Wall clock time and date at job start Tue Mar 31 2020 14:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48501 * 109.47205 * 264.70641 * 3 2 1 5 5 H 1.48501 * 109.47257 * 24.70626 * 3 2 1 6 6 H 1.48494 * 109.47513 * 144.70733 * 3 2 1 7 7 C 1.40178 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99913 * 350.73666 * 7 2 1 9 9 C 1.40801 * 119.99926 * 170.73725 * 7 2 1 10 10 N 1.33978 * 120.28758 * 342.67152 * 9 7 2 11 11 C 1.31597 * 119.90094 * 180.02562 * 10 9 7 12 12 C 1.39201 * 120.50243 * 359.97438 * 11 10 9 13 13 N 1.31999 * 120.58885 * 359.97438 * 12 11 10 14 14 C 1.32856 * 120.08070 * 0.02562 * 13 12 11 15 15 C 1.47792 * 120.24871 * 179.97438 * 14 13 12 16 16 C 1.39718 * 120.14735 * 135.92814 * 15 14 13 17 17 C 1.37896 * 119.83922 * 179.97438 * 16 15 14 18 18 C 1.38426 * 120.15613 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.84444 * 180.02562 * 18 17 16 20 20 O 1.42898 * 109.47121 * 0.02562 * 19 18 17 21 21 C 1.38379 * 120.31098 * 0.02562 * 18 17 16 22 22 C 1.50702 * 119.92652 * 180.02562 * 21 18 17 23 23 F 1.39903 * 109.47297 * 180.02562 * 22 21 18 24 24 F 1.39902 * 109.46948 * 300.00451 * 22 21 18 25 25 F 1.39907 * 109.46907 * 60.00113 * 22 21 18 26 26 C 1.37933 * 120.15112 * 359.70318 * 21 18 17 27 27 H 0.97000 * 120.00443 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.74610 * 180.27423 * 11 10 9 29 29 H 1.08002 * 119.70426 * 180.02562 * 12 11 10 30 30 H 1.07993 * 120.08364 * 359.94975 * 16 15 14 31 31 H 1.08001 * 119.91893 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.47216 * 119.99831 * 19 18 17 33 33 H 1.09000 * 109.47286 * 239.99696 * 19 18 17 34 34 H 0.96705 * 113.99881 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.08115 * 180.27979 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.6002 1.9818 -1.3941 5 1 1.3868 2.6824 0.5852 6 1 3.4779 1.4751 0.8088 7 6 2.0077 -1.2140 0.0005 8 1 1.4783 -2.1430 0.1515 9 6 3.4019 -1.2220 -0.1957 10 7 4.0167 -0.1529 -0.7194 11 6 5.3202 -0.1688 -0.9000 12 6 6.0683 -1.2894 -0.5504 13 7 5.4829 -2.3529 -0.0321 14 6 4.1684 -2.3621 0.1603 15 6 3.5090 -3.5511 0.7399 16 6 2.5383 -3.4007 1.7334 17 6 1.9267 -4.5144 2.2693 18 6 2.2722 -5.7790 1.8248 19 6 1.5990 -6.9913 2.4150 20 8 0.6528 -6.5772 3.4026 21 6 3.2328 -5.9353 0.8411 22 6 3.6018 -7.3161 0.3631 23 9 4.5869 -7.2196 -0.6255 24 9 4.0918 -8.0660 1.4377 25 9 2.4693 -7.9445 -0.1660 26 6 3.8485 -4.8298 0.2922 27 1 -0.4851 0.8400 0.0004 28 1 5.8138 0.6960 -1.3182 29 1 7.1374 -1.2884 -0.7038 30 1 2.2678 -2.4147 2.0812 31 1 1.1759 -4.3996 3.0371 32 1 1.0840 -7.5407 1.6268 33 1 2.3483 -7.6345 2.8762 34 1 0.1803 -7.3075 3.8252 35 1 4.5949 -4.9529 -0.4787 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244586697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:20 Heat of formation + Delta-G solvation = -146.530214 kcal Electronic energy + Delta-G solvation = -27188.184778 eV Core-core repulsion = 22735.503580 eV Total energy + Delta-G solvation = -4452.681198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.06851 -47.55737 -47.52853 -39.84776 -38.82901 -36.62169 -34.35608 -33.28601 -32.33652 -31.24126 -29.98902 -27.02604 -25.96706 -25.43352 -22.99263 -22.16102 -21.70702 -20.70228 -18.38346 -18.31864 -18.11757 -17.91142 -17.19355 -16.36025 -15.76669 -15.56767 -15.25494 -15.08460 -14.66990 -14.24281 -14.17035 -14.05958 -13.92742 -13.91594 -13.66741 -13.50859 -13.35316 -13.02918 -12.79352 -12.31718 -12.29368 -11.96198 -11.79873 -11.45459 -11.20180 -10.92890 -10.77779 -10.57392 -10.30294 -9.97471 -9.64445 -9.39100 -8.74792 -8.68232 -7.95667 -7.65106 -7.23580 -5.02823 1.20941 1.55444 2.15930 2.49082 2.81700 3.22150 3.29083 3.35343 3.86462 3.89581 4.08922 4.12828 4.19463 4.31124 4.58737 4.89628 5.13612 5.17519 5.21988 5.34994 5.38456 5.54473 5.73245 5.76663 5.92345 5.99809 6.11549 6.28476 6.30889 6.51828 6.59545 6.73928 6.81306 7.07382 7.20145 7.32597 7.54450 7.76773 8.04889 8.15971 8.71842 9.17270 9.64699 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.004553 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.831295 B = 6148.578614 C = 7389.624207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.080 3.920 3 Si 0.992 3.008 4 H -0.269 1.269 5 H -0.320 1.320 6 H -0.266 1.266 7 C -0.382 4.382 8 H 0.112 0.888 9 C 0.205 3.795 10 N -0.535 5.535 11 C 0.113 3.887 12 C -0.111 4.111 13 N -0.401 5.401 14 C -0.011 4.011 15 C 0.020 3.980 16 C -0.063 4.063 17 C -0.100 4.100 18 C -0.062 4.062 19 C 0.106 3.894 20 O -0.563 6.563 21 C -0.189 4.189 22 C 0.510 3.490 23 F -0.176 7.176 24 F -0.181 7.181 25 F -0.181 7.181 26 C -0.060 4.060 27 H 0.296 0.704 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.381 0.619 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 -9.828 3.689 10.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.147 4.147 3 Si 0.824 3.176 4 H -0.195 1.195 5 H -0.251 1.251 6 H -0.192 1.192 7 C -0.411 4.411 8 H 0.130 0.870 9 C 0.082 3.918 10 N -0.256 5.256 11 C -0.055 4.055 12 C -0.271 4.271 13 N -0.112 5.112 14 C -0.159 4.159 15 C 0.019 3.981 16 C -0.082 4.082 17 C -0.118 4.118 18 C -0.063 4.063 19 C 0.029 3.971 20 O -0.368 6.368 21 C -0.191 4.191 22 C 0.456 3.544 23 F -0.157 7.157 24 F -0.163 7.163 25 F -0.162 7.162 26 C -0.079 4.079 27 H 0.106 0.894 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.228 0.772 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.761 -9.227 3.480 10.017 hybrid contribution 0.249 -0.082 -0.209 0.335 sum 2.010 -9.308 3.271 10.069 Atomic orbital electron populations 1.69572 1.08648 1.31884 1.29191 1.26510 0.95024 1.03724 0.89404 0.84702 0.77162 0.75492 0.80256 1.19475 1.25124 1.19179 1.19739 0.89242 0.96381 1.35780 0.87015 1.19174 0.94446 0.87769 0.90369 1.67732 1.09934 1.27954 1.19936 1.23242 0.90970 0.97509 0.93793 1.22525 0.99762 0.92574 1.12231 1.67722 1.10243 1.26401 1.06862 1.19860 0.89693 0.95779 1.10557 1.18236 0.94853 0.90696 0.94344 1.21762 0.93333 0.99808 0.93251 1.20834 1.00171 0.90357 1.00429 1.19273 0.95675 0.95648 0.95692 1.21096 0.91348 0.93667 0.91005 1.86469 1.56790 1.37328 1.56199 1.19400 1.04604 0.91123 1.03964 1.18388 0.74377 0.86633 0.75016 1.93165 1.63142 1.96331 1.63094 1.93166 1.88222 1.78959 1.55929 1.93175 1.51584 1.84480 1.86967 1.20984 0.97924 0.90476 0.98502 0.89364 0.84353 0.84425 0.83793 0.84244 0.91742 0.91806 0.77197 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.72 13.92 55.56 0.77 -17.94 16 2 C 0.08 1.94 5.52 -17.31 -0.10 1.84 16 3 Si 0.99 22.11 25.45 -169.99 -4.33 17.79 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.32 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.17 6.69 56.52 0.38 -5.80 16 7 C -0.38 -9.42 7.77 -37.89 -0.29 -9.72 16 8 H 0.11 2.80 5.99 -52.49 -0.31 2.48 16 9 C 0.21 5.00 6.14 -84.55 -0.52 4.48 16 10 N -0.53 -12.73 5.41 -10.72 -0.06 -12.78 16 11 C 0.11 2.32 11.22 -17.29 -0.19 2.13 16 12 C -0.11 -2.25 11.22 -17.12 -0.19 -2.44 16 13 N -0.40 -8.93 10.31 -8.97 -0.09 -9.03 16 14 C -0.01 -0.26 6.41 -82.11 -0.53 -0.78 16 15 C 0.02 0.42 5.25 -104.90 -0.55 -0.13 16 16 C -0.06 -1.21 7.63 -39.15 -0.30 -1.50 16 17 C -0.10 -1.71 9.36 -39.64 -0.37 -2.09 16 18 C -0.06 -1.00 5.85 -104.50 -0.61 -1.61 16 19 C 0.11 1.35 6.17 36.01 0.22 1.57 16 20 O -0.56 -6.64 12.12 -35.23 -0.43 -7.07 16 21 C -0.19 -3.17 5.37 -104.68 -0.56 -3.74 16 22 C 0.51 7.63 2.88 36.01 0.10 7.73 16 23 F -0.18 -2.72 15.96 2.25 0.04 -2.69 16 24 F -0.18 -2.54 15.74 2.25 0.04 -2.50 16 25 F -0.18 -2.59 15.75 2.25 0.04 -2.55 16 26 C -0.06 -1.12 9.06 -39.16 -0.35 -1.48 16 27 H 0.30 6.49 8.29 -40.82 -0.34 6.15 16 28 H 0.14 2.31 8.06 -52.48 -0.42 1.89 16 29 H 0.14 2.31 8.06 -52.49 -0.42 1.89 16 30 H 0.14 2.86 6.78 -52.49 -0.36 2.50 16 31 H 0.14 2.23 6.99 -52.49 -0.37 1.86 16 32 H 0.06 0.77 6.94 -51.93 -0.36 0.41 16 33 H 0.06 0.74 6.94 -51.93 -0.36 0.38 16 34 H 0.38 2.46 9.12 45.56 0.42 2.88 16 35 H 0.14 2.52 7.15 -52.49 -0.38 2.15 16 LS Contribution 309.75 15.07 4.67 4.67 Total: -1.00 -27.90 309.75 -5.32 -33.22 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -1.72 Total: 4.62 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -4.25 Total: -5.73 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.62 Total: -39.75 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.43 Total: -7.07 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 0.11 Total: -7.74 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.33 Total: 17.79 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.90 -5.32 -33.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244586697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.312 kcal (2) G-P(sol) polarization free energy of solvation -27.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds