.42 101.05 0.35 8.97 16 21 F -0.16 -2.50 15.56 2.25 0.04 -2.46 16 22 F -0.16 -2.50 15.56 2.25 0.04 -2.46 16 23 F -0.14 -1.78 17.53 2.25 0.04 -1.74 16 24 C -0.17 -3.07 7.64 -39.07 -0.30 -3.36 16 25 C 0.16 3.80 10.60 -17.10 -0.18 3.61 16 26 N -0.49 -13.18 7.83 -10.83 -0.08 -13.27 16 27 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 28 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 29 H 0.10 1.81 6.28 -52.49 -0.33 1.48 16 30 H 0.13 1.83 6.24 -52.49 -0.33 1.51 16 31 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.40 3.90 8.17 -40.82 -0.33 3.57 16 33 H 0.40 3.10 8.84 -40.82 -0.36 2.74 16 34 H 0.13 2.41 3.23 -52.49 -0.17 2.24 16 35 H 0.12 2.65 6.20 -52.49 -0.33 2.32 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -28.24 315.11 -6.45 -34.69 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -2.24 Total: 10.20 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -4.70 Total: -11.28 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.85 Total: -39.53 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.19 Total: -4.85 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.11 Total: -6.66 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.02 Total: 12.67 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.24 -6.45 -34.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244267353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.875 kcal (2) G-P(sol) polarization free energy of solvation -28.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds