Wall clock time and date at job start Tue Mar 31 2020 13:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86807 * 119.99835 * 2 1 4 4 H 1.48501 * 109.46818 * 240.00212 * 3 2 1 5 5 H 1.48499 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46999 * 120.00202 * 3 2 1 7 7 C 1.38638 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00061 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.35664 * 117.00262 * 185.06334 * 9 7 2 11 11 C 1.38706 * 120.12106 * 354.40411 * 10 9 7 12 12 C 1.38339 * 120.02719 * 180.27715 * 11 10 9 13 13 F 1.35097 * 119.86557 * 179.72263 * 12 11 10 14 14 C 1.38679 * 120.27171 * 359.69694 * 12 11 10 15 15 C 1.37976 * 120.24638 * 0.02562 * 14 12 11 16 16 C 1.39311 * 119.96590 * 359.97438 * 15 14 12 17 17 C 1.48267 * 120.13057 * 179.97438 * 16 15 14 18 18 C 1.39425 * 120.12350 * 65.00817 * 17 16 15 19 19 C 1.37977 * 119.93934 * 179.97438 * 18 17 16 20 20 C 1.38362 * 120.19819 * 0.02562 * 19 18 17 21 21 C 1.50694 * 119.87182 * 179.97438 * 20 19 18 22 22 O 1.42901 * 109.47386 * 0.02562 * 21 20 19 23 23 C 1.38455 * 120.25370 * 0.25570 * 20 19 18 24 24 F 1.35107 * 119.97377 * 179.70014 * 23 20 19 25 25 C 1.38478 * 120.05609 * 359.45118 * 23 20 19 26 26 F 1.35101 * 120.09697 * 180.24985 * 25 23 20 27 27 H 0.97006 * 120.00190 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.98937 * 0.02562 * 11 10 9 29 29 H 1.08004 * 119.87846 * 180.02562 * 14 12 11 30 30 H 1.07999 * 120.01955 * 179.97438 * 15 14 12 31 31 H 1.07998 * 120.02884 * 359.94906 * 18 17 16 32 32 H 1.07995 * 119.90366 * 179.97438 * 19 18 17 33 33 H 1.09000 * 109.47484 * 240.00424 * 21 20 19 34 34 H 1.08992 * 109.47087 * 120.00164 * 21 20 19 35 35 H 0.96696 * 114.00240 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2126 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0088 -1.2006 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3348 -2.3682 -0.0005 10 6 2.0696 -3.5036 0.1056 11 6 3.4551 -3.4400 0.0911 12 6 4.2025 -4.5996 0.1937 13 9 5.5517 -4.5343 0.1736 14 6 3.5724 -5.8287 0.3177 15 6 2.1949 -5.9045 0.3391 16 6 1.4324 -4.7431 0.2364 17 6 -0.0481 -4.8204 0.2585 18 6 -0.7089 -5.2602 1.4047 19 6 -2.0868 -5.3302 1.4212 20 6 -2.8156 -4.9656 0.3030 21 6 -4.3202 -5.0454 0.3289 22 8 -4.7501 -5.5205 1.6063 23 6 -2.1675 -4.5332 -0.8415 24 9 -2.8845 -4.1844 -1.9322 25 6 -0.7853 -4.4532 -0.8676 26 9 -0.1523 -4.0266 -1.9824 27 1 -0.4851 0.8401 -0.0004 28 1 3.9506 -2.4852 -0.0044 29 1 4.1621 -6.7300 0.3977 30 1 1.7080 -6.8637 0.4353 31 1 -0.1427 -5.5463 2.2788 32 1 -2.5980 -5.6713 2.3093 33 1 -4.6612 -5.7304 -0.4474 34 1 -4.7396 -4.0555 0.1499 35 1 -5.7100 -5.5966 1.6949 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244721102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:02 Heat of formation + Delta-G solvation = -179.982169 kcal Electronic energy + Delta-G solvation = -27036.293546 eV Core-core repulsion = 22549.869012 eV Total energy + Delta-G solvation = -4486.424534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.47901 -49.90677 -49.55637 -41.09090 -39.92624 -38.18631 -37.42446 -34.39133 -33.64022 -31.32606 -31.15186 -30.35820 -27.55426 -26.82666 -24.06008 -23.75450 -23.33445 -22.20160 -20.15429 -19.44744 -18.87041 -18.69084 -17.97232 -17.50879 -17.42792 -17.13752 -16.93470 -16.62025 -16.34650 -16.06295 -16.00728 -15.82454 -15.61566 -15.51202 -15.31185 -15.14763 -14.86537 -14.19925 -14.12547 -13.65377 -13.46234 -13.34092 -12.97789 -12.87188 -12.58168 -12.37899 -12.35545 -12.18886 -12.08484 -11.55024 -11.23330 -10.86756 -9.98163 -9.72339 -9.57446 -9.05713 -8.53937 -6.22670 -0.22884 -0.02366 0.30309 0.50376 1.31191 1.41161 1.46665 2.11079 2.30813 2.58934 2.72362 3.00533 3.16884 3.19119 3.36688 3.51226 3.54424 3.83687 3.94483 4.01818 4.04926 4.18019 4.32029 4.41596 4.46191 4.65678 4.81261 4.87128 5.00669 5.04481 5.09539 5.22464 5.22610 5.25441 5.35750 5.47824 5.78511 5.90255 5.98937 6.88924 6.91553 7.62248 8.66431 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009925 B = 0.005440 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.578813 B = 5145.840193 C = 7073.858319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.011 4.011 3 Si 1.013 2.987 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.421 4.421 8 H 0.099 0.901 9 O -0.197 6.197 10 C 0.161 3.839 11 C -0.288 4.288 12 C 0.143 3.857 13 F -0.144 7.144 14 C -0.220 4.220 15 C -0.013 4.013 16 C -0.157 4.157 17 C -0.036 4.036 18 C -0.084 4.084 19 C -0.074 4.074 20 C -0.106 4.106 21 C 0.130 3.870 22 O -0.574 6.574 23 C 0.049 3.951 24 F -0.138 7.138 25 C 0.060 3.940 26 F -0.145 7.145 27 H 0.274 0.726 28 H 0.128 0.872 29 H 0.167 0.833 30 H 0.174 0.826 31 H 0.167 0.833 32 H 0.174 0.826 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 -12.961 3.827 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.211 4.211 3 Si 0.832 3.168 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.497 4.497 8 H 0.117 0.883 9 O -0.101 6.101 10 C 0.108 3.892 11 C -0.308 4.308 12 C 0.124 3.876 13 F -0.123 7.123 14 C -0.239 4.239 15 C -0.030 4.030 16 C -0.158 4.158 17 C -0.036 4.036 18 C -0.102 4.102 19 C -0.092 4.092 20 C -0.107 4.107 21 C 0.052 3.948 22 O -0.383 6.383 23 C 0.029 3.971 24 F -0.117 7.117 25 C 0.040 3.960 26 F -0.124 7.124 27 H 0.083 0.917 28 H 0.146 0.854 29 H 0.185 0.815 30 H 0.191 0.809 31 H 0.184 0.816 32 H 0.191 0.809 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.157 -12.731 3.818 14.256 hybrid contribution 0.248 1.649 -1.101 1.998 sum -4.909 -11.081 2.718 12.421 Atomic orbital electron populations 1.70176 1.07847 1.29002 1.47067 1.26498 0.96770 1.02466 0.95345 0.84728 0.77562 0.74557 0.79925 1.18529 1.19345 1.17970 1.21764 0.92454 0.81416 1.54058 0.88332 1.83978 1.35030 1.12108 1.78966 1.19516 0.89888 0.87976 0.91835 1.21016 0.93840 0.99223 1.16702 1.17654 0.76097 0.94488 0.99348 1.91439 1.29666 1.97383 1.93768 1.20988 0.95159 0.96164 1.11562 1.21029 0.92192 0.96797 0.93004 1.18022 0.91366 0.91367 1.15087 1.18637 0.92491 0.99955 0.92567 1.21545 0.94715 0.97635 0.96334 1.21102 0.92572 0.97258 0.98219 1.19924 0.97809 1.01176 0.91838 1.20611 0.87761 0.99648 0.86776 1.86337 1.30301 1.88961 1.32725 1.17415 0.87213 1.06665 0.85806 1.91446 1.77421 1.90296 1.52540 1.18096 0.89434 1.03371 0.85133 1.91451 1.82525 1.87837 1.50547 0.91680 0.85435 0.81516 0.80900 0.81550 0.80882 0.89867 0.91496 0.74105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.84 13.67 21.61 0.30 -54.55 16 2 C -0.01 -0.62 5.49 84.83 0.47 -0.16 16 3 Si 1.01 42.94 29.55 68.60 2.03 44.97 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.42 -24.35 9.49 67.92 0.64 -23.71 16 8 H 0.10 5.31 5.21 -2.91 -0.02 5.29 16 9 O -0.20 -11.51 8.91 -21.60 -0.19 -11.71 16 10 C 0.16 7.88 6.44 22.81 0.15 8.02 16 11 C -0.29 -12.88 9.14 22.41 0.20 -12.67 16 12 C 0.14 5.32 7.29 22.40 0.16 5.48 16 13 F -0.14 -5.07 17.26 44.97 0.78 -4.29 16 14 C -0.22 -6.59 10.01 22.31 0.22 -6.37 16 15 C -0.01 -0.38 9.73 22.47 0.22 -0.16 16 16 C -0.16 -6.32 5.03 -19.93 -0.10 -6.42 16 17 C -0.04 -1.38 4.95 -20.02 -0.10 -1.48 16 18 C -0.08 -2.56 9.73 22.49 0.22 -2.34 16 19 C -0.07 -2.03 9.36 22.24 0.21 -1.82 16 20 C -0.11 -3.20 5.89 -19.78 -0.12 -3.32 16 21 C 0.13 2.79 7.00 71.23 0.50 3.28 16 22 O -0.57 -9.89 12.12 -148.98 -1.81 -11.70 16 23 C 0.05 1.86 7.24 22.38 0.16 2.02 16 24 F -0.14 -5.27 16.70 44.97 0.75 -4.52 16 25 C 0.06 2.59 6.95 22.63 0.16 2.74 16 26 F -0.14 -7.23 16.54 44.97 0.74 -6.49 16 27 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 28 H 0.13 5.93 5.64 -2.91 -0.02 5.91 16 29 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 31 H 0.17 3.97 8.06 -2.91 -0.02 3.94 16 32 H 0.17 3.78 6.99 -2.91 -0.02 3.76 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.41 2.70 9.12 -74.06 -0.68 2.02 16 Total: -1.00 -75.17 325.54 6.11 -69.07 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.51 Total: 16.11 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 3.00 Total: -36.89 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.30 Total: -54.55 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -2.00 Total: -23.41 kcal Atomic # 9 Polarization: -17.57 SS G_CDS: 2.27 Total: -15.30 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -75.17 6.11 -69.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244721102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.916 kcal (2) G-P(sol) polarization free energy of solvation -75.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds