Wall clock time and date at job start Tue Mar 31 2020 14:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48506 * 109.47052 * 95.00881 * 3 2 1 5 5 H 1.48502 * 109.47138 * 215.00584 * 3 2 1 6 6 H 1.48494 * 109.47382 * 335.00738 * 3 2 1 7 7 C 1.40143 * 119.99822 * 180.26990 * 2 1 3 8 8 H 1.08001 * 119.99637 * 173.59933 * 7 2 1 9 9 C 1.41087 * 120.00403 * 353.60670 * 7 2 1 10 10 N 1.33647 * 119.13107 * 6.00250 * 9 7 2 11 11 C 1.31589 * 120.83067 * 179.71360 * 10 9 7 12 12 C 1.40430 * 119.09144 * 0.55605 * 11 10 9 13 13 C 1.47938 * 120.79282 * 179.70502 * 12 11 10 14 14 C 1.39667 * 120.14867 * 179.74529 * 13 12 11 15 15 C 1.37903 * 119.85018 * 179.78823 * 14 13 12 16 16 C 1.38425 * 120.14517 * 0.46625 * 15 14 13 17 17 C 1.50702 * 119.85050 * 179.76674 * 16 15 14 18 18 O 1.42895 * 109.46838 * 0.02562 * 17 16 15 19 19 C 1.38383 * 120.30164 * 359.78452 * 16 15 14 20 20 C 1.50707 * 119.92800 * 179.97438 * 19 16 15 21 21 F 1.39895 * 109.47099 * 180.02562 * 20 19 16 22 22 F 1.39897 * 109.46777 * 300.02320 * 20 19 16 23 23 F 1.39903 * 109.46967 * 60.02162 * 20 19 16 24 24 C 1.37945 * 120.14997 * 359.97438 * 19 16 15 25 25 C 1.40431 * 118.41789 * 359.72228 * 12 11 10 26 26 N 1.31586 * 119.09338 * 359.97438 * 25 12 11 27 27 H 0.97004 * 119.99688 * 359.72472 * 1 2 3 28 28 H 1.07995 * 120.45964 * 180.27390 * 11 10 9 29 29 H 1.08008 * 120.07760 * 0.02562 * 14 13 12 30 30 H 1.07998 * 119.92838 * 180.20323 * 15 14 13 31 31 H 1.09000 * 109.47014 * 120.01926 * 17 16 15 32 32 H 1.09000 * 109.46795 * 240.01852 * 17 16 15 33 33 H 0.96707 * 114.00280 * 180.02562 * 18 17 16 34 34 H 1.08004 * 120.07793 * 179.97438 * 24 19 16 35 35 H 1.08000 * 120.45153 * 180.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5939 1.9853 1.3948 5 1 3.4812 1.4731 -0.8032 6 1 1.3891 2.6809 -0.5915 7 6 2.0073 -1.2137 -0.0057 8 1 3.0823 -1.2161 -0.1100 9 6 1.3085 -2.4324 0.1246 10 7 -0.0279 -2.4186 0.1307 11 6 -0.7133 -3.5361 0.2448 12 6 -0.0214 -4.7514 0.3727 13 6 -0.7542 -6.0293 0.5099 14 6 -0.0524 -7.2308 0.6310 15 6 -0.7417 -8.4179 0.7629 16 6 -2.1259 -8.4214 0.7657 17 6 -2.8724 -9.7232 0.9050 18 8 -1.9380 -10.7983 1.0178 19 6 -2.8274 -7.2351 0.6409 20 6 -4.3344 -7.2488 0.6445 21 9 -4.8129 -5.9416 0.5060 22 9 -4.7961 -8.0297 -0.4204 23 9 -4.7930 -7.7880 1.8513 24 6 -2.1504 -6.0400 0.5133 25 6 1.3826 -4.7249 0.3678 26 7 2.0003 -3.5696 0.2437 27 1 -0.4850 0.8401 0.0040 28 1 -1.7931 -3.5185 0.2446 29 1 1.0276 -7.2298 0.6252 30 1 -0.2003 -9.3473 0.8599 31 1 -3.4974 -9.6899 1.7974 32 1 -3.5001 -9.8777 0.0274 33 1 -2.3491 -11.6687 1.1105 34 1 -2.6991 -5.1149 0.4155 35 1 1.9477 -5.6402 0.4637 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244585065.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:31 Heat of formation + Delta-G solvation = -133.626021 kcal Electronic energy + Delta-G solvation = -26382.743993 eV Core-core repulsion = 21930.622363 eV Total energy + Delta-G solvation = -4452.121630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.15771 -47.64273 -47.62105 -39.68784 -38.70855 -36.75047 -34.22916 -32.79590 -32.17998 -31.34996 -29.72162 -27.26151 -26.17467 -24.76067 -23.27858 -22.33414 -21.48536 -20.66734 -18.47300 -18.39382 -18.20328 -17.86337 -17.27106 -16.23696 -16.01590 -15.36017 -15.25854 -14.74610 -14.62678 -14.46258 -14.33256 -14.00492 -14.00122 -13.83436 -13.75214 -13.49065 -13.30945 -12.88407 -12.72922 -12.41767 -12.28279 -12.14405 -11.51377 -11.45603 -11.23594 -10.93827 -10.78525 -10.50500 -10.46761 -9.79422 -9.40024 -9.36168 -9.09285 -8.91192 -7.53590 -7.51833 -6.81717 -4.93981 1.06100 1.40098 2.48710 2.71959 2.82023 2.91522 2.95687 2.97417 3.68637 3.76424 3.85483 4.02238 4.10522 4.42251 4.53095 4.83859 5.07680 5.15623 5.28903 5.34124 5.52777 5.58516 5.65574 5.70729 5.81183 5.93202 6.08804 6.19833 6.39739 6.52236 6.56035 6.73342 6.86903 7.06476 7.21508 7.40367 7.43222 7.89228 8.21574 8.29517 8.86322 9.83245 10.02117 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.003040 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.818655 B = 9208.572752 C =10299.185124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.691 5.691 2 C 0.058 3.942 3 Si 0.925 3.075 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.273 1.273 7 C -0.367 4.367 8 H 0.099 0.901 9 C 0.376 3.624 10 N -0.507 5.507 11 C 0.186 3.814 12 C -0.338 4.338 13 C 0.044 3.956 14 C -0.121 4.121 15 C -0.081 4.081 16 C -0.093 4.093 17 C 0.109 3.891 18 O -0.565 6.565 19 C -0.165 4.165 20 C 0.507 3.493 21 F -0.175 7.175 22 F -0.181 7.181 23 F -0.181 7.181 24 C -0.102 4.102 25 C 0.193 3.807 26 N -0.591 5.591 27 H 0.282 0.718 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.381 0.619 34 H 0.136 0.864 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.040 -13.000 1.438 14.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.310 5.310 2 C -0.172 4.172 3 Si 0.748 3.252 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.197 1.197 7 C -0.400 4.400 8 H 0.117 0.883 9 C 0.145 3.855 10 N -0.223 5.223 11 C 0.008 3.992 12 C -0.349 4.349 13 C 0.042 3.958 14 C -0.140 4.140 15 C -0.099 4.099 16 C -0.093 4.093 17 C 0.032 3.968 18 O -0.371 6.371 19 C -0.166 4.166 20 C 0.453 3.547 21 F -0.156 7.156 22 F -0.162 7.162 23 F -0.162 7.162 24 C -0.121 4.121 25 C 0.017 3.983 26 N -0.309 5.309 27 H 0.093 0.907 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.153 0.847 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.228 0.772 34 H 0.154 0.846 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.255 -11.254 1.258 12.937 hybrid contribution -1.039 -0.664 0.172 1.245 sum -7.294 -11.919 1.430 14.046 Atomic orbital electron populations 1.70109 1.07560 1.29078 1.24271 1.26279 0.95180 1.01953 0.93759 0.86037 0.80252 0.79067 0.79886 1.18851 1.18065 1.19727 1.19582 0.95636 0.87973 1.36766 0.88316 1.19967 0.85923 0.90899 0.88694 1.69355 1.08286 1.26437 1.18221 1.23067 0.99100 0.87921 0.89148 1.19646 0.95332 0.93107 1.26767 1.18666 0.91424 0.92835 0.92889 1.21413 1.00316 0.91571 1.00657 1.20761 0.92569 0.98368 0.98207 1.19129 0.94663 0.91893 1.03640 1.21056 0.90322 0.84979 1.00476 1.86436 1.35975 1.17749 1.96896 1.19430 0.89497 0.95832 1.11854 1.18441 0.89320 0.73500 0.73427 1.93174 1.89954 1.36964 1.95508 1.93171 1.90644 1.75171 1.57219 1.93173 1.90738 1.86147 1.46150 1.20926 0.94349 0.96283 1.00504 1.22690 0.90394 0.95795 0.89377 1.68666 1.40701 0.98724 1.22801 0.90679 0.85047 0.85356 0.84663 0.91986 0.91977 0.77168 0.84614 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.03 11.43 55.56 0.64 -16.39 16 2 C 0.06 1.36 5.49 -17.33 -0.10 1.27 16 3 Si 0.92 17.21 29.56 -169.99 -5.03 12.19 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 5 H -0.26 -4.71 7.11 56.52 0.40 -4.30 16 6 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.37 -9.45 9.35 -37.79 -0.35 -9.80 16 8 H 0.10 2.41 7.86 -52.49 -0.41 2.00 16 9 C 0.38 10.10 7.35 -158.17 -1.16 8.93 16 10 N -0.51 -13.36 7.86 -12.41 -0.10 -13.45 16 11 C 0.19 4.24 10.70 -16.83 -0.18 4.06 16 12 C -0.34 -7.10 5.94 -104.27 -0.62 -7.72 16 13 C 0.04 0.78 5.88 -104.87 -0.62 0.16 16 14 C -0.12 -1.89 9.45 -39.17 -0.37 -2.26 16 15 C -0.08 -1.17 9.36 -39.64 -0.37 -1.54 16 16 C -0.09 -1.32 5.85 -104.50 -0.61 -1.93 16 17 C 0.11 1.23 6.17 36.01 0.22 1.46 16 18 O -0.57 -5.77 12.12 -35.23 -0.43 -6.19 16 19 C -0.16 -2.47 5.37 -104.67 -0.56 -3.04 16 20 C 0.51 6.99 2.88 36.01 0.10 7.09 16 21 F -0.17 -2.52 15.96 2.25 0.04 -2.48 16 22 F -0.18 -2.37 15.74 2.25 0.04 -2.34 16 23 F -0.18 -2.38 15.75 2.25 0.04 -2.34 16 24 C -0.10 -1.69 8.83 -39.17 -0.35 -2.04 16 25 C 0.19 4.19 10.70 -16.83 -0.18 4.01 16 26 N -0.59 -14.87 10.34 -12.41 -0.13 -15.00 16 27 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 28 H 0.13 2.65 6.33 -52.49 -0.33 2.32 16 29 H 0.13 1.79 6.29 -52.48 -0.33 1.46 16 30 H 0.14 1.77 6.99 -52.49 -0.37 1.40 16 31 H 0.06 0.65 6.94 -51.93 -0.36 0.29 16 32 H 0.06 0.66 6.94 -51.93 -0.36 0.29 16 33 H 0.38 1.93 9.12 45.56 0.42 2.35 16 34 H 0.14 2.19 5.38 -52.48 -0.28 1.91 16 35 H 0.13 2.39 6.33 -52.49 -0.33 2.05 16 LS Contribution 313.88 15.07 4.73 4.73 Total: -1.00 -29.13 313.88 -6.84 -35.97 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -1.50 Total: 6.65 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -5.14 Total: -1.33 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.41 Total: -44.84 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.43 Total: -6.19 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.11 Total: -7.16 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.13 -6.84 -35.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244585065.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.656 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds