Wall clock time and date at job start Tue Mar 31 2020 14:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86801 * 120.00033 * 2 1 4 4 H 1.48504 * 109.47283 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47377 * 120.00009 * 3 2 1 6 6 H 1.48501 * 109.47182 * 240.00173 * 3 2 1 7 7 C 1.38633 * 119.99962 * 179.72823 * 2 1 3 8 8 H 1.08000 * 120.00014 * 180.02562 * 7 2 1 9 9 O 1.34812 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.35723 * 116.99967 * 174.92936 * 9 7 2 11 11 C 1.39450 * 120.38300 * 5.18566 * 10 9 7 12 12 C 1.38189 * 118.46221 * 179.71294 * 11 10 9 13 13 C 1.39476 * 119.14415 * 0.60637 * 12 11 10 14 14 C 1.48203 * 119.65776 * 179.68246 * 13 12 11 15 15 C 1.39509 * 120.05284 * 359.69053 * 14 13 12 16 16 C 1.37783 * 119.95124 * 179.76896 * 15 14 13 17 17 C 1.39077 * 120.05250 * 0.51675 * 16 15 14 18 18 N 1.39485 * 119.95429 * 179.72289 * 17 16 15 19 19 C 1.39042 * 120.09914 * 359.73929 * 17 16 15 20 20 C 1.37833 * 120.04993 * 0.02562 * 19 17 16 21 21 C 1.50702 * 120.02138 * 179.97438 * 20 19 17 22 22 F 1.39895 * 109.47283 * 0.02562 * 21 20 19 23 23 F 1.39897 * 109.47139 * 120.02608 * 21 20 19 24 24 F 1.39903 * 109.46793 * 240.02344 * 21 20 19 25 25 N 1.32716 * 120.68505 * 359.65091 * 13 12 11 26 26 C 1.31682 * 121.67639 * 0.02806 * 25 13 12 27 27 H 0.97000 * 120.00004 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.76538 * 359.97438 * 11 10 9 29 29 H 1.08004 * 120.42457 * 180.25806 * 12 11 10 30 30 H 1.08000 * 120.01912 * 0.03280 * 15 14 13 31 31 H 1.08003 * 119.97833 * 180.23946 * 16 15 14 32 32 H 0.97002 * 120.00114 * 180.02562 * 18 17 16 33 33 H 0.97003 * 119.99569 * 0.02562 * 18 17 16 34 34 H 1.08004 * 119.97191 * 180.02562 * 19 17 16 35 35 H 1.08010 * 119.60199 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 1.2847 2.7465 -0.0006 5 1 3.1034 1.6965 1.2125 6 1 3.1034 1.6964 -1.2125 7 6 2.0088 -1.2006 0.0057 8 1 3.0888 -1.2006 0.0061 9 8 1.3347 -2.3681 0.0118 10 6 2.0698 -3.5045 -0.0898 11 6 3.4631 -3.4460 -0.0859 12 6 4.1721 -4.6279 -0.1853 13 6 3.4751 -5.8307 -0.2984 14 6 4.2242 -7.1044 -0.4128 15 6 5.6192 -7.0968 -0.4137 16 6 6.3135 -8.2826 -0.5154 17 6 5.6247 -9.4856 -0.6280 18 7 6.3297 -10.6842 -0.7366 19 6 4.2343 -9.4951 -0.6327 20 6 3.5356 -8.3118 -0.5263 21 6 2.0286 -8.3229 -0.5321 22 9 1.5724 -9.6398 -0.6537 23 9 1.5537 -7.7735 0.6636 24 9 1.5609 -7.5657 -1.6114 25 7 2.1481 -5.8466 -0.3039 26 6 1.4429 -4.7389 -0.2045 27 1 -0.4850 -0.8400 -0.0004 28 1 3.9760 -2.4992 -0.0028 29 1 5.2521 -4.6198 -0.1813 30 1 6.1545 -6.1625 -0.3305 31 1 7.3935 -8.2776 -0.5123 32 1 5.8499 -11.5236 -0.8155 33 1 7.2997 -10.6784 -0.7333 34 1 3.7015 -10.4306 -0.7198 35 1 0.3641 -4.7907 -0.2130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244748090.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:42 Heat of formation + Delta-G solvation = -109.048985 kcal Electronic energy + Delta-G solvation = -27031.756567 eV Core-core repulsion = 22580.700677 eV Total energy + Delta-G solvation = -4451.055890 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.86525 -48.45033 -48.21797 -41.54123 -40.40985 -39.01425 -35.82422 -34.42568 -33.44716 -32.47600 -31.82592 -28.88678 -27.31757 -26.64662 -24.83834 -24.13563 -22.88116 -22.29244 -20.50108 -19.55654 -19.15740 -19.14934 -18.77985 -17.80698 -17.68020 -17.27395 -16.64374 -16.09960 -15.94555 -15.62503 -15.42646 -15.34198 -15.31366 -15.07973 -14.92883 -14.84616 -14.56708 -14.47903 -14.38147 -14.04542 -13.78742 -13.69366 -13.32207 -12.71182 -12.58727 -12.49421 -12.05951 -11.94025 -11.79949 -11.77857 -10.87459 -10.59812 -10.40598 -10.17534 -9.54548 -8.99711 -8.25167 -6.28898 -0.30570 0.18133 0.32795 0.90581 1.50622 1.63130 1.79980 1.91580 2.32265 2.53822 2.84707 2.92148 3.01620 3.08436 3.17430 3.41029 3.44712 3.71889 3.72681 3.94457 4.00904 4.13777 4.20748 4.40287 4.50474 4.55147 4.74646 4.88946 4.95485 5.12043 5.17073 5.27549 5.39169 5.53043 5.64522 5.73958 6.13734 6.51234 6.77146 6.98913 7.00023 7.49313 8.44552 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022124 B = 0.003378 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.316591 B = 8288.145498 C = 9373.619318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.040 4.040 3 Si 1.145 2.855 4 H -0.276 1.276 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.490 4.490 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.081 3.919 11 C -0.192 4.192 12 C -0.092 4.092 13 C 0.055 3.945 14 C -0.060 4.060 15 C -0.059 4.059 16 C -0.161 4.161 17 C 0.223 3.777 18 N -0.856 5.856 19 C -0.166 4.166 20 C -0.128 4.128 21 C 0.517 3.483 22 F -0.189 7.189 23 F -0.180 7.180 24 F -0.180 7.180 25 N -0.441 5.441 26 C 0.027 3.973 27 H 0.262 0.738 28 H 0.145 0.855 29 H 0.173 0.827 30 H 0.158 0.842 31 H 0.168 0.832 32 H 0.409 0.591 33 H 0.414 0.586 34 H 0.145 0.855 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.913 -19.849 -1.492 26.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.237 4.237 3 Si 0.960 3.040 4 H -0.201 1.201 5 H -0.181 1.181 6 H -0.182 1.182 7 C -0.565 4.565 8 H 0.117 0.883 9 O -0.139 6.139 10 C 0.027 3.973 11 C -0.218 4.218 12 C -0.111 4.111 13 C -0.080 4.080 14 C -0.063 4.063 15 C -0.079 4.079 16 C -0.183 4.183 17 C 0.115 3.885 18 N -0.396 5.396 19 C -0.189 4.189 20 C -0.131 4.131 21 C 0.463 3.537 22 F -0.171 7.171 23 F -0.161 7.161 24 F -0.161 7.161 25 N -0.150 5.150 26 C -0.134 4.134 27 H 0.071 0.929 28 H 0.163 0.837 29 H 0.191 0.809 30 H 0.175 0.825 31 H 0.185 0.815 32 H 0.239 0.761 33 H 0.245 0.755 34 H 0.163 0.837 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.969 -18.928 -1.542 25.467 hybrid contribution -0.541 -1.094 0.090 1.224 sum 16.428 -20.021 -1.452 25.939 Atomic orbital electron populations 1.70708 1.07933 1.30380 1.45445 1.28469 0.96801 1.04990 0.93457 0.82589 0.73802 0.68563 0.78997 1.20128 1.18106 1.18180 1.22691 0.94054 0.82494 1.57285 0.88278 1.83655 1.36609 1.12937 1.80659 1.20760 0.92486 0.88269 0.95775 1.21707 0.92779 1.00559 1.06799 1.22056 1.02111 0.90156 0.96807 1.19828 0.89154 0.93599 1.05463 1.18033 0.93919 0.88632 1.05719 1.21190 0.90496 1.00151 0.96047 1.21021 1.01548 0.89756 1.05973 1.17720 0.89982 0.88387 0.92367 1.42392 1.09758 1.04940 1.82497 1.20403 0.93516 0.96994 1.07974 1.19752 0.90036 0.95787 1.07495 1.18124 0.89438 0.72111 0.74049 1.93092 1.91080 1.37047 1.95877 1.93161 1.90133 1.85732 1.47057 1.93164 1.90354 1.76500 1.56080 1.67754 1.08209 1.28918 1.10162 1.21674 0.99868 0.85415 1.06397 0.92906 0.83713 0.80930 0.82474 0.81480 0.76142 0.75486 0.83694 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.02 13.70 21.61 0.30 -55.73 16 2 C -0.04 -2.22 5.49 84.83 0.47 -1.75 16 3 Si 1.15 46.08 29.92 68.60 2.05 48.14 16 4 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 6 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.49 -27.53 9.49 67.91 0.64 -26.89 16 8 H 0.10 5.04 5.25 -2.91 -0.02 5.02 16 9 O -0.23 -13.56 9.17 -22.26 -0.20 -13.76 16 10 C 0.08 3.99 6.67 22.73 0.15 4.14 16 11 C -0.19 -8.04 9.25 22.55 0.21 -7.83 16 12 C -0.09 -3.12 9.45 22.56 0.21 -2.91 16 13 C 0.06 2.03 6.54 41.96 0.27 2.31 16 14 C -0.06 -1.75 5.85 -20.03 -0.12 -1.87 16 15 C -0.06 -1.19 9.41 22.47 0.21 -0.98 16 16 C -0.16 -2.31 9.88 22.36 0.22 -2.09 16 17 C 0.22 3.41 6.75 38.32 0.26 3.67 16 18 N -0.86 -6.21 9.08 -51.31 -0.47 -6.67 16 19 C -0.17 -3.53 9.26 22.37 0.21 -3.32 16 20 C -0.13 -3.72 5.39 -19.66 -0.11 -3.82 16 21 C 0.52 17.58 2.78 71.24 0.20 17.78 16 22 F -0.19 -5.67 15.97 44.97 0.72 -4.95 16 23 F -0.18 -6.92 14.74 44.97 0.66 -6.26 16 24 F -0.18 -6.95 14.75 44.97 0.66 -6.29 16 25 N -0.44 -18.69 3.86 -184.35 -0.71 -19.40 16 26 C 0.03 1.27 11.14 84.88 0.95 2.22 16 27 H 0.26 16.86 7.97 -92.71 -0.74 16.12 16 28 H 0.15 5.82 5.75 -2.91 -0.02 5.80 16 29 H 0.17 4.02 6.17 -2.91 -0.02 4.01 16 30 H 0.16 2.34 6.16 -2.91 -0.02 2.32 16 31 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 32 H 0.41 1.92 8.84 -92.71 -0.82 1.10 16 33 H 0.41 1.01 8.84 -92.71 -0.82 0.19 16 34 H 0.15 2.63 7.15 -2.91 -0.02 2.61 16 35 H 0.14 6.63 8.06 -2.91 -0.02 6.60 16 Total: -1.00 -75.38 312.10 6.40 -68.98 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -0.39 Total: 17.26 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 3.78 Total: -21.33 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -0.88 Total: -81.80 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.20 Total: -13.76 kcal Atomic # 9 Polarization: -19.54 SS G_CDS: 2.04 Total: -17.49 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.05 Total: 48.14 kcal Total: -75.38 6.40 -68.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244748090.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.066 kcal (2) G-P(sol) polarization free energy of solvation -75.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds