Wall clock time and date at job start Tue Mar 31 2020 13:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86797 * 120.00242 * 2 1 4 4 H 1.48504 * 109.46786 * 239.99835 * 3 2 1 5 5 H 1.48494 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47318 * 119.99937 * 3 2 1 7 7 C 1.38655 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99640 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.35660 * 116.99444 * 185.06025 * 9 7 2 11 11 C 1.38708 * 120.12991 * 354.40397 * 10 9 7 12 12 C 1.38325 * 120.03231 * 179.97438 * 11 10 9 13 13 F 1.35099 * 119.86616 * 179.97438 * 12 11 10 14 14 C 1.38681 * 120.27049 * 359.95454 * 12 11 10 15 15 C 1.37967 * 120.24734 * 0.04222 * 14 12 11 16 16 C 1.39304 * 119.96824 * 359.97438 * 15 14 12 17 17 C 1.48277 * 120.13430 * 180.02562 * 16 15 14 18 18 C 1.39379 * 120.09891 * 129.72450 * 17 16 15 19 19 C 1.38238 * 119.89595 * 179.77298 * 18 17 16 20 20 F 1.35103 * 119.94773 * 180.25588 * 19 18 17 21 21 C 1.38513 * 120.10061 * 0.52441 * 19 18 17 22 22 C 1.50702 * 119.89655 * 179.72502 * 21 19 18 23 23 O 1.42895 * 109.47268 * 269.98160 * 22 21 19 24 24 C 1.38509 * 120.20825 * 359.70558 * 21 19 18 25 25 F 1.35101 * 119.95356 * 180.02562 * 24 21 19 26 26 C 1.38249 * 120.10164 * 0.04119 * 24 21 19 27 27 H 0.97006 * 120.00223 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.98027 * 359.97083 * 11 10 9 29 29 H 1.08004 * 119.87828 * 180.02562 * 14 12 11 30 30 H 1.07994 * 120.01792 * 180.25446 * 15 14 12 31 31 H 1.08002 * 120.04798 * 0.02562 * 18 17 16 32 32 H 1.08997 * 109.46989 * 29.98290 * 22 21 19 33 33 H 1.09003 * 109.46921 * 149.97961 * 22 21 19 34 34 H 0.96705 * 114.00439 * 179.97438 * 23 22 21 35 35 H 1.08000 * 120.04924 * 179.97438 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6962 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0087 -1.2008 0.0005 8 1 3.0887 -1.2008 0.0010 9 8 1.3346 -2.3683 0.0005 10 6 2.0693 -3.5036 0.1077 11 6 3.4549 -3.4401 0.0942 12 6 4.2021 -4.5990 0.2041 13 9 5.5515 -4.5333 0.1901 14 6 3.5719 -5.8280 0.3291 15 6 2.1944 -5.9043 0.3439 16 6 1.4319 -4.7436 0.2335 17 6 -0.0487 -4.8213 0.2496 18 6 -0.7825 -4.0009 1.1046 19 6 -2.1629 -4.0735 1.1128 20 9 -2.8754 -3.2750 1.9374 21 6 -2.8165 -4.9674 0.2807 22 6 -4.3213 -5.0471 0.2978 23 8 -4.7362 -6.0130 1.2656 24 6 -2.0913 -5.7881 -0.5673 25 9 -2.7341 -6.6578 -1.3770 26 6 -0.7107 -5.7189 -0.5861 27 1 -0.4851 0.8401 -0.0004 28 1 3.9505 -2.4854 -0.0022 29 1 4.1615 -6.7288 0.4149 30 1 1.7074 -6.8628 0.4455 31 1 -0.2735 -3.3067 1.7569 32 1 -4.7338 -4.0721 0.5575 33 1 -4.6807 -5.3428 -0.6879 34 1 -5.6954 -6.1170 1.3314 35 1 -0.1461 -6.3595 -1.2473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244343978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:54 Heat of formation + Delta-G solvation = -180.345770 kcal Electronic energy + Delta-G solvation = -26714.988270 eV Core-core repulsion = 22228.547969 eV Total energy + Delta-G solvation = -4486.440301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.08738 -50.07162 -49.88821 -41.18955 -39.75421 -38.17114 -37.55762 -34.37366 -33.70041 -31.47303 -31.08905 -30.43040 -27.52202 -26.77257 -24.25916 -23.77795 -23.28039 -22.16712 -20.13852 -19.52593 -18.78903 -18.58659 -18.48501 -17.23745 -17.10274 -16.99131 -16.87835 -16.67252 -16.50178 -16.40381 -16.35290 -15.99109 -15.50265 -15.41903 -15.17289 -15.09928 -14.83785 -14.17864 -13.98395 -13.88409 -13.55479 -13.12494 -13.00870 -12.91462 -12.81380 -12.37912 -12.31007 -12.18793 -12.15415 -11.52469 -11.11489 -10.84457 -10.27936 -9.78120 -9.60195 -9.01143 -8.51810 -6.19916 -0.41114 -0.02356 0.36568 0.51667 1.34687 1.43304 1.48946 2.12088 2.22024 2.64224 2.74252 3.02741 3.19110 3.22455 3.36371 3.40180 3.55538 3.59950 3.94111 3.97095 4.10683 4.19925 4.29828 4.37635 4.39122 4.56054 4.74547 4.78211 4.87820 4.96859 5.05167 5.15861 5.21912 5.24579 5.35259 5.53618 5.71690 5.92154 5.99511 6.82157 6.91498 7.62369 8.67335 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.005082 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.946300 B = 5508.066566 C = 7748.215922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.007 4.007 3 Si 1.009 2.991 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.420 4.420 8 H 0.101 0.899 9 O -0.194 6.194 10 C 0.162 3.838 11 C -0.285 4.285 12 C 0.145 3.855 13 F -0.144 7.144 14 C -0.220 4.220 15 C -0.012 4.012 16 C -0.156 4.156 17 C 0.043 3.957 18 C -0.144 4.144 19 C 0.135 3.865 20 F -0.137 7.137 21 C -0.181 4.181 22 C 0.125 3.875 23 O -0.580 6.580 24 C 0.143 3.857 25 F -0.124 7.124 26 C -0.151 4.151 27 H 0.274 0.726 28 H 0.130 0.870 29 H 0.165 0.835 30 H 0.173 0.827 31 H 0.118 0.882 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.403 0.597 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.166 -11.591 -0.328 12.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.208 4.208 3 Si 0.829 3.171 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.496 4.496 8 H 0.118 0.882 9 O -0.097 6.097 10 C 0.109 3.891 11 C -0.305 4.305 12 C 0.126 3.874 13 F -0.123 7.123 14 C -0.239 4.239 15 C -0.030 4.030 16 C -0.157 4.157 17 C 0.042 3.958 18 C -0.163 4.163 19 C 0.116 3.884 20 F -0.116 7.116 21 C -0.183 4.183 22 C 0.048 3.952 23 O -0.390 6.390 24 C 0.124 3.876 25 F -0.102 7.102 26 C -0.170 4.170 27 H 0.083 0.917 28 H 0.148 0.852 29 H 0.183 0.817 30 H 0.190 0.810 31 H 0.136 0.864 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.254 0.746 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.980 -11.435 -0.268 11.820 hybrid contribution -0.109 1.580 0.026 1.584 sum -3.090 -9.855 -0.243 10.331 Atomic orbital electron populations 1.70152 1.07655 1.28989 1.46737 1.26403 0.96713 1.02250 0.95427 0.84767 0.77569 0.74890 0.79844 1.18330 1.19670 1.18427 1.21739 0.92481 0.81291 1.54076 0.88219 1.83988 1.34875 1.12012 1.78868 1.19424 0.89798 0.87835 0.92043 1.21021 0.93842 0.99207 1.16397 1.17680 0.76100 0.94536 0.99103 1.91445 1.29756 1.97378 1.93732 1.20988 0.95194 0.96225 1.11485 1.21047 0.92218 0.96944 0.92756 1.18023 0.91088 0.91348 1.15259 1.18136 0.92073 0.92945 0.92599 1.21210 0.92011 1.01005 1.02096 1.17127 0.88925 0.91379 0.91003 1.91466 1.78291 1.71818 1.69995 1.19735 0.97759 1.00154 1.00664 1.20696 0.87857 0.93154 0.93539 1.86499 1.30154 1.61385 1.60931 1.16886 0.89935 0.89618 0.91170 1.91501 1.81817 1.66571 1.70327 1.21372 0.91928 1.01963 1.01705 0.91702 0.85237 0.81704 0.80982 0.86437 0.91622 0.90065 0.74603 0.81008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.83 13.67 21.61 0.30 -51.54 16 2 C -0.01 -0.40 5.49 84.83 0.47 0.07 16 3 Si 1.01 41.07 29.55 68.60 2.03 43.10 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.42 -22.78 9.49 67.92 0.64 -22.14 16 8 H 0.10 5.03 5.21 -2.91 -0.02 5.02 16 9 O -0.19 -10.46 8.12 -21.58 -0.18 -10.63 16 10 C 0.16 7.30 6.56 22.81 0.15 7.45 16 11 C -0.28 -11.79 9.14 22.40 0.20 -11.59 16 12 C 0.15 5.01 7.29 22.40 0.16 5.17 16 13 F -0.14 -4.80 17.26 44.97 0.78 -4.02 16 14 C -0.22 -6.10 10.01 22.31 0.22 -5.88 16 15 C -0.01 -0.33 9.50 22.46 0.21 -0.12 16 16 C -0.16 -5.76 5.49 -19.92 -0.11 -5.87 16 17 C 0.04 1.57 5.27 -20.06 -0.11 1.47 16 18 C -0.14 -5.94 8.76 22.54 0.20 -5.74 16 19 C 0.14 5.20 7.23 22.34 0.16 5.36 16 20 F -0.14 -5.43 16.46 44.97 0.74 -4.69 16 21 C -0.18 -5.97 5.53 -19.73 -0.11 -6.08 16 22 C 0.12 3.25 6.81 71.24 0.48 3.74 16 23 O -0.58 -14.15 13.64 -148.98 -2.03 -16.18 16 24 C 0.14 4.40 7.23 22.34 0.16 4.56 16 25 F -0.12 -3.41 16.46 44.97 0.74 -2.67 16 26 C -0.15 -4.58 9.49 22.54 0.21 -4.37 16 27 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 28 H 0.13 5.59 5.64 -2.91 -0.02 5.57 16 29 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.17 3.36 8.04 -2.91 -0.02 3.33 16 31 H 0.12 5.47 7.70 -2.91 -0.02 5.45 16 32 H 0.07 1.65 7.63 -2.39 -0.02 1.63 16 33 H 0.08 1.76 7.63 -2.39 -0.02 1.75 16 34 H 0.40 5.14 9.12 -74.05 -0.68 4.46 16 35 H 0.17 4.07 8.04 -2.91 -0.02 4.04 16 Total: -1.00 -66.67 325.14 5.85 -60.82 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.51 Total: 19.80 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 2.96 Total: -33.97 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.30 Total: -51.54 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -2.21 Total: -26.82 kcal Atomic # 9 Polarization: -13.65 SS G_CDS: 2.26 Total: -11.39 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -66.67 5.85 -60.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244343978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.523 kcal (2) G-P(sol) polarization free energy of solvation -66.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds