Wall clock time and date at job start Tue Mar 31 2020 13:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86807 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46653 * 270.27619 * 3 2 1 5 5 H 1.48497 * 109.47230 * 30.27469 * 3 2 1 6 6 H 1.48499 * 109.46839 * 150.27688 * 3 2 1 7 7 C 1.38635 * 119.99930 * 180.27231 * 2 1 3 8 8 H 1.08001 * 120.00123 * 359.72965 * 7 2 1 9 9 O 1.34820 * 119.99956 * 179.71845 * 7 2 1 10 10 C 1.35667 * 116.99839 * 174.94030 * 9 7 2 11 11 C 1.38695 * 120.12288 * 5.60880 * 10 9 7 12 12 C 1.38350 * 120.02710 * 179.74448 * 11 10 9 13 13 F 1.35095 * 119.86186 * 180.27074 * 12 11 10 14 14 C 1.38668 * 120.27040 * 0.55377 * 12 11 10 15 15 C 1.37974 * 120.24733 * 359.70025 * 14 12 11 16 16 C 1.39308 * 119.97069 * 0.02562 * 15 14 12 17 17 C 1.48243 * 120.13854 * 179.97438 * 16 15 14 18 18 C 1.39579 * 120.14712 * 269.74942 * 17 16 15 19 19 F 1.35092 * 120.07890 * 359.97206 * 18 17 16 20 20 C 1.38251 * 119.84409 * 179.70206 * 18 17 16 21 21 C 1.38305 * 120.14793 * 0.56836 * 20 18 17 22 22 C 1.50703 * 119.84383 * 179.70238 * 21 20 18 23 23 O 1.42899 * 109.47121 * 270.02372 * 22 21 20 24 24 C 1.38305 * 120.30685 * 359.72390 * 21 20 18 25 25 C 1.38237 * 120.15232 * 359.97438 * 24 21 20 26 26 F 1.35097 * 120.07785 * 179.97438 * 25 24 21 27 27 H 0.97001 * 120.00443 * 359.72282 * 1 2 3 28 28 H 1.08001 * 119.98663 * 0.02562 * 11 10 9 29 29 H 1.07999 * 119.87550 * 179.72328 * 14 12 11 30 30 H 1.08005 * 120.01461 * 180.02562 * 15 14 12 31 31 H 1.07994 * 119.92645 * 180.31732 * 20 18 17 32 32 H 1.08999 * 109.47292 * 30.02447 * 22 21 20 33 33 H 1.08998 * 109.47321 * 150.02383 * 22 21 20 34 34 H 0.96700 * 114.00324 * 180.02562 * 23 22 21 35 35 H 1.07999 * 119.92040 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4912 2.0498 -1.4001 5 1 1.4500 2.6510 0.7058 6 1 3.5500 1.4385 0.6942 7 6 2.0088 -1.2006 -0.0057 8 1 1.4688 -2.1359 -0.0057 9 8 3.3570 -1.2006 -0.0114 10 6 3.9733 -2.4049 0.0898 11 6 3.2254 -3.5729 0.0760 12 6 3.8564 -4.8002 0.1740 13 9 3.1252 -5.9360 0.1547 14 6 5.2358 -4.8691 0.2979 15 6 5.9904 -3.7141 0.3181 16 6 5.3660 -2.4731 0.2144 17 6 6.1730 -1.2297 0.2363 18 6 6.4447 -0.5916 1.4475 19 9 5.9723 -1.1052 2.6043 20 6 7.2032 0.5642 1.4613 21 6 7.6824 1.0947 0.2773 22 6 8.5029 2.3586 0.2997 23 8 7.6382 3.4900 0.1802 24 6 7.4119 0.4708 -0.9270 25 6 6.6600 -0.6889 -0.9547 26 9 6.3962 -1.2967 -2.1320 27 1 -0.4851 0.8400 0.0041 28 1 2.1504 -3.5245 -0.0159 29 1 5.7214 -5.8304 0.3784 30 1 7.0646 -3.7721 0.4143 31 1 7.4185 1.0562 2.3982 32 1 9.0521 2.4187 1.2392 33 1 9.2066 2.3497 -0.5326 34 1 8.0992 4.3399 0.1869 35 1 7.7889 0.8907 -1.8478 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244362170.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:57 Heat of formation + Delta-G solvation = -178.196055 kcal Electronic energy + Delta-G solvation = -27251.486776 eV Core-core repulsion = 22765.139694 eV Total energy + Delta-G solvation = -4486.347083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.03026 -50.00881 -49.98307 -41.20574 -40.05519 -38.35154 -37.37700 -34.60186 -33.82001 -31.44696 -31.35509 -30.47145 -27.58032 -26.83843 -23.95735 -23.89244 -23.41931 -22.29024 -20.15416 -19.63466 -18.79546 -18.43108 -18.36130 -17.80938 -17.47681 -17.19239 -16.83779 -16.70570 -16.68575 -16.33158 -15.99558 -15.96866 -15.68503 -15.47667 -15.15410 -15.08140 -15.02957 -14.32332 -14.15964 -13.79688 -13.68631 -13.26269 -13.18098 -12.93078 -12.82404 -12.49515 -12.45781 -12.24622 -12.10920 -11.66273 -11.03016 -10.94707 -9.91663 -9.89027 -9.82038 -9.33339 -8.62168 -6.36187 -0.22955 -0.07910 0.02164 0.36175 1.22955 1.26167 1.42780 2.13122 2.17301 2.43628 2.74194 2.81748 2.90778 3.18896 3.29888 3.37637 3.48444 3.84613 3.85525 3.96124 4.07826 4.10873 4.26065 4.39454 4.45118 4.55577 4.70755 4.74607 4.80311 4.94601 5.01662 5.10963 5.13718 5.22535 5.22969 5.52639 5.68632 5.72202 5.96184 6.70667 6.98081 7.37492 8.48914 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009976 B = 0.006447 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.106857 B = 4342.297273 C = 6158.446111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.261 1.261 6 H -0.265 1.265 7 C -0.406 4.406 8 H 0.084 0.916 9 O -0.221 6.221 10 C 0.172 3.828 11 C -0.277 4.277 12 C 0.142 3.858 13 F -0.143 7.143 14 C -0.207 4.207 15 C -0.017 4.017 16 C -0.149 4.149 17 C -0.102 4.102 18 C 0.119 3.881 19 F -0.137 7.137 20 C -0.142 4.142 21 C -0.043 4.043 22 C 0.121 3.879 23 O -0.593 6.593 24 C -0.140 4.140 25 C 0.120 3.880 26 F -0.135 7.135 27 H 0.288 0.712 28 H 0.123 0.877 29 H 0.171 0.829 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.404 0.596 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.463 3.263 1.132 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.185 1.185 6 H -0.190 1.190 7 C -0.481 4.481 8 H 0.101 0.899 9 O -0.127 6.127 10 C 0.120 3.880 11 C -0.298 4.298 12 C 0.123 3.877 13 F -0.121 7.121 14 C -0.226 4.226 15 C -0.034 4.034 16 C -0.150 4.150 17 C -0.104 4.104 18 C 0.100 3.900 19 F -0.115 7.115 20 C -0.160 4.160 21 C -0.043 4.043 22 C 0.044 3.956 23 O -0.404 6.404 24 C -0.159 4.159 25 C 0.100 3.900 26 F -0.114 7.114 27 H 0.098 0.902 28 H 0.141 0.859 29 H 0.189 0.811 30 H 0.188 0.812 31 H 0.186 0.814 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.256 0.744 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 21.825 3.074 1.087 22.067 hybrid contribution -0.976 0.133 -0.064 0.987 sum 20.849 3.207 1.023 21.119 Atomic orbital electron populations 1.69707 1.06701 1.29867 1.48726 1.25156 0.95775 1.01722 0.95012 0.85406 0.79022 0.78061 0.79574 1.18927 1.18488 1.18978 1.20717 0.77688 0.96336 1.53406 0.89860 1.83552 1.21569 1.26369 1.81175 1.19179 0.91582 0.84777 0.92450 1.21080 1.01393 0.91877 1.15402 1.17651 0.90238 0.80374 0.99464 1.91447 1.78081 1.48852 1.93736 1.21030 0.90238 1.01085 1.10284 1.21035 1.00915 0.88352 0.93145 1.17893 0.88630 0.93922 1.14559 1.18656 1.01879 0.97594 0.92291 1.17678 0.97455 0.94406 0.80504 1.91489 1.86773 1.86712 1.46527 1.21310 0.98891 0.94285 1.01544 1.19710 0.97400 0.96551 0.90653 1.21089 0.89665 0.81154 1.03693 1.86559 1.38675 1.17836 1.97292 1.21309 0.99936 0.93673 1.00981 1.17642 0.98931 0.93523 0.79869 1.91493 1.92390 1.82795 1.44691 0.90200 0.85906 0.81148 0.81165 0.81450 0.89312 0.89186 0.74432 0.81232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.90 13.96 21.61 0.30 -54.60 16 2 C 0.02 1.40 5.49 84.83 0.47 1.87 16 3 Si 0.96 46.90 28.62 68.60 1.96 48.86 16 4 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.41 -24.42 9.94 67.91 0.68 -23.74 16 8 H 0.08 5.26 5.44 -2.91 -0.02 5.24 16 9 O -0.22 -12.33 8.03 -21.73 -0.17 -12.50 16 10 C 0.17 8.37 6.65 22.81 0.15 8.52 16 11 C -0.28 -13.04 9.14 22.41 0.20 -12.83 16 12 C 0.14 5.53 7.29 22.40 0.16 5.69 16 13 F -0.14 -5.34 17.26 44.97 0.78 -4.56 16 14 C -0.21 -6.47 10.01 22.31 0.22 -6.25 16 15 C -0.02 -0.53 9.77 22.46 0.22 -0.31 16 16 C -0.15 -5.96 4.61 -19.93 -0.09 -6.06 16 17 C -0.10 -3.77 4.84 -19.97 -0.10 -3.87 16 18 C 0.12 4.06 7.28 22.60 0.16 4.23 16 19 F -0.14 -5.05 16.82 44.97 0.76 -4.29 16 20 C -0.14 -3.71 9.66 22.29 0.22 -3.50 16 21 C -0.04 -0.98 5.51 -19.83 -0.11 -1.08 16 22 C 0.12 1.64 7.16 71.24 0.51 2.15 16 23 O -0.59 -10.44 13.64 -148.98 -2.03 -12.47 16 24 C -0.14 -3.59 9.66 22.29 0.22 -3.38 16 25 C 0.12 4.00 7.28 22.59 0.16 4.17 16 26 F -0.14 -4.84 16.82 44.97 0.76 -4.09 16 27 H 0.29 15.87 8.31 -92.71 -0.77 15.10 16 28 H 0.12 6.33 5.64 -2.91 -0.02 6.31 16 29 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 30 H 0.17 3.92 8.06 -2.91 -0.02 3.89 16 31 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.09 0.73 8.08 -2.39 -0.02 0.71 16 33 H 0.09 0.72 8.08 -2.39 -0.02 0.70 16 34 H 0.40 2.54 9.12 -74.06 -0.68 1.86 16 35 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -75.20 327.68 5.93 -69.26 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.51 Total: 8.78 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 3.08 Total: -34.39 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.30 Total: -54.60 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -2.21 Total: -24.97 kcal Atomic # 9 Polarization: -15.23 SS G_CDS: 2.29 Total: -12.94 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.96 Total: 48.86 kcal Total: -75.20 5.93 -69.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244362170.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.934 kcal (2) G-P(sol) polarization free energy of solvation -75.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds