Wall clock time and date at job start Tue Mar 31 2020 13:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86807 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46653 * 270.27619 * 3 2 1 5 5 H 1.48497 * 109.47230 * 30.27469 * 3 2 1 6 6 H 1.48499 * 109.46839 * 150.27688 * 3 2 1 7 7 C 1.38635 * 119.99930 * 180.27231 * 2 1 3 8 8 H 1.08001 * 120.00123 * 359.72965 * 7 2 1 9 9 O 1.34820 * 119.99956 * 179.71845 * 7 2 1 10 10 C 1.35667 * 116.99839 * 174.94030 * 9 7 2 11 11 C 1.38695 * 120.12288 * 5.60880 * 10 9 7 12 12 C 1.38350 * 120.02710 * 179.74448 * 11 10 9 13 13 F 1.35095 * 119.86186 * 180.27074 * 12 11 10 14 14 C 1.38668 * 120.27040 * 0.55377 * 12 11 10 15 15 C 1.37974 * 120.24733 * 359.70025 * 14 12 11 16 16 C 1.39308 * 119.97069 * 0.02562 * 15 14 12 17 17 C 1.48243 * 120.13854 * 179.97438 * 16 15 14 18 18 C 1.39579 * 120.14712 * 269.74942 * 17 16 15 19 19 F 1.35092 * 120.07890 * 359.97206 * 18 17 16 20 20 C 1.38251 * 119.84409 * 179.70206 * 18 17 16 21 21 C 1.38305 * 120.14793 * 0.56836 * 20 18 17 22 22 C 1.50703 * 119.84383 * 179.70238 * 21 20 18 23 23 O 1.42899 * 109.47121 * 270.02372 * 22 21 20 24 24 C 1.38305 * 120.30685 * 359.72390 * 21 20 18 25 25 C 1.38237 * 120.15232 * 359.97438 * 24 21 20 26 26 F 1.35097 * 120.07785 * 179.97438 * 25 24 21 27 27 H 0.97001 * 120.00443 * 359.72282 * 1 2 3 28 28 H 1.08001 * 119.98663 * 0.02562 * 11 10 9 29 29 H 1.07999 * 119.87550 * 179.72328 * 14 12 11 30 30 H 1.08005 * 120.01461 * 180.02562 * 15 14 12 31 31 H 1.07994 * 119.92645 * 180.31732 * 20 18 17 32 32 H 1.08999 * 109.47292 * 30.02447 * 22 21 20 33 33 H 1.08998 * 109.47321 * 150.02383 * 22 21 20 34 34 H 0.96700 * 114.00324 * 180.02562 * 23 22 21 35 35 H 1.07999 * 119.92040 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4912 2.0498 -1.4001 5 1 1.4500 2.6510 0.7058 6 1 3.5500 1.4385 0.6942 7 6 2.0088 -1.2006 -0.0057 8 1 1.4688 -2.1359 -0.0057 9 8 3.3570 -1.2006 -0.0114 10 6 3.9733 -2.4049 0.0898 11 6 3.2254 -3.5729 0.0760 12 6 3.8564 -4.8002 0.1740 13 9 3.1252 -5.9360 0.1547 14 6 5.2358 -4.8691 0.2979 15 6 5.9904 -3.7141 0.3181 16 6 5.3660 -2.4731 0.2144 17 6 6.1730 -1.2297 0.2363 18 6 6.4447 -0.5916 1.4475 19 9 5.9723 -1.1052 2.6043 20 6 7.2032 0.5642 1.4613 21 6 7.6824 1.0947 0.2773 22 6 8.5029 2.3586 0.2997 23 8 7.6382 3.4900 0.1802 24 6 7.4119 0.4708 -0.9270 25 6 6.6600 -0.6889 -0.9547 26 9 6.3962 -1.2967 -2.1320 27 1 -0.4851 0.8400 0.0041 28 1 2.1504 -3.5245 -0.0159 29 1 5.7214 -5.8304 0.3784 30 1 7.0646 -3.7721 0.4143 31 1 7.4185 1.0562 2.3982 32 1 9.0521 2.4187 1.2392 33 1 9.2066 2.3497 -0.5326 34 1 8.0992 4.3399 0.1869 35 1 7.7889 0.8907 -1.8478 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244362170.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:57 Heat of formation + Delta-G solvation = -157.376579 kcal Electronic energy + Delta-G solvation = -27250.583976 eV Core-core repulsion = 22765.139694 eV Total energy + Delta-G solvation = -4485.444282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.69158 -48.66545 -48.40100 -39.60235 -38.82227 -36.84883 -36.38100 -32.67134 -32.41016 -30.27630 -29.75951 -29.08898 -26.01870 -25.34530 -22.74725 -22.48828 -21.79393 -20.94214 -18.23484 -17.92634 -17.71950 -17.47064 -17.20464 -16.45411 -15.91089 -15.59180 -15.48754 -15.20037 -15.10202 -14.97526 -14.72957 -14.36264 -14.32251 -14.11300 -13.84003 -13.52660 -13.32616 -12.91276 -12.54298 -12.37831 -12.26643 -11.94576 -11.93392 -11.52932 -11.22388 -11.02722 -10.86502 -10.79152 -10.33147 -10.32835 -9.66272 -8.99633 -8.67572 -8.61861 -8.26924 -7.63435 -6.54488 -4.22548 0.96168 1.12148 1.62715 1.97742 3.18518 3.22339 3.28561 3.38667 3.96903 4.06638 4.15775 4.30050 4.41179 4.51814 4.67247 4.79030 4.89269 4.93085 5.01848 5.04459 5.11201 5.17989 5.39382 5.60003 5.70216 5.86681 5.94792 6.03658 6.11269 6.18677 6.26782 6.51829 6.70074 6.74000 6.86352 6.93268 7.38246 7.38704 7.61089 7.86051 8.78761 9.34693 10.51657 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009976 B = 0.006447 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.106857 B = 4342.297273 C = 6158.446111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.072 3.928 3 Si 0.898 3.102 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.395 4.395 8 H 0.110 0.890 9 O -0.194 6.194 10 C 0.204 3.796 11 C -0.258 4.258 12 C 0.152 3.848 13 F -0.146 7.146 14 C -0.241 4.241 15 C -0.022 4.022 16 C -0.156 4.156 17 C -0.071 4.071 18 C 0.144 3.856 19 F -0.122 7.122 20 C -0.148 4.148 21 C -0.048 4.048 22 C 0.121 3.879 23 O -0.563 6.563 24 C -0.149 4.149 25 C 0.141 3.859 26 F -0.123 7.123 27 H 0.283 0.717 28 H 0.149 0.851 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.141 0.859 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.381 0.619 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.177 2.409 0.931 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.469 4.469 8 H 0.128 0.872 9 O -0.097 6.097 10 C 0.149 3.851 11 C -0.278 4.278 12 C 0.133 3.867 13 F -0.125 7.125 14 C -0.261 4.261 15 C -0.040 4.040 16 C -0.157 4.157 17 C -0.073 4.073 18 C 0.124 3.876 19 F -0.100 7.100 20 C -0.167 4.167 21 C -0.049 4.049 22 C 0.044 3.956 23 O -0.369 6.369 24 C -0.168 4.168 25 C 0.121 3.879 26 F -0.101 7.101 27 H 0.093 0.907 28 H 0.167 0.833 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.159 0.841 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.228 0.772 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 17.503 2.243 0.886 17.669 hybrid contribution 0.091 0.635 -0.022 0.642 sum 17.594 2.878 0.863 17.849 Atomic orbital electron populations 1.69638 1.05587 1.28886 1.46199 1.24457 0.95017 0.98903 0.95005 0.86269 0.80694 0.81312 0.79445 1.19516 1.20413 1.17865 1.20817 0.76416 0.96935 1.52771 0.87244 1.83591 1.23038 1.25007 1.78030 1.18623 0.89981 0.85284 0.91227 1.21093 1.02298 0.90352 1.14023 1.17531 0.89052 0.81252 0.98907 1.91439 1.77853 1.49467 1.93743 1.20480 0.91747 0.99000 1.14882 1.20447 0.98712 0.89753 0.95131 1.17422 0.89841 0.91512 1.16945 1.18573 1.00484 0.97223 0.91005 1.17374 0.95935 0.93026 0.81261 1.91532 1.86278 1.86300 1.45923 1.20918 1.00429 0.95758 0.99638 1.19116 0.98603 0.95378 0.91761 1.20918 0.90462 0.83497 1.00745 1.86644 1.36973 1.16189 1.97082 1.20907 1.01508 0.95245 0.99147 1.17372 0.97526 0.92241 0.80714 1.91531 1.92047 1.82356 1.44176 0.90707 0.83323 0.85660 0.85623 0.84140 0.92184 0.92181 0.77216 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.87 13.96 55.48 0.77 -24.10 16 2 C 0.07 2.01 5.49 -17.52 -0.10 1.91 16 3 Si 0.90 22.07 28.62 -169.99 -4.86 17.20 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.25 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.39 -11.09 9.94 30.88 0.31 -10.78 16 8 H 0.11 3.13 5.44 -52.49 -0.29 2.85 16 9 O -0.19 -5.12 8.03 0.33 0.00 -5.12 16 10 C 0.20 4.77 6.65 -38.75 -0.26 4.51 16 11 C -0.26 -5.74 9.14 -39.37 -0.36 -6.10 16 12 C 0.15 2.98 7.29 -39.38 -0.29 2.70 16 13 F -0.15 -2.78 17.26 2.25 0.04 -2.74 16 14 C -0.24 -4.14 10.01 -39.52 -0.40 -4.54 16 15 C -0.02 -0.38 9.77 -39.28 -0.38 -0.76 16 16 C -0.16 -3.14 4.61 -104.73 -0.48 -3.63 16 17 C -0.07 -1.33 4.84 -104.78 -0.51 -1.84 16 18 C 0.14 2.53 7.28 -39.08 -0.28 2.24 16 19 F -0.12 -2.27 16.82 2.25 0.04 -2.23 16 20 C -0.15 -2.15 9.66 -39.55 -0.38 -2.53 16 21 C -0.05 -0.64 5.51 -104.57 -0.58 -1.21 16 22 C 0.12 1.13 7.16 36.01 0.26 1.38 16 23 O -0.56 -6.13 13.64 -35.23 -0.48 -6.61 16 24 C -0.15 -2.13 9.66 -39.56 -0.38 -2.51 16 25 C 0.14 2.45 7.28 -39.08 -0.28 2.16 16 26 F -0.12 -2.23 16.82 2.25 0.04 -2.19 16 27 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.15 3.46 5.64 -52.49 -0.30 3.17 16 29 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.38 1.99 9.12 45.56 0.42 2.40 16 35 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -31.99 327.68 -5.46 -37.45 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -1.83 Total: 2.38 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -4.11 Total: -18.99 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.77 Total: -24.10 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.48 Total: -11.73 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.11 Total: -7.16 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.86 Total: 17.20 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.99 -5.46 -37.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244362170.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.923 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds