Wall clock time and date at job start Tue Mar 31 2020 13:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86797 * 120.00242 * 2 1 4 4 H 1.48504 * 109.46786 * 239.99835 * 3 2 1 5 5 H 1.48494 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47318 * 119.99937 * 3 2 1 7 7 C 1.38655 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99640 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.35660 * 116.99444 * 185.06025 * 9 7 2 11 11 C 1.38708 * 120.12991 * 354.40397 * 10 9 7 12 12 C 1.38325 * 120.03231 * 179.97438 * 11 10 9 13 13 F 1.35099 * 119.86616 * 179.97438 * 12 11 10 14 14 C 1.38681 * 120.27049 * 359.95454 * 12 11 10 15 15 C 1.37967 * 120.24734 * 0.04222 * 14 12 11 16 16 C 1.39304 * 119.96824 * 359.97438 * 15 14 12 17 17 C 1.48277 * 120.13430 * 180.02562 * 16 15 14 18 18 C 1.39379 * 120.09891 * 129.72450 * 17 16 15 19 19 C 1.38238 * 119.89595 * 179.77298 * 18 17 16 20 20 F 1.35103 * 119.94773 * 180.25588 * 19 18 17 21 21 C 1.38513 * 120.10061 * 0.52441 * 19 18 17 22 22 C 1.50702 * 119.89655 * 179.72502 * 21 19 18 23 23 O 1.42895 * 109.47268 * 269.98160 * 22 21 19 24 24 C 1.38509 * 120.20825 * 359.70558 * 21 19 18 25 25 F 1.35101 * 119.95356 * 180.02562 * 24 21 19 26 26 C 1.38249 * 120.10164 * 0.04119 * 24 21 19 27 27 H 0.97006 * 120.00223 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.98027 * 359.97083 * 11 10 9 29 29 H 1.08004 * 119.87828 * 180.02562 * 14 12 11 30 30 H 1.07994 * 120.01792 * 180.25446 * 15 14 12 31 31 H 1.08002 * 120.04798 * 0.02562 * 18 17 16 32 32 H 1.08997 * 109.46989 * 29.98290 * 22 21 19 33 33 H 1.09003 * 109.46921 * 149.97961 * 22 21 19 34 34 H 0.96705 * 114.00439 * 179.97438 * 23 22 21 35 35 H 1.08000 * 120.04924 * 179.97438 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6962 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0087 -1.2008 0.0005 8 1 3.0887 -1.2008 0.0010 9 8 1.3346 -2.3683 0.0005 10 6 2.0693 -3.5036 0.1077 11 6 3.4549 -3.4401 0.0942 12 6 4.2021 -4.5990 0.2041 13 9 5.5515 -4.5333 0.1901 14 6 3.5719 -5.8280 0.3291 15 6 2.1944 -5.9043 0.3439 16 6 1.4319 -4.7436 0.2335 17 6 -0.0487 -4.8213 0.2496 18 6 -0.7825 -4.0009 1.1046 19 6 -2.1629 -4.0735 1.1128 20 9 -2.8754 -3.2750 1.9374 21 6 -2.8165 -4.9674 0.2807 22 6 -4.3213 -5.0471 0.2978 23 8 -4.7362 -6.0130 1.2656 24 6 -2.0913 -5.7881 -0.5673 25 9 -2.7341 -6.6578 -1.3770 26 6 -0.7107 -5.7189 -0.5861 27 1 -0.4851 0.8401 -0.0004 28 1 3.9505 -2.4854 -0.0022 29 1 4.1615 -6.7288 0.4149 30 1 1.7074 -6.8628 0.4455 31 1 -0.2735 -3.3067 1.7569 32 1 -4.7338 -4.0721 0.5575 33 1 -4.6807 -5.3428 -0.6879 34 1 -5.6954 -6.1170 1.3314 35 1 -0.1461 -6.3595 -1.2473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244343978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:54 Heat of formation + Delta-G solvation = -163.224502 kcal Electronic energy + Delta-G solvation = -26714.245836 eV Core-core repulsion = 22228.547969 eV Total energy + Delta-G solvation = -4485.697867 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.80150 -48.61259 -48.43674 -39.65033 -38.32238 -36.79501 -36.28278 -32.59408 -32.29199 -30.04785 -29.64235 -28.98217 -25.80263 -25.39576 -22.82563 -22.37685 -21.77446 -20.74587 -18.45260 -18.00190 -17.55266 -17.30181 -17.09932 -15.80565 -15.69039 -15.53103 -15.38929 -15.21926 -15.06516 -14.97752 -14.95505 -14.37470 -14.15893 -14.10005 -13.74759 -13.47427 -13.41638 -12.82722 -12.61430 -12.42098 -11.93294 -11.65185 -11.59251 -11.52939 -11.27312 -10.88681 -10.87082 -10.81194 -10.59656 -10.11077 -9.77885 -9.05784 -8.86837 -8.37917 -8.11269 -7.45776 -6.67560 -4.27064 0.99546 1.38146 1.83546 1.99637 3.02807 3.03675 3.06824 3.60886 3.78745 4.10991 4.15757 4.35006 4.69488 4.70765 4.81545 4.85834 4.90858 5.00192 5.10340 5.35893 5.41617 5.46402 5.59586 5.61810 5.87473 5.95611 6.08176 6.17925 6.28359 6.39977 6.58286 6.61815 6.71780 6.78134 6.91584 7.08587 7.15268 7.46082 7.55030 7.74155 8.75860 9.36279 10.47468 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.005082 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.946300 B = 5508.066566 C = 7748.215922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.047 3.953 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.400 4.400 8 H 0.096 0.904 9 O -0.150 6.150 10 C 0.189 3.811 11 C -0.269 4.269 12 C 0.152 3.848 13 F -0.149 7.149 14 C -0.250 4.250 15 C -0.024 4.024 16 C -0.156 4.156 17 C 0.057 3.943 18 C -0.127 4.127 19 C 0.154 3.846 20 F -0.129 7.129 21 C -0.182 4.182 22 C 0.124 3.876 23 O -0.565 6.565 24 C 0.141 3.859 25 F -0.135 7.135 26 C -0.166 4.166 27 H 0.275 0.725 28 H 0.143 0.857 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.148 0.852 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.378 0.622 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 -8.608 0.299 9.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.160 4.160 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.475 4.475 8 H 0.113 0.887 9 O -0.051 6.051 10 C 0.132 3.868 11 C -0.290 4.290 12 C 0.133 3.867 13 F -0.128 7.128 14 C -0.270 4.270 15 C -0.042 4.042 16 C -0.158 4.158 17 C 0.057 3.943 18 C -0.146 4.146 19 C 0.134 3.866 20 F -0.108 7.108 21 C -0.184 4.184 22 C 0.047 3.953 23 O -0.371 6.371 24 C 0.121 3.879 25 F -0.114 7.114 26 C -0.185 4.185 27 H 0.085 0.915 28 H 0.160 0.840 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.166 0.834 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.225 0.775 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.567 -8.395 0.353 9.128 hybrid contribution 0.006 1.033 -0.199 1.052 sum -3.562 -7.362 0.153 8.180 Atomic orbital electron populations 1.70017 1.05960 1.28426 1.43339 1.25331 0.95890 0.98969 0.95834 0.85750 0.78819 0.79347 0.79466 1.19279 1.20068 1.19234 1.21376 0.92023 0.80446 1.53669 0.88700 1.83989 1.34040 1.11373 1.75670 1.18894 0.89021 0.87489 0.91430 1.20987 0.93967 0.98481 1.15522 1.17555 0.75911 0.94369 0.98895 1.91431 1.30179 1.97371 1.93786 1.20466 0.94874 0.95918 1.15717 1.20544 0.92330 0.96375 0.94948 1.17668 0.90401 0.91391 1.16323 1.18101 0.92181 0.92147 0.91889 1.21323 0.91256 1.00706 1.01311 1.16987 0.89161 0.90409 0.90009 1.91497 1.78263 1.71396 1.69605 1.19382 0.95761 1.01385 1.01878 1.20671 0.89914 0.92500 0.92235 1.86573 1.27561 1.61815 1.61117 1.16896 0.89844 0.89751 0.91376 1.91469 1.82021 1.67082 1.70781 1.21154 0.91738 1.02914 1.02694 0.91492 0.83956 0.85874 0.85449 0.83420 0.91990 0.92202 0.77483 0.84122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.83 13.67 55.48 0.76 -22.07 16 2 C 0.05 1.19 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 19.22 29.55 -169.99 -5.02 14.20 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.40 -10.21 9.49 30.89 0.29 -9.91 16 8 H 0.10 2.25 5.21 -52.49 -0.27 1.98 16 9 O -0.15 -3.81 8.12 0.37 0.00 -3.81 16 10 C 0.19 4.12 6.56 -38.75 -0.25 3.87 16 11 C -0.27 -5.51 9.14 -39.38 -0.36 -5.87 16 12 C 0.15 2.78 7.29 -39.39 -0.29 2.50 16 13 F -0.15 -2.64 17.26 2.25 0.04 -2.60 16 14 C -0.25 -4.04 10.01 -39.52 -0.40 -4.43 16 15 C -0.02 -0.38 9.50 -39.28 -0.37 -0.75 16 16 C -0.16 -2.97 5.49 -104.72 -0.57 -3.54 16 17 C 0.06 1.06 5.27 -104.92 -0.55 0.51 16 18 C -0.13 -2.50 8.76 -39.16 -0.34 -2.84 16 19 C 0.15 2.88 7.23 -39.48 -0.29 2.59 16 20 F -0.13 -2.44 16.46 2.25 0.04 -2.41 16 21 C -0.18 -3.09 5.53 -104.42 -0.58 -3.66 16 22 C 0.12 1.72 6.81 36.01 0.25 1.97 16 23 O -0.56 -7.51 13.64 -35.23 -0.48 -7.99 16 24 C 0.14 2.32 7.23 -39.48 -0.29 2.03 16 25 F -0.14 -2.09 16.46 2.25 0.04 -2.05 16 26 C -0.17 -2.72 9.49 -39.16 -0.37 -3.10 16 27 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.14 2.93 5.64 -52.48 -0.30 2.63 16 29 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 30 H 0.13 1.65 8.04 -52.49 -0.42 1.23 16 31 H 0.15 3.12 7.70 -52.49 -0.40 2.71 16 32 H 0.06 0.81 7.63 -51.93 -0.40 0.41 16 33 H 0.06 0.73 7.63 -51.93 -0.40 0.34 16 34 H 0.38 2.89 9.12 45.56 0.42 3.30 16 35 H 0.14 1.98 8.04 -52.49 -0.42 1.56 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -28.70 325.14 -5.70 -34.40 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -1.75 Total: 6.98 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -4.22 Total: -19.55 kcal Atomic # 7 Polarization: -22.83 SS G_CDS: 0.76 Total: -22.07 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.48 Total: -11.79 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.11 Total: -7.06 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.70 -5.70 -34.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244343978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.826 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds