Wall clock time and date at job start Tue Mar 31 2020 14:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48506 * 109.47052 * 95.00881 * 3 2 1 5 5 H 1.48502 * 109.47138 * 215.00584 * 3 2 1 6 6 H 1.48494 * 109.47382 * 335.00738 * 3 2 1 7 7 C 1.40143 * 119.99822 * 180.26990 * 2 1 3 8 8 H 1.08001 * 119.99637 * 173.59933 * 7 2 1 9 9 C 1.41087 * 120.00403 * 353.60670 * 7 2 1 10 10 N 1.33647 * 119.13107 * 6.00250 * 9 7 2 11 11 C 1.31589 * 120.83067 * 179.71360 * 10 9 7 12 12 C 1.40430 * 119.09144 * 0.55605 * 11 10 9 13 13 C 1.47938 * 120.79282 * 179.70502 * 12 11 10 14 14 C 1.39667 * 120.14867 * 179.74529 * 13 12 11 15 15 C 1.37903 * 119.85018 * 179.78823 * 14 13 12 16 16 C 1.38425 * 120.14517 * 0.46625 * 15 14 13 17 17 C 1.50702 * 119.85050 * 179.76674 * 16 15 14 18 18 O 1.42895 * 109.46838 * 0.02562 * 17 16 15 19 19 C 1.38383 * 120.30164 * 359.78452 * 16 15 14 20 20 C 1.50707 * 119.92800 * 179.97438 * 19 16 15 21 21 F 1.39895 * 109.47099 * 180.02562 * 20 19 16 22 22 F 1.39897 * 109.46777 * 300.02320 * 20 19 16 23 23 F 1.39903 * 109.46967 * 60.02162 * 20 19 16 24 24 C 1.37945 * 120.14997 * 359.97438 * 19 16 15 25 25 C 1.40431 * 118.41789 * 359.72228 * 12 11 10 26 26 N 1.31586 * 119.09338 * 359.97438 * 25 12 11 27 27 H 0.97004 * 119.99688 * 359.72472 * 1 2 3 28 28 H 1.07995 * 120.45964 * 180.27390 * 11 10 9 29 29 H 1.08008 * 120.07760 * 0.02562 * 14 13 12 30 30 H 1.07998 * 119.92838 * 180.20323 * 15 14 13 31 31 H 1.09000 * 109.47014 * 120.01926 * 17 16 15 32 32 H 1.09000 * 109.46795 * 240.01852 * 17 16 15 33 33 H 0.96707 * 114.00280 * 180.02562 * 18 17 16 34 34 H 1.08004 * 120.07793 * 179.97438 * 24 19 16 35 35 H 1.08000 * 120.45153 * 180.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5939 1.9853 1.3948 5 1 3.4812 1.4731 -0.8032 6 1 1.3891 2.6809 -0.5915 7 6 2.0073 -1.2137 -0.0057 8 1 3.0823 -1.2161 -0.1100 9 6 1.3085 -2.4324 0.1246 10 7 -0.0279 -2.4186 0.1307 11 6 -0.7133 -3.5361 0.2448 12 6 -0.0214 -4.7514 0.3727 13 6 -0.7542 -6.0293 0.5099 14 6 -0.0524 -7.2308 0.6310 15 6 -0.7417 -8.4179 0.7629 16 6 -2.1259 -8.4214 0.7657 17 6 -2.8724 -9.7232 0.9050 18 8 -1.9380 -10.7983 1.0178 19 6 -2.8274 -7.2351 0.6409 20 6 -4.3344 -7.2488 0.6445 21 9 -4.8129 -5.9416 0.5060 22 9 -4.7961 -8.0297 -0.4204 23 9 -4.7930 -7.7880 1.8513 24 6 -2.1504 -6.0400 0.5133 25 6 1.3826 -4.7249 0.3678 26 7 2.0003 -3.5696 0.2437 27 1 -0.4850 0.8401 0.0040 28 1 -1.7931 -3.5185 0.2446 29 1 1.0276 -7.2298 0.6252 30 1 -0.2003 -9.3473 0.8599 31 1 -3.4974 -9.6899 1.7974 32 1 -3.5001 -9.8777 0.0274 33 1 -2.3491 -11.6687 1.1105 34 1 -2.6991 -5.1149 0.4155 35 1 1.9477 -5.6402 0.4637 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244585065.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:30 Heat of formation + Delta-G solvation = -151.645565 kcal Electronic energy + Delta-G solvation = -26383.525379 eV Core-core repulsion = 21930.622363 eV Total energy + Delta-G solvation = -4452.903016 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.25916 -48.76386 -48.69603 -41.19651 -40.18853 -37.65274 -35.90930 -34.22541 -33.92165 -32.66871 -31.24642 -28.72651 -27.46811 -26.09435 -24.87377 -23.86016 -22.83509 -22.00840 -19.91702 -19.56458 -19.51225 -19.09916 -18.26507 -17.81196 -17.41555 -16.82058 -16.28413 -16.12258 -15.98368 -15.76470 -15.37998 -15.17112 -15.10859 -15.05099 -15.02845 -14.84588 -14.70486 -14.43492 -14.21777 -13.71958 -13.55607 -13.36234 -13.12050 -12.98510 -12.73543 -12.37308 -12.01675 -11.93180 -11.57175 -11.30683 -11.16627 -11.10348 -10.54195 -10.16005 -9.35327 -9.07214 -8.55232 -6.77855 -0.26544 0.09469 0.90658 1.03518 1.39050 1.51406 1.55173 1.58835 2.15811 2.47860 2.63923 2.79680 2.97260 3.17385 3.37719 3.75680 3.81880 3.84153 3.88279 4.00560 4.12070 4.26703 4.28089 4.33884 4.43747 4.48806 4.66962 4.88199 4.98270 5.02338 5.17628 5.24170 5.36586 5.64248 5.71690 5.85037 6.04781 6.40862 6.49336 6.88651 7.07663 8.10478 8.24349 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.003040 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.818655 B = 9208.572752 C =10299.185124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.732 5.732 2 C 0.020 3.980 3 Si 1.003 2.997 4 H -0.259 1.259 5 H -0.253 1.253 6 H -0.261 1.261 7 C -0.412 4.412 8 H 0.096 0.904 9 C 0.351 3.649 10 N -0.540 5.540 11 C 0.164 3.836 12 C -0.320 4.320 13 C 0.013 3.987 14 C -0.109 4.109 15 C -0.084 4.084 16 C -0.080 4.080 17 C 0.111 3.889 18 O -0.576 6.576 19 C -0.174 4.174 20 C 0.514 3.486 21 F -0.180 7.180 22 F -0.174 7.174 23 F -0.174 7.174 24 C -0.103 4.103 25 C 0.180 3.820 26 N -0.616 5.616 27 H 0.289 0.711 28 H 0.149 0.851 29 H 0.145 0.855 30 H 0.156 0.844 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.405 0.595 34 H 0.133 0.867 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.609 -15.317 1.773 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.206 4.206 3 Si 0.821 3.179 4 H -0.184 1.184 5 H -0.177 1.177 6 H -0.185 1.185 7 C -0.445 4.445 8 H 0.114 0.886 9 C 0.118 3.882 10 N -0.257 5.257 11 C -0.011 4.011 12 C -0.329 4.329 13 C 0.011 3.989 14 C -0.127 4.127 15 C -0.101 4.101 16 C -0.080 4.080 17 C 0.033 3.967 18 O -0.385 6.385 19 C -0.176 4.176 20 C 0.460 3.540 21 F -0.162 7.162 22 F -0.156 7.156 23 F -0.156 7.156 24 C -0.121 4.121 25 C 0.006 3.994 26 N -0.335 5.335 27 H 0.100 0.900 28 H 0.167 0.833 29 H 0.163 0.837 30 H 0.173 0.827 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.256 0.744 34 H 0.150 0.850 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.873 -13.673 1.600 15.387 hybrid contribution -1.046 -0.415 0.109 1.130 sum -7.918 -14.088 1.709 16.251 Atomic orbital electron populations 1.70169 1.09128 1.30414 1.25555 1.27200 0.95941 1.04945 0.92478 0.84904 0.78798 0.74188 0.79961 1.18394 1.17659 1.18491 1.19854 0.95806 0.89082 1.39784 0.88551 1.20363 0.86502 0.91908 0.89464 1.69316 1.08465 1.28076 1.19832 1.23484 1.00063 0.88246 0.89349 1.19885 0.95353 0.93957 1.23755 1.18551 0.91917 0.92178 0.96256 1.21628 1.01252 0.91079 0.98716 1.20999 0.92783 0.98568 0.97780 1.19639 0.95015 0.93094 1.00292 1.21033 0.90100 0.83999 1.01552 1.86370 1.36294 1.18924 1.96920 1.19519 0.90338 0.95610 1.12116 1.18221 0.88627 0.73423 0.73762 1.93170 1.89942 1.37484 1.95560 1.93186 1.90496 1.74925 1.56959 1.93188 1.90592 1.85999 1.45796 1.20958 0.94082 0.97037 1.00028 1.23315 0.91201 0.96143 0.88732 1.68683 1.41285 0.99425 1.24139 0.89952 0.83345 0.83736 0.82676 0.90779 0.90764 0.74384 0.84971 0.81197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.62 11.43 21.86 0.25 -37.37 16 2 C 0.02 0.96 5.49 85.33 0.47 1.43 16 3 Si 1.00 36.10 29.56 68.60 2.03 38.13 16 4 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 5 H -0.25 -8.81 7.11 99.48 0.71 -8.11 16 6 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 7 C -0.41 -22.29 9.35 23.43 0.22 -22.07 16 8 H 0.10 4.99 7.86 -2.91 -0.02 4.96 16 9 C 0.35 19.73 7.35 134.91 0.99 20.72 16 10 N -0.54 -29.78 7.86 -193.18 -1.52 -31.30 16 11 C 0.16 7.74 10.70 85.26 0.91 8.66 16 12 C -0.32 -13.50 5.94 -19.64 -0.12 -13.62 16 13 C 0.01 0.44 5.88 -20.02 -0.12 0.32 16 14 C -0.11 -3.10 9.45 22.54 0.21 -2.89 16 15 C -0.08 -2.12 9.36 22.23 0.21 -1.91 16 16 C -0.08 -2.00 5.85 -19.78 -0.12 -2.12 16 17 C 0.11 2.05 6.17 71.24 0.44 2.49 16 18 O -0.58 -9.23 12.12 -148.98 -1.81 -11.03 16 19 C -0.17 -4.84 5.37 -19.90 -0.11 -4.94 16 20 C 0.51 12.98 2.88 71.24 0.20 13.18 16 21 F -0.18 -4.96 15.96 44.97 0.72 -4.24 16 22 F -0.17 -4.11 15.74 44.97 0.71 -3.40 16 23 F -0.17 -4.11 15.75 44.97 0.71 -3.40 16 24 C -0.10 -3.28 8.83 22.54 0.20 -3.08 16 25 C 0.18 7.82 10.70 85.26 0.91 8.73 16 26 N -0.62 -32.02 10.34 -193.17 -2.00 -34.02 16 27 H 0.29 13.17 8.29 -92.71 -0.77 12.40 16 28 H 0.15 6.20 6.33 -2.91 -0.02 6.18 16 29 H 0.14 3.59 6.29 -2.91 -0.02 3.57 16 30 H 0.16 3.38 6.99 -2.91 -0.02 3.36 16 31 H 0.07 1.25 6.94 -2.39 -0.02 1.23 16 32 H 0.07 1.25 6.94 -2.39 -0.02 1.23 16 33 H 0.40 2.32 9.12 -74.05 -0.68 1.64 16 34 H 0.13 4.25 5.38 -2.91 -0.02 4.23 16 35 H 0.17 5.85 6.33 -2.91 -0.02 5.83 16 Total: -1.00 -65.51 313.88 3.93 -61.58 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.53 Total: 20.15 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 4.31 Total: 4.90 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -3.26 Total: -102.68 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -1.81 Total: -11.03 kcal Atomic # 9 Polarization: -13.17 SS G_CDS: 2.13 Total: -11.04 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -65.51 3.93 -61.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244585065.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.070 kcal (2) G-P(sol) polarization free energy of solvation -65.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds