Wall clock time and date at job start Tue Mar 31 2020 14:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86801 * 120.00033 * 2 1 4 4 H 1.48504 * 109.47283 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47377 * 120.00009 * 3 2 1 6 6 H 1.48501 * 109.47182 * 240.00173 * 3 2 1 7 7 C 1.38633 * 119.99962 * 179.72823 * 2 1 3 8 8 H 1.08000 * 120.00014 * 180.02562 * 7 2 1 9 9 O 1.34812 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.35723 * 116.99967 * 174.92936 * 9 7 2 11 11 C 1.39450 * 120.38300 * 5.18566 * 10 9 7 12 12 C 1.38189 * 118.46221 * 179.71294 * 11 10 9 13 13 C 1.39476 * 119.14415 * 0.60637 * 12 11 10 14 14 C 1.48203 * 119.65776 * 179.68246 * 13 12 11 15 15 C 1.39509 * 120.05284 * 359.69053 * 14 13 12 16 16 C 1.37783 * 119.95124 * 179.76896 * 15 14 13 17 17 C 1.39077 * 120.05250 * 0.51675 * 16 15 14 18 18 N 1.39485 * 119.95429 * 179.72289 * 17 16 15 19 19 C 1.39042 * 120.09914 * 359.73929 * 17 16 15 20 20 C 1.37833 * 120.04993 * 0.02562 * 19 17 16 21 21 C 1.50702 * 120.02138 * 179.97438 * 20 19 17 22 22 F 1.39895 * 109.47283 * 0.02562 * 21 20 19 23 23 F 1.39897 * 109.47139 * 120.02608 * 21 20 19 24 24 F 1.39903 * 109.46793 * 240.02344 * 21 20 19 25 25 N 1.32716 * 120.68505 * 359.65091 * 13 12 11 26 26 C 1.31682 * 121.67639 * 0.02806 * 25 13 12 27 27 H 0.97000 * 120.00004 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.76538 * 359.97438 * 11 10 9 29 29 H 1.08004 * 120.42457 * 180.25806 * 12 11 10 30 30 H 1.08000 * 120.01912 * 0.03280 * 15 14 13 31 31 H 1.08003 * 119.97833 * 180.23946 * 16 15 14 32 32 H 0.97002 * 120.00114 * 180.02562 * 18 17 16 33 33 H 0.97003 * 119.99569 * 0.02562 * 18 17 16 34 34 H 1.08004 * 119.97191 * 180.02562 * 19 17 16 35 35 H 1.08010 * 119.60199 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 1.2847 2.7465 -0.0006 5 1 3.1034 1.6965 1.2125 6 1 3.1034 1.6964 -1.2125 7 6 2.0088 -1.2006 0.0057 8 1 3.0888 -1.2006 0.0061 9 8 1.3347 -2.3681 0.0118 10 6 2.0698 -3.5045 -0.0898 11 6 3.4631 -3.4460 -0.0859 12 6 4.1721 -4.6279 -0.1853 13 6 3.4751 -5.8307 -0.2984 14 6 4.2242 -7.1044 -0.4128 15 6 5.6192 -7.0968 -0.4137 16 6 6.3135 -8.2826 -0.5154 17 6 5.6247 -9.4856 -0.6280 18 7 6.3297 -10.6842 -0.7366 19 6 4.2343 -9.4951 -0.6327 20 6 3.5356 -8.3118 -0.5263 21 6 2.0286 -8.3229 -0.5321 22 9 1.5724 -9.6398 -0.6537 23 9 1.5537 -7.7735 0.6636 24 9 1.5609 -7.5657 -1.6114 25 7 2.1481 -5.8466 -0.3039 26 6 1.4429 -4.7389 -0.2045 27 1 -0.4850 -0.8400 -0.0004 28 1 3.9760 -2.4992 -0.0028 29 1 5.2521 -4.6198 -0.1813 30 1 6.1545 -6.1625 -0.3305 31 1 7.3935 -8.2776 -0.5123 32 1 5.8499 -11.5236 -0.8155 33 1 7.2997 -10.6784 -0.7333 34 1 3.7015 -10.4306 -0.7198 35 1 0.3641 -4.7907 -0.2130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244748090.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:43 Heat of formation + Delta-G solvation = -89.496343 kcal Electronic energy + Delta-G solvation = -27030.908701 eV Core-core repulsion = 22580.700677 eV Total energy + Delta-G solvation = -4450.208023 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.49803 -47.10043 -46.76921 -40.04927 -39.16913 -37.37087 -34.86106 -32.56324 -32.11438 -31.17994 -30.48396 -27.60020 -25.90270 -25.01682 -23.44652 -22.63615 -21.64098 -21.01447 -18.73327 -18.32717 -17.83676 -17.76129 -17.28879 -16.73636 -16.28535 -15.79266 -15.65805 -14.53276 -14.38917 -14.13197 -14.06574 -13.90280 -13.87048 -13.82238 -13.52926 -13.49420 -13.26855 -13.21695 -13.01079 -12.57807 -12.40290 -12.31356 -12.03230 -11.38160 -11.06142 -11.03351 -10.75349 -10.67849 -10.39758 -9.93404 -9.20930 -9.10552 -8.95477 -8.79019 -8.14852 -7.06475 -6.97726 -4.23870 0.91880 1.17969 1.97704 2.30322 3.14742 3.17576 3.19223 3.35998 3.63395 3.63645 3.95623 4.24568 4.57115 4.59408 4.62640 4.88811 4.93933 5.02013 5.03361 5.08290 5.25412 5.34440 5.55870 5.68622 5.70687 5.81498 5.93606 6.06664 6.19862 6.39017 6.48889 6.57098 6.83018 6.91441 7.22352 7.27079 7.35607 7.49840 8.16770 8.60239 8.69486 9.33337 10.45473 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022124 B = 0.003378 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.316591 B = 8288.145498 C = 9373.619318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.014 3.986 3 Si 1.096 2.904 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.470 4.470 8 H 0.087 0.913 9 O -0.182 6.182 10 C 0.112 3.888 11 C -0.199 4.199 12 C -0.094 4.094 13 C 0.031 3.969 14 C -0.009 4.009 15 C -0.075 4.075 16 C -0.165 4.165 17 C 0.200 3.800 18 N -0.878 5.878 19 C -0.154 4.154 20 C -0.122 4.122 21 C 0.526 3.474 22 F -0.198 7.198 23 F -0.163 7.163 24 F -0.163 7.163 25 N -0.428 5.428 26 C 0.042 3.958 27 H 0.286 0.714 28 H 0.139 0.861 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.398 0.602 33 H 0.398 0.602 34 H 0.132 0.868 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.550 -17.023 -1.219 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.194 4.194 3 Si 0.919 3.081 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.546 4.546 8 H 0.105 0.895 9 O -0.083 6.083 10 C 0.055 3.945 11 C -0.225 4.225 12 C -0.114 4.114 13 C -0.102 4.102 14 C -0.012 4.012 15 C -0.094 4.094 16 C -0.188 4.188 17 C 0.096 3.904 18 N -0.417 5.417 19 C -0.177 4.177 20 C -0.124 4.124 21 C 0.471 3.529 22 F -0.180 7.180 23 F -0.144 7.144 24 F -0.144 7.144 25 N -0.137 5.137 26 C -0.122 4.122 27 H 0.096 0.904 28 H 0.157 0.843 29 H 0.140 0.860 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.226 0.774 33 H 0.226 0.774 34 H 0.150 0.850 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.568 -15.991 -1.264 19.777 hybrid contribution 0.775 -1.213 0.062 1.441 sum 12.343 -17.204 -1.202 21.207 Atomic orbital electron populations 1.70576 1.06634 1.32071 1.40373 1.26675 0.96773 1.01300 0.94611 0.83100 0.74587 0.73085 0.77288 1.19557 1.20502 1.20510 1.22319 0.93338 0.81999 1.56940 0.89534 1.83648 1.35576 1.12208 1.76907 1.20369 0.91022 0.88620 0.94509 1.21442 0.93775 0.98979 1.08267 1.21604 0.99725 0.91913 0.98198 1.18983 0.89567 0.91368 1.10325 1.18004 0.92420 0.90198 1.00602 1.20907 0.92229 0.98093 0.98178 1.20613 0.99624 0.90939 1.07583 1.17577 0.90636 0.86897 0.95307 1.42332 1.08770 1.05656 1.84978 1.20254 0.92341 0.97619 1.07446 1.19758 0.91556 0.94510 1.06619 1.17728 0.87962 0.72126 0.75066 1.93087 1.90964 1.37933 1.95991 1.93199 1.89718 1.85358 1.46146 1.93203 1.89941 1.75906 1.55351 1.67636 1.06893 1.29812 1.09379 1.21630 0.99599 0.85136 1.05865 0.90411 0.84329 0.85965 0.84784 0.85523 0.77397 0.77366 0.84974 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.83 13.70 55.48 0.76 -24.07 16 2 C 0.01 0.37 5.49 -17.52 -0.10 0.27 16 3 Si 1.10 22.45 29.92 -169.99 -5.09 17.36 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.47 -12.57 9.49 30.88 0.29 -12.28 16 8 H 0.09 2.14 5.25 -52.49 -0.28 1.87 16 9 O -0.18 -4.91 9.17 0.18 0.00 -4.91 16 10 C 0.11 2.64 6.67 -38.88 -0.26 2.38 16 11 C -0.20 -4.17 9.25 -39.15 -0.36 -4.53 16 12 C -0.09 -1.71 9.45 -39.14 -0.37 -2.08 16 13 C 0.03 0.59 6.54 -82.93 -0.54 0.05 16 14 C -0.01 -0.15 5.85 -104.87 -0.61 -0.76 16 15 C -0.07 -0.94 9.41 -39.27 -0.37 -1.31 16 16 C -0.17 -1.72 9.88 -39.44 -0.39 -2.11 16 17 C 0.20 2.09 6.75 -83.77 -0.57 1.52 16 18 N -0.88 -5.85 9.08 32.43 0.29 -5.56 16 19 C -0.15 -1.92 9.26 -39.43 -0.37 -2.28 16 20 C -0.12 -1.89 5.39 -104.31 -0.56 -2.46 16 21 C 0.53 8.98 2.78 36.01 0.10 9.08 16 22 F -0.20 -3.03 15.97 2.25 0.04 -2.99 16 23 F -0.16 -3.08 14.74 2.25 0.03 -3.04 16 24 F -0.16 -3.08 14.75 2.25 0.03 -3.05 16 25 N -0.43 -8.87 3.86 -9.62 -0.04 -8.90 16 26 C 0.04 0.92 11.14 -17.36 -0.19 0.73 16 27 H 0.29 8.36 7.97 -40.82 -0.33 8.03 16 28 H 0.14 2.82 5.75 -52.49 -0.30 2.52 16 29 H 0.12 1.74 6.17 -52.48 -0.32 1.42 16 30 H 0.13 1.44 6.16 -52.49 -0.32 1.11 16 31 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.40 2.05 8.84 -40.82 -0.36 1.69 16 33 H 0.40 1.82 8.84 -40.82 -0.36 1.46 16 34 H 0.13 1.43 7.15 -52.48 -0.38 1.05 16 35 H 0.15 3.10 8.06 -52.48 -0.42 2.68 16 LS Contribution 312.10 15.07 4.70 4.70 Total: -1.00 -31.11 312.10 -5.84 -36.95 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -2.29 Total: 7.29 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -4.30 Total: -13.78 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 1.02 Total: -38.53 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: 0.00 Total: -4.91 kcal Atomic # 9 Polarization: -9.19 SS G_CDS: 0.10 Total: -9.08 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.09 Total: 17.36 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.11 -5.84 -36.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244748090.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.543 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds