Wall clock time and date at job start Tue Mar 31 2020 14:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48501 * 109.47205 * 264.70641 * 3 2 1 5 5 H 1.48501 * 109.47257 * 24.70626 * 3 2 1 6 6 H 1.48494 * 109.47513 * 144.70733 * 3 2 1 7 7 C 1.40178 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99913 * 350.73666 * 7 2 1 9 9 C 1.40801 * 119.99926 * 170.73725 * 7 2 1 10 10 N 1.33978 * 120.28758 * 342.67152 * 9 7 2 11 11 C 1.31597 * 119.90094 * 180.02562 * 10 9 7 12 12 C 1.39201 * 120.50243 * 359.97438 * 11 10 9 13 13 N 1.31999 * 120.58885 * 359.97438 * 12 11 10 14 14 C 1.32856 * 120.08070 * 0.02562 * 13 12 11 15 15 C 1.47792 * 120.24871 * 179.97438 * 14 13 12 16 16 C 1.39718 * 120.14735 * 135.92814 * 15 14 13 17 17 C 1.37896 * 119.83922 * 179.97438 * 16 15 14 18 18 C 1.38426 * 120.15613 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.84444 * 180.02562 * 18 17 16 20 20 O 1.42898 * 109.47121 * 0.02562 * 19 18 17 21 21 C 1.38379 * 120.31098 * 0.02562 * 18 17 16 22 22 C 1.50702 * 119.92652 * 180.02562 * 21 18 17 23 23 F 1.39903 * 109.47297 * 180.02562 * 22 21 18 24 24 F 1.39902 * 109.46948 * 300.00451 * 22 21 18 25 25 F 1.39907 * 109.46907 * 60.00113 * 22 21 18 26 26 C 1.37933 * 120.15112 * 359.70318 * 21 18 17 27 27 H 0.97000 * 120.00443 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.74610 * 180.27423 * 11 10 9 29 29 H 1.08002 * 119.70426 * 180.02562 * 12 11 10 30 30 H 1.07993 * 120.08364 * 359.94975 * 16 15 14 31 31 H 1.08001 * 119.91893 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.47216 * 119.99831 * 19 18 17 33 33 H 1.09000 * 109.47286 * 239.99696 * 19 18 17 34 34 H 0.96705 * 113.99881 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.08115 * 180.27979 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.6002 1.9818 -1.3941 5 1 1.3868 2.6824 0.5852 6 1 3.4779 1.4751 0.8088 7 6 2.0077 -1.2140 0.0005 8 1 1.4783 -2.1430 0.1515 9 6 3.4019 -1.2220 -0.1957 10 7 4.0167 -0.1529 -0.7194 11 6 5.3202 -0.1688 -0.9000 12 6 6.0683 -1.2894 -0.5504 13 7 5.4829 -2.3529 -0.0321 14 6 4.1684 -2.3621 0.1603 15 6 3.5090 -3.5511 0.7399 16 6 2.5383 -3.4007 1.7334 17 6 1.9267 -4.5144 2.2693 18 6 2.2722 -5.7790 1.8248 19 6 1.5990 -6.9913 2.4150 20 8 0.6528 -6.5772 3.4026 21 6 3.2328 -5.9353 0.8411 22 6 3.6018 -7.3161 0.3631 23 9 4.5869 -7.2196 -0.6255 24 9 4.0918 -8.0660 1.4377 25 9 2.4693 -7.9445 -0.1660 26 6 3.8485 -4.8298 0.2922 27 1 -0.4851 0.8400 0.0004 28 1 5.8138 0.6960 -1.3182 29 1 7.1374 -1.2884 -0.7038 30 1 2.2678 -2.4147 2.0812 31 1 1.1759 -4.3996 3.0371 32 1 1.0840 -7.5407 1.6268 33 1 2.3483 -7.6345 2.8762 34 1 0.1803 -7.3075 3.8252 35 1 4.5949 -4.9529 -0.4787 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244586697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:19 Heat of formation + Delta-G solvation = -164.328978 kcal Electronic energy + Delta-G solvation = -27188.956590 eV Core-core repulsion = 22735.503580 eV Total energy + Delta-G solvation = -4453.453010 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.25824 -48.76077 -48.68878 -41.46775 -40.27165 -37.64116 -36.12495 -34.86848 -33.96264 -32.65684 -31.51398 -28.54017 -27.43593 -26.79167 -24.51812 -23.78656 -23.13374 -22.10786 -19.88208 -19.56100 -19.50802 -19.28374 -18.29690 -17.97660 -17.29043 -17.11849 -16.56083 -16.28872 -16.01684 -15.78510 -15.43815 -15.37524 -15.17664 -15.06805 -14.98078 -14.86109 -14.84146 -14.67469 -14.24332 -13.74367 -13.71787 -13.52759 -13.29490 -13.06236 -12.89238 -12.50678 -12.26189 -11.99976 -11.76346 -11.46156 -11.24654 -11.13109 -10.25744 -10.15703 -9.63205 -9.26938 -9.02863 -6.82623 -0.24352 0.08557 0.50271 0.78752 1.42089 1.51275 1.57133 1.57688 2.30995 2.44032 2.55538 2.63029 2.96133 3.15286 3.36718 3.44406 3.50938 3.81266 3.92869 3.98335 4.13526 4.18661 4.33487 4.40960 4.42829 4.53927 4.65385 4.75454 4.79655 4.95460 5.07701 5.20435 5.33485 5.55754 5.65854 5.77163 5.92231 6.30010 6.37079 6.90593 6.98834 7.44461 7.90349 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.004553 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.831295 B = 6148.578614 C = 7389.624207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.056 3.944 3 Si 1.036 2.964 4 H -0.274 1.274 5 H -0.308 1.308 6 H -0.281 1.281 7 C -0.408 4.408 8 H 0.096 0.904 9 C 0.193 3.807 10 N -0.557 5.557 11 C 0.103 3.897 12 C -0.097 4.097 13 N -0.417 5.417 14 C -0.022 4.022 15 C -0.009 4.009 16 C -0.069 4.069 17 C -0.101 4.101 18 C -0.055 4.055 19 C 0.110 3.890 20 O -0.577 6.577 21 C -0.191 4.191 22 C 0.520 3.480 23 F -0.179 7.179 24 F -0.171 7.171 25 F -0.174 7.174 26 C -0.064 4.064 27 H 0.304 0.696 28 H 0.181 0.819 29 H 0.179 0.821 30 H 0.128 0.872 31 H 0.151 0.849 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.405 0.595 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.834 -10.952 3.976 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.167 4.167 3 Si 0.867 3.133 4 H -0.201 1.201 5 H -0.239 1.239 6 H -0.208 1.208 7 C -0.439 4.439 8 H 0.114 0.886 9 C 0.069 3.931 10 N -0.278 5.278 11 C -0.063 4.063 12 C -0.258 4.258 13 N -0.130 5.130 14 C -0.168 4.168 15 C -0.010 4.010 16 C -0.088 4.088 17 C -0.119 4.119 18 C -0.056 4.056 19 C 0.033 3.967 20 O -0.386 6.386 21 C -0.193 4.193 22 C 0.466 3.534 23 F -0.160 7.160 24 F -0.153 7.153 25 F -0.155 7.155 26 C -0.083 4.083 27 H 0.115 0.885 28 H 0.198 0.802 29 H 0.196 0.804 30 H 0.146 0.854 31 H 0.169 0.831 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.257 0.743 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.753 -10.379 3.784 11.385 hybrid contribution 0.106 0.153 -0.280 0.336 sum 2.859 -10.227 3.504 11.182 Atomic orbital electron populations 1.69564 1.09085 1.32771 1.30957 1.26924 0.95440 1.05066 0.89231 0.84070 0.75877 0.73953 0.79371 1.20078 1.23875 1.20793 1.19627 0.89748 0.96108 1.38402 0.88641 1.19338 0.94599 0.88664 0.90451 1.67712 1.11671 1.28077 1.20387 1.23949 0.90077 0.99138 0.93170 1.23292 1.01606 0.91536 1.09323 1.67833 1.09955 1.27448 1.07716 1.20150 0.90021 0.96269 1.10347 1.18277 0.96147 0.90853 0.95717 1.21678 0.93602 0.99945 0.93613 1.20958 1.00105 0.90284 1.00551 1.19722 0.94675 0.96644 0.94565 1.21092 0.92038 0.91842 0.91774 1.86412 1.56878 1.39213 1.56102 1.19538 1.04312 0.91648 1.03783 1.18031 0.74467 0.85808 0.75093 1.93164 1.63282 1.96323 1.63243 1.93187 1.88101 1.78527 1.55463 1.93192 1.51241 1.84183 1.86880 1.20951 0.98181 0.90502 0.98638 0.88501 0.80198 0.80438 0.85376 0.83105 0.90382 0.89962 0.74334 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.92 13.92 21.86 0.30 -39.61 16 2 C 0.06 2.82 5.52 85.34 0.47 3.29 16 3 Si 1.04 45.94 25.45 68.60 1.75 47.69 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.31 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -13.01 6.69 99.48 0.67 -12.34 16 7 C -0.41 -20.99 7.77 23.37 0.18 -20.81 16 8 H 0.10 5.07 5.99 -2.92 -0.02 5.06 16 9 C 0.19 9.62 6.14 40.35 0.25 9.86 16 10 N -0.56 -26.33 5.41 -187.84 -1.02 -27.34 16 11 C 0.10 4.03 11.22 84.96 0.95 4.98 16 12 C -0.10 -3.71 11.22 84.90 0.95 -2.76 16 13 N -0.42 -18.32 10.31 -182.30 -1.88 -20.20 16 14 C -0.02 -1.04 6.41 42.43 0.27 -0.76 16 15 C -0.01 -0.36 5.25 -20.05 -0.11 -0.47 16 16 C -0.07 -2.77 7.63 22.55 0.17 -2.59 16 17 C -0.10 -3.45 9.36 22.23 0.21 -3.25 16 18 C -0.06 -1.70 5.85 -19.79 -0.12 -1.82 16 19 C 0.11 2.48 6.17 71.24 0.44 2.92 16 20 O -0.58 -12.02 12.12 -148.98 -1.81 -13.82 16 21 C -0.19 -6.19 5.37 -19.90 -0.11 -6.30 16 22 C 0.52 14.50 2.88 71.24 0.20 14.70 16 23 F -0.18 -5.26 15.96 44.97 0.72 -4.54 16 24 F -0.17 -4.33 15.74 44.97 0.71 -3.62 16 25 F -0.17 -4.55 15.75 44.97 0.71 -3.84 16 26 C -0.06 -2.40 9.06 22.54 0.20 -2.19 16 27 H 0.30 13.62 8.29 -92.71 -0.77 12.85 16 28 H 0.18 5.38 8.06 -2.91 -0.02 5.35 16 29 H 0.18 5.25 8.06 -2.91 -0.02 5.23 16 30 H 0.13 5.43 6.78 -2.91 -0.02 5.41 16 31 H 0.15 4.74 6.99 -2.91 -0.02 4.72 16 32 H 0.08 1.60 6.94 -2.39 -0.02 1.58 16 33 H 0.08 1.60 6.94 -2.39 -0.02 1.58 16 34 H 0.41 3.92 9.12 -74.05 -0.68 3.25 16 35 H 0.13 4.96 7.15 -2.91 -0.02 4.94 16 Total: -1.00 -60.46 309.75 3.94 -56.52 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.48 Total: 13.96 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 3.98 Total: -5.19 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.59 Total: -87.15 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -1.81 Total: -13.82 kcal Atomic # 9 Polarization: -14.13 SS G_CDS: 2.13 Total: -12.00 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.75 Total: 47.69 kcal Total: -60.46 3.94 -56.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244586697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.812 kcal (2) G-P(sol) polarization free energy of solvation -60.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds