Wall clock time and date at job start Tue Mar 31 2020 13:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86807 * 119.99835 * 2 1 4 4 H 1.48501 * 109.46818 * 240.00212 * 3 2 1 5 5 H 1.48499 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46999 * 120.00202 * 3 2 1 7 7 C 1.38638 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00061 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.35664 * 117.00262 * 185.06334 * 9 7 2 11 11 C 1.38706 * 120.12106 * 354.40411 * 10 9 7 12 12 C 1.38339 * 120.02719 * 180.27715 * 11 10 9 13 13 F 1.35097 * 119.86557 * 179.72263 * 12 11 10 14 14 C 1.38679 * 120.27171 * 359.69694 * 12 11 10 15 15 C 1.37976 * 120.24638 * 0.02562 * 14 12 11 16 16 C 1.39311 * 119.96590 * 359.97438 * 15 14 12 17 17 C 1.48267 * 120.13057 * 179.97438 * 16 15 14 18 18 C 1.39425 * 120.12350 * 65.00817 * 17 16 15 19 19 C 1.37977 * 119.93934 * 179.97438 * 18 17 16 20 20 C 1.38362 * 120.19819 * 0.02562 * 19 18 17 21 21 C 1.50694 * 119.87182 * 179.97438 * 20 19 18 22 22 O 1.42901 * 109.47386 * 0.02562 * 21 20 19 23 23 C 1.38455 * 120.25370 * 0.25570 * 20 19 18 24 24 F 1.35107 * 119.97377 * 179.70014 * 23 20 19 25 25 C 1.38478 * 120.05609 * 359.45118 * 23 20 19 26 26 F 1.35101 * 120.09697 * 180.24985 * 25 23 20 27 27 H 0.97006 * 120.00190 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.98937 * 0.02562 * 11 10 9 29 29 H 1.08004 * 119.87846 * 180.02562 * 14 12 11 30 30 H 1.07999 * 120.01955 * 179.97438 * 15 14 12 31 31 H 1.07998 * 120.02884 * 359.94906 * 18 17 16 32 32 H 1.07995 * 119.90366 * 179.97438 * 19 18 17 33 33 H 1.09000 * 109.47484 * 240.00424 * 21 20 19 34 34 H 1.08992 * 109.47087 * 120.00164 * 21 20 19 35 35 H 0.96696 * 114.00240 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2126 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0088 -1.2006 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3348 -2.3682 -0.0005 10 6 2.0696 -3.5036 0.1056 11 6 3.4551 -3.4400 0.0911 12 6 4.2025 -4.5996 0.1937 13 9 5.5517 -4.5343 0.1736 14 6 3.5724 -5.8287 0.3177 15 6 2.1949 -5.9045 0.3391 16 6 1.4324 -4.7431 0.2364 17 6 -0.0481 -4.8204 0.2585 18 6 -0.7089 -5.2602 1.4047 19 6 -2.0868 -5.3302 1.4212 20 6 -2.8156 -4.9656 0.3030 21 6 -4.3202 -5.0454 0.3289 22 8 -4.7501 -5.5205 1.6063 23 6 -2.1675 -4.5332 -0.8415 24 9 -2.8845 -4.1844 -1.9322 25 6 -0.7853 -4.4532 -0.8676 26 9 -0.1523 -4.0266 -1.9824 27 1 -0.4851 0.8401 -0.0004 28 1 3.9506 -2.4852 -0.0044 29 1 4.1621 -6.7300 0.3977 30 1 1.7080 -6.8637 0.4353 31 1 -0.1427 -5.5463 2.2788 32 1 -2.5980 -5.6713 2.3093 33 1 -4.6612 -5.7304 -0.4474 34 1 -4.7396 -4.0555 0.1499 35 1 -5.7100 -5.5966 1.6949 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244721102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:03 Heat of formation + Delta-G solvation = -159.820007 kcal Electronic energy + Delta-G solvation = -27035.419250 eV Core-core repulsion = 22549.869012 eV Total energy + Delta-G solvation = -4485.550237 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.97831 -48.37611 -47.98175 -39.50733 -38.54331 -36.79152 -36.22987 -32.51863 -32.23836 -29.96056 -29.61670 -28.90240 -25.84030 -25.39780 -22.62644 -22.34003 -21.77763 -20.75907 -18.37187 -17.91498 -17.62509 -17.23548 -16.56341 -16.17372 -16.02856 -15.48662 -15.30028 -15.07088 -14.90903 -14.79716 -14.64117 -14.32374 -14.31156 -13.91170 -13.60745 -13.48348 -13.36373 -12.95401 -12.51662 -12.16342 -12.02146 -11.74155 -11.58948 -11.37565 -11.22551 -10.85060 -10.81870 -10.73598 -10.55532 -10.34505 -9.70379 -8.98298 -8.57005 -8.31385 -8.05765 -7.42356 -6.59734 -4.19130 1.15887 1.37894 1.82811 2.07477 3.07016 3.07950 3.10811 3.66174 3.84447 3.87215 4.17859 4.35983 4.71833 4.76696 4.88298 4.94951 5.05982 5.11045 5.19018 5.27284 5.36423 5.41152 5.47630 5.66068 5.98261 6.01259 6.10020 6.33795 6.37116 6.43925 6.52393 6.68277 6.76183 6.84522 6.94426 7.12364 7.20267 7.46426 7.53749 7.81828 8.83607 9.46124 10.55884 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009925 B = 0.005440 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.578813 B = 5145.840193 C = 7073.858319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.046 3.954 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.398 4.398 8 H 0.095 0.905 9 O -0.149 6.149 10 C 0.192 3.808 11 C -0.270 4.270 12 C 0.151 3.849 13 F -0.150 7.150 14 C -0.252 4.252 15 C -0.023 4.023 16 C -0.156 4.156 17 C -0.012 4.012 18 C -0.093 4.093 19 C -0.084 4.084 20 C -0.112 4.112 21 C 0.125 3.875 22 O -0.566 6.566 23 C 0.067 3.933 24 F -0.133 7.133 25 C 0.099 3.901 26 F -0.117 7.117 27 H 0.274 0.726 28 H 0.142 0.858 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.450 -10.268 2.155 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.473 4.473 8 H 0.112 0.888 9 O -0.050 6.050 10 C 0.135 3.865 11 C -0.291 4.291 12 C 0.132 3.868 13 F -0.128 7.128 14 C -0.271 4.271 15 C -0.042 4.042 16 C -0.158 4.158 17 C -0.013 4.013 18 C -0.112 4.112 19 C -0.102 4.102 20 C -0.113 4.113 21 C 0.048 3.952 22 O -0.372 6.372 23 C 0.047 3.953 24 F -0.111 7.111 25 C 0.079 3.921 26 F -0.095 7.095 27 H 0.084 0.916 28 H 0.160 0.840 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.226 -9.977 2.138 11.464 hybrid contribution 0.227 1.203 -0.649 1.386 sum -4.999 -8.774 1.488 10.207 Atomic orbital electron populations 1.70037 1.06014 1.28242 1.43714 1.25332 0.95870 0.98967 0.95910 0.85753 0.78798 0.79375 0.79438 1.19266 1.20083 1.19251 1.21362 0.91963 0.80526 1.53461 0.88768 1.83985 1.34053 1.11356 1.75586 1.18929 0.89034 0.87546 0.91006 1.20973 0.93951 0.98440 1.15694 1.17538 0.75861 0.94366 0.99072 1.91423 1.30211 1.97382 1.93825 1.20431 0.94822 0.95834 1.16051 1.20479 0.92274 0.96189 0.95227 1.17567 0.90218 0.91506 1.16472 1.18466 0.92767 0.98317 0.91767 1.21195 0.93916 0.99170 0.96876 1.20723 0.92983 0.98733 0.97734 1.19427 0.95370 1.03463 0.93053 1.20661 0.90462 0.98747 0.85328 1.86419 1.27743 1.89177 1.33845 1.17168 0.87761 1.05566 0.84805 1.91474 1.77536 1.90065 1.52053 1.17582 0.88158 1.01369 0.84996 1.91540 1.81851 1.87070 1.49062 0.91622 0.84035 0.85932 0.85566 0.84442 0.83816 0.92018 0.91753 0.76989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.18 13.67 55.48 0.76 -23.42 16 2 C 0.05 1.23 5.49 -17.52 -0.10 1.13 16 3 Si 0.94 20.11 29.55 -169.99 -5.02 15.08 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 7 C -0.40 -10.80 9.49 30.88 0.29 -10.51 16 8 H 0.09 2.37 5.21 -52.48 -0.27 2.10 16 9 O -0.15 -4.10 8.91 0.37 0.00 -4.09 16 10 C 0.19 4.52 6.44 -38.75 -0.25 4.27 16 11 C -0.27 -5.91 9.14 -39.37 -0.36 -6.26 16 12 C 0.15 2.92 7.29 -39.38 -0.29 2.63 16 13 F -0.15 -2.78 17.26 2.25 0.04 -2.74 16 14 C -0.25 -4.29 10.01 -39.51 -0.40 -4.69 16 15 C -0.02 -0.40 9.73 -39.28 -0.38 -0.78 16 16 C -0.16 -3.18 5.03 -104.72 -0.53 -3.70 16 17 C -0.01 -0.24 4.95 -104.86 -0.52 -0.76 16 18 C -0.09 -1.51 9.73 -39.24 -0.38 -1.90 16 19 C -0.08 -1.26 9.36 -39.63 -0.37 -1.63 16 20 C -0.11 -1.77 5.89 -104.50 -0.62 -2.38 16 21 C 0.13 1.51 7.00 36.00 0.25 1.76 16 22 O -0.57 -5.92 12.12 -35.23 -0.43 -6.35 16 23 C 0.07 1.25 7.24 -39.41 -0.29 0.96 16 24 F -0.13 -2.44 16.70 2.25 0.04 -2.41 16 25 C 0.10 2.07 6.95 -39.02 -0.27 1.80 16 26 F -0.12 -2.72 16.54 2.25 0.04 -2.68 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.14 3.10 5.64 -52.49 -0.30 2.81 16 29 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 30 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.14 1.88 6.99 -52.49 -0.37 1.51 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.38 2.00 9.12 45.56 0.42 2.41 16 LS Contribution 325.54 15.07 4.91 4.91 Total: -1.00 -31.44 325.54 -5.63 -37.08 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -1.77 Total: 4.66 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -4.20 Total: -20.05 kcal Atomic # 7 Polarization: -24.18 SS G_CDS: 0.76 Total: -23.42 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.42 Total: -10.44 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 0.11 Total: -7.83 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.44 -5.63 -37.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244721102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.743 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds