Wall clock time and date at job start Tue Mar 31 2020 14:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30728 * 1 3 3 Si 1.86808 * 119.99621 * 2 1 4 4 H 1.48497 * 109.47049 * 239.99610 * 3 2 1 5 5 H 1.48497 * 109.46946 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46807 * 119.99635 * 3 2 1 7 7 C 1.40048 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99527 * 186.26876 * 7 2 1 9 9 C 1.41323 * 120.00216 * 6.26539 * 7 2 1 10 10 C 1.40862 * 120.15047 * 173.71018 * 9 7 2 11 11 N 1.31861 * 119.96426 * 179.68043 * 10 9 7 12 12 C 1.32203 * 120.27834 * 0.57338 * 11 10 9 13 13 C 1.39990 * 120.30325 * 359.44662 * 12 11 10 14 14 C 1.48298 * 119.98642 * 180.27156 * 13 12 11 15 15 C 1.39420 * 120.12494 * 179.97438 * 14 13 12 16 16 C 1.37982 * 119.87214 * 180.02562 * 15 14 13 17 17 C 1.38356 * 120.12578 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.87256 * 180.02562 * 17 16 15 19 19 O 1.42894 * 109.47171 * 0.02562 * 18 17 16 20 20 C 1.38319 * 120.25537 * 359.97438 * 17 16 15 21 21 C 1.50696 * 119.93810 * 180.02562 * 20 17 16 22 22 F 1.39901 * 109.47401 * 180.02562 * 21 20 17 23 23 F 1.39896 * 109.47190 * 300.00374 * 21 20 17 24 24 F 1.39902 * 109.46978 * 60.00215 * 21 20 17 25 25 C 1.38022 * 120.12308 * 359.72482 * 20 17 16 26 26 N 1.32548 * 120.02865 * 0.25391 * 13 12 11 27 27 H 0.96994 * 120.00562 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.01694 * 359.95621 * 10 9 7 29 29 H 1.07998 * 119.84656 * 179.71902 * 12 11 10 30 30 H 1.08002 * 120.06165 * 359.97438 * 15 14 13 31 31 H 1.07990 * 119.93825 * 180.02562 * 16 15 14 32 32 H 1.09007 * 109.47035 * 119.99887 * 18 17 16 33 33 H 1.09005 * 109.46975 * 239.99739 * 18 17 16 34 34 H 0.96702 * 114.00267 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.06727 * 180.29758 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6179 0.0000 4 1 3.0950 1.6965 -1.2124 5 1 1.2761 2.7465 -0.0006 6 1 3.0949 1.6966 1.2126 7 6 2.0076 -1.2128 0.0005 8 1 3.0828 -1.2154 0.1027 9 6 1.3074 -2.4332 -0.1325 10 6 2.0149 -3.6440 -0.2654 11 7 1.3579 -4.7812 -0.3829 12 6 0.0359 -4.7898 -0.3880 13 6 -0.6788 -3.5932 -0.2571 14 6 -2.1617 -3.6116 -0.2577 15 6 -2.8763 -2.4217 -0.1270 16 6 -4.2559 -2.4450 -0.1277 17 6 -4.9301 -3.6462 -0.2573 18 6 -6.4370 -3.6649 -0.2579 19 8 -6.9300 -2.3315 -0.1135 20 6 -4.2264 -4.8299 -0.3873 21 6 -4.9679 -6.1341 -0.5285 22 9 -4.0492 -7.1829 -0.6435 23 9 -5.7701 -6.3389 0.5992 24 9 -5.7730 -6.0913 -1.6719 25 6 -2.8462 -4.8180 -0.3941 26 7 -0.0307 -2.4437 -0.1323 27 1 -0.4851 0.8399 -0.0004 28 1 3.0949 -3.6413 -0.2665 29 1 -0.4952 -5.7247 -0.4893 30 1 -2.3510 -1.4836 -0.0246 31 1 -4.8106 -1.5239 -0.0269 32 1 -6.7947 -4.0844 -1.1982 33 1 -6.7931 -4.2762 0.5714 34 1 -7.8949 -2.2676 -0.1053 35 1 -2.2976 -5.7422 -0.5005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244585723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:17 Heat of formation + Delta-G solvation = -136.135317 kcal Electronic energy + Delta-G solvation = -26777.992183 eV Core-core repulsion = 22325.761742 eV Total energy + Delta-G solvation = -4452.230441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.17843 -47.66693 -47.63657 -39.71986 -38.70826 -36.73472 -34.19393 -33.17983 -31.60285 -31.53392 -29.69831 -26.98772 -25.84391 -25.40482 -22.88535 -22.52284 -21.49591 -20.61212 -18.49105 -18.47179 -18.06632 -17.50114 -17.27739 -16.02730 -15.81848 -15.37867 -15.25616 -15.12054 -14.67081 -14.46831 -14.34995 -14.05571 -14.02281 -13.86026 -13.77262 -13.50792 -13.34563 -13.17935 -12.45977 -12.34084 -12.22355 -11.75237 -11.52811 -11.42608 -11.10578 -10.90427 -10.74227 -10.49088 -10.43047 -9.95742 -9.66993 -9.54332 -8.90006 -8.59210 -7.60250 -7.56282 -6.67072 -4.82256 1.03623 1.36403 2.48237 2.69328 2.85773 2.96040 2.97473 3.09070 3.73741 3.75661 3.85983 4.00038 4.06836 4.45253 4.58233 4.76922 5.07825 5.09523 5.19246 5.26233 5.56995 5.64622 5.68252 5.81825 5.92769 6.09820 6.20817 6.23428 6.48442 6.57507 6.79706 6.83497 6.94468 7.09830 7.14203 7.43373 7.49594 7.90306 8.26725 8.51496 9.08705 9.64270 9.99871 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.003821 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.442256 B = 7325.947918 C = 8840.702971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.068 3.932 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.410 4.410 8 H 0.092 0.908 9 C 0.208 3.792 10 C -0.056 4.056 11 N -0.428 5.428 12 C -0.106 4.106 13 C 0.132 3.868 14 C -0.015 4.015 15 C -0.048 4.048 16 C -0.107 4.107 17 C -0.054 4.054 18 C 0.104 3.896 19 O -0.563 6.563 20 C -0.193 4.193 21 C 0.511 3.489 22 F -0.175 7.175 23 F -0.180 7.180 24 F -0.180 7.180 25 C -0.062 4.062 26 N -0.441 5.441 27 H 0.279 0.721 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.161 0.839 31 H 0.140 0.860 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.382 0.618 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.693 -3.432 -0.401 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.159 4.159 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.442 4.442 8 H 0.110 0.890 9 C 0.081 3.919 10 C -0.226 4.226 11 N -0.139 5.139 12 C -0.264 4.264 13 C -0.015 4.015 14 C -0.017 4.017 15 C -0.066 4.066 16 C -0.124 4.124 17 C -0.054 4.054 18 C 0.027 3.973 19 O -0.368 6.368 20 C -0.194 4.194 21 C 0.457 3.543 22 F -0.156 7.156 23 F -0.161 7.161 24 F -0.162 7.162 25 C -0.081 4.081 26 N -0.159 5.159 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.178 0.822 31 H 0.158 0.842 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.229 0.771 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.262 -3.191 -0.378 12.676 hybrid contribution -0.340 0.244 -0.069 0.424 sum -12.602 -2.947 -0.446 12.950 Atomic orbital electron populations 1.69998 1.07490 1.28700 1.27144 1.26118 0.95002 1.01488 0.93288 0.86248 0.80080 0.79681 0.80157 1.18685 1.20002 1.18687 1.19627 0.95087 0.89129 1.40320 0.88978 1.19346 0.88597 0.93499 0.90428 1.23273 0.99430 0.89289 1.10654 1.67692 1.08686 1.30034 1.07534 1.22507 0.90764 0.96943 1.16198 1.20498 0.91986 0.92007 0.96994 1.18687 0.92027 0.92277 0.98710 1.22001 0.93091 1.00088 0.91453 1.20975 0.93946 0.97470 1.00050 1.19344 0.94215 0.92670 0.99199 1.21120 0.90804 0.84615 1.00765 1.86462 1.26515 1.26890 1.96961 1.19374 0.94653 0.90905 1.14466 1.18335 0.77210 0.85209 0.73587 1.93170 1.66259 1.60439 1.95760 1.93174 1.74996 1.95710 1.52269 1.93176 1.74834 1.96682 1.51463 1.20995 0.91428 0.99216 0.96493 1.69478 1.08219 1.22947 1.15208 0.90996 0.84662 0.85383 0.82168 0.84183 0.91600 0.91594 0.77058 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.06 11.51 55.55 0.64 -16.43 16 2 C 0.07 1.57 5.49 -17.34 -0.10 1.47 16 3 Si 0.91 17.06 29.56 -169.99 -5.03 12.04 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.41 -10.06 9.15 -37.73 -0.35 -10.40 16 8 H 0.09 2.07 7.86 -52.48 -0.41 1.65 16 9 C 0.21 5.37 6.54 -84.84 -0.56 4.81 16 10 C -0.06 -1.36 10.98 -16.55 -0.18 -1.54 16 11 N -0.43 -10.39 10.47 -12.06 -0.13 -10.51 16 12 C -0.11 -2.43 10.62 -16.74 -0.18 -2.60 16 13 C 0.13 3.09 6.74 -82.76 -0.56 2.53 16 14 C -0.02 -0.31 5.88 -104.90 -0.62 -0.92 16 15 C -0.05 -0.90 9.58 -39.24 -0.38 -1.28 16 16 C -0.11 -1.73 9.36 -39.63 -0.37 -2.10 16 17 C -0.05 -0.80 5.85 -104.55 -0.61 -1.41 16 18 C 0.10 1.21 6.17 36.00 0.22 1.43 16 19 O -0.56 -6.06 12.12 -35.23 -0.43 -6.49 16 20 C -0.19 -2.95 5.37 -104.67 -0.56 -3.51 16 21 C 0.51 6.95 2.88 36.00 0.10 7.05 16 22 F -0.17 -2.45 15.97 2.25 0.04 -2.41 16 23 F -0.18 -2.33 15.75 2.25 0.04 -2.30 16 24 F -0.18 -2.33 15.75 2.25 0.04 -2.30 16 25 C -0.06 -1.06 8.81 -39.24 -0.35 -1.41 16 26 N -0.44 -11.33 7.17 -7.51 -0.05 -11.39 16 27 H 0.28 6.03 8.29 -40.82 -0.34 5.69 16 28 H 0.14 2.95 8.06 -52.48 -0.42 2.53 16 29 H 0.13 2.56 6.19 -52.49 -0.32 2.23 16 30 H 0.16 3.34 7.55 -52.49 -0.40 2.94 16 31 H 0.14 2.11 6.99 -52.49 -0.37 1.74 16 32 H 0.07 0.70 6.94 -51.93 -0.36 0.34 16 33 H 0.07 0.70 6.95 -51.93 -0.36 0.34 16 34 H 0.38 2.10 9.12 45.56 0.42 2.52 16 35 H 0.14 2.26 5.28 -52.48 -0.28 1.98 16 LS Contribution 316.25 15.07 4.77 4.77 Total: -1.00 -28.25 316.25 -6.23 -34.48 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -1.64 Total: 8.41 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -4.47 Total: -7.88 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.46 Total: -38.33 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.43 Total: -6.49 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.11 Total: -7.00 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.25 -6.23 -34.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244585723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.653 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds