Wall clock time and date at job start Tue Mar 31 2020 13:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38308 * 120.84976 * 2 1 4 4 C 1.38515 * 119.29680 * 180.29470 * 3 2 1 5 5 Cl 1.73590 * 119.47370 * 179.70098 * 4 3 2 6 6 N 1.32059 * 121.04572 * 359.68150 * 4 3 2 7 7 C 1.31677 * 121.85959 * 0.02562 * 6 4 3 8 8 C 1.39567 * 120.57944 * 0.02562 * 7 6 4 9 9 C 1.47926 * 120.54363 * 180.02562 * 8 7 6 10 10 N 1.31574 * 119.44156 * 233.05814 * 9 8 7 11 11 C 1.33647 * 121.74715 * 180.02562 * 10 9 8 12 12 C 1.40477 * 120.99709 * 180.02562 * 11 10 9 13 13 C 1.36241 * 119.71065 * 179.97438 * 12 11 10 14 14 C 1.39166 * 121.75800 * 359.97438 * 13 12 11 15 15 C 1.36131 * 121.46331 * 0.04677 * 14 13 12 16 16 C 1.40785 * 119.46757 * 359.95718 * 15 14 13 17 17 C 1.40020 * 121.40123 * 180.33049 * 16 15 14 18 18 C 1.40380 * 117.96315 * 180.23311 * 17 16 15 19 19 C 1.40838 * 120.41077 * 179.73981 * 18 17 16 20 20 H 1.08003 * 119.99582 * 206.98658 * 19 18 17 21 21 C 1.40087 * 120.00309 * 26.98303 * 19 18 17 22 22 N 1.30764 * 120.00183 * 200.43308 * 21 19 18 23 23 Si 1.86805 * 120.00028 * 20.43315 * 21 19 18 24 24 H 1.48497 * 109.46975 * 264.69042 * 23 21 19 25 25 H 1.48498 * 109.46841 * 24.68941 * 23 21 19 26 26 H 1.48503 * 109.47072 * 144.68829 * 23 21 19 27 27 H 1.09003 * 109.47165 * 265.44170 * 1 2 3 28 28 H 1.09009 * 109.46713 * 25.43557 * 1 2 3 29 29 H 1.09003 * 109.47381 * 145.43178 * 1 2 3 30 30 H 1.07996 * 120.34910 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.71015 * 179.97438 * 7 6 4 32 32 H 1.08007 * 120.14264 * 359.96068 * 12 11 10 33 33 H 1.08001 * 119.12205 * 180.02562 * 13 12 11 34 34 H 1.08002 * 119.27053 * 180.02562 * 14 13 12 35 35 H 1.07992 * 120.26522 * 179.97438 * 15 14 13 36 36 H 1.07998 * 121.01458 * 359.97438 * 17 16 15 37 37 H 0.97003 * 120.00152 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2162 1.1874 0.0000 4 6 3.6008 1.1499 -0.0062 5 17 4.4955 2.6374 -0.0141 6 7 4.2510 0.0004 -0.0058 7 6 3.6197 -1.1552 -0.0001 8 6 2.2249 -1.2022 0.0053 9 6 1.5165 -2.5008 0.0124 10 7 0.5988 -2.7419 -0.8992 11 6 -0.0695 -3.8987 -0.9354 12 6 -1.0460 -4.1396 -1.9162 13 6 -1.7111 -5.3286 -1.9290 14 6 -1.4510 -6.3236 -0.9915 15 6 -0.5178 -6.1534 -0.0151 16 6 0.2032 -4.9460 0.0510 17 6 1.1768 -4.7305 1.0339 18 6 1.8486 -3.4979 1.0359 19 6 2.8336 -3.2244 2.0047 20 1 3.0345 -2.2043 2.2974 21 6 3.5526 -4.2752 2.5887 22 7 4.1581 -4.0962 3.7338 23 14 3.6465 -5.9324 1.7317 24 1 2.5950 -6.8302 2.2736 25 1 3.4364 -5.7480 0.2733 26 1 4.9826 -6.5364 1.9669 27 1 -0.3634 -0.0817 1.0244 28 1 -0.3633 0.9281 -0.4414 29 1 -0.3634 -0.8462 -0.5831 30 1 1.6959 2.1338 -0.0004 31 1 4.1863 -2.0746 -0.0004 32 1 -1.2686 -3.3855 -2.6567 33 1 -2.4597 -5.5039 -2.6876 34 1 -2.0020 -7.2513 -1.0393 35 1 -0.3319 -6.9384 0.7029 36 1 1.4009 -5.4877 1.7706 37 1 4.6564 -4.8237 4.1380 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244914449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:32 Heat of formation + Delta-G solvation = 63.315753 kcal Electronic energy + Delta-G solvation = -23992.118187 eV Core-core repulsion = 20531.102499 eV Total energy + Delta-G solvation = -3461.015689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.13340 -39.07502 -36.61968 -36.11312 -34.48063 -33.54549 -32.36442 -31.50026 -29.92087 -28.72626 -27.55878 -25.72929 -24.09207 -22.53390 -21.82000 -21.27453 -20.88638 -18.43046 -16.90508 -16.69832 -16.33735 -16.27520 -15.83032 -14.90496 -14.49033 -14.24674 -13.79110 -13.63269 -13.43108 -13.31056 -12.93428 -12.84277 -12.66316 -12.48452 -12.24332 -12.06994 -11.53437 -11.50145 -11.37466 -11.22654 -11.10227 -10.86310 -10.76356 -10.46399 -10.20030 -9.80203 -9.33703 -9.26715 -9.23582 -8.73737 -8.39183 -7.71155 -7.45033 -7.43112 -4.87033 0.92208 1.43911 1.54093 1.77409 2.04857 2.81665 2.93343 2.97243 3.11446 3.51365 3.66573 3.99127 4.40544 4.68416 4.86879 5.03872 5.06506 5.24341 5.33700 5.37651 5.46862 5.59293 5.74375 5.83491 5.92104 5.94337 5.94970 6.02535 6.13813 6.24966 6.34839 6.40803 6.62227 6.70195 6.76505 6.83776 6.94778 7.03613 7.12745 7.30309 7.43337 7.56412 7.82422 8.04657 8.10196 8.23795 8.83657 9.53569 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.005139 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.532789 B = 5446.843112 C = 7414.261426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.011 4.011 3 C -0.163 4.163 4 C 0.169 3.831 5 Cl -0.050 7.050 6 N -0.485 5.485 7 C 0.156 3.844 8 C -0.048 4.048 9 C 0.131 3.869 10 N -0.440 5.440 11 C 0.016 3.984 12 C -0.051 4.051 13 C -0.183 4.183 14 C -0.101 4.101 15 C -0.148 4.148 16 C -0.014 4.014 17 C -0.261 4.261 18 C 0.059 3.941 19 C -0.398 4.398 20 H 0.102 0.898 21 C 0.082 3.918 22 N -0.765 5.765 23 Si 0.915 3.085 24 H -0.264 1.264 25 H -0.240 1.240 26 H -0.285 1.285 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.140 0.860 31 H 0.171 0.829 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.137 3.211 -4.845 7.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.019 4.019 3 C -0.184 4.184 4 C 0.005 3.995 5 Cl -0.021 7.021 6 N -0.195 5.195 7 C -0.002 4.002 8 C -0.051 4.051 9 C -0.028 4.028 10 N -0.147 5.147 11 C -0.104 4.104 12 C -0.070 4.070 13 C -0.203 4.203 14 C -0.119 4.119 15 C -0.167 4.167 16 C -0.016 4.016 17 C -0.285 4.285 18 C 0.053 3.947 19 C -0.424 4.424 20 H 0.120 0.880 21 C -0.143 4.143 22 N -0.385 5.385 23 Si 0.740 3.260 24 H -0.190 1.190 25 H -0.163 1.163 26 H -0.212 1.212 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.157 0.843 31 H 0.188 0.812 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.266 3.868 -5.286 7.319 hybrid contribution -0.399 -1.288 0.674 1.508 sum -3.665 2.580 -4.612 6.431 Atomic orbital electron populations 1.20974 0.89645 1.04085 1.03249 1.20351 0.97112 0.91037 0.93441 1.21504 0.92224 0.99291 1.05375 1.21550 0.88568 0.88276 1.01079 1.98364 1.77124 1.29943 1.96694 1.66966 1.41083 0.97334 1.14162 1.22873 0.90880 0.94494 0.91993 1.19393 0.93825 0.91928 1.00002 1.20570 0.96079 0.93051 0.93090 1.67325 1.05154 1.19907 1.22264 1.19227 1.01512 0.90800 0.98902 1.20513 0.93865 0.96431 0.96161 1.20298 1.03534 0.94927 1.01529 1.20542 0.97786 0.98305 0.95305 1.20849 0.98912 0.96900 1.00070 1.19488 0.94689 0.93312 0.94085 1.21027 1.03336 1.00116 1.04060 1.19187 0.93097 0.91155 0.91287 1.19636 1.13046 0.96777 1.12982 0.88005 1.26365 0.92980 1.01499 0.93447 1.69645 1.20831 1.35578 1.12460 0.86190 0.77203 0.79709 0.82896 1.19011 1.16337 1.21166 0.90872 0.91595 0.88341 0.84268 0.81165 0.86587 0.87385 0.87539 0.87036 0.86675 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 9.61 36.00 0.35 -1.50 16 2 C -0.01 -0.18 5.94 -103.93 -0.62 -0.80 16 3 C -0.16 -2.51 9.55 -39.45 -0.38 -2.89 16 4 C 0.17 2.84 7.27 -17.35 -0.13 2.72 16 5 Cl -0.05 -0.71 29.10 -51.86 -1.51 -2.22 16 6 N -0.48 -9.13 10.32 -10.01 -0.10 -9.23 16 7 C 0.16 3.01 9.33 -17.12 -0.16 2.85 16 8 C -0.05 -0.94 4.98 -104.76 -0.52 -1.46 16 9 C 0.13 2.78 5.96 -80.60 -0.48 2.30 16 10 N -0.44 -9.25 8.09 -4.83 -0.04 -9.28 16 11 C 0.02 0.34 6.74 -82.94 -0.56 -0.22 16 12 C -0.05 -0.91 9.98 -39.46 -0.39 -1.31 16 13 C -0.18 -2.94 9.90 -39.96 -0.40 -3.34 16 14 C -0.10 -1.65 9.91 -39.99 -0.40 -2.05 16 15 C -0.15 -2.77 9.80 -39.38 -0.39 -3.15 16 16 C -0.01 -0.29 5.87 -104.97 -0.62 -0.91 16 17 C -0.26 -5.86 7.10 -38.11 -0.27 -6.13 16 18 C 0.06 1.33 5.30 -104.69 -0.55 0.77 16 19 C -0.40 -9.27 7.88 -37.91 -0.30 -9.57 16 20 H 0.10 2.50 7.00 -52.48 -0.37 2.13 16 21 C 0.08 1.88 5.40 -17.31 -0.09 1.79 16 22 N -0.77 -17.83 13.92 55.56 0.77 -17.05 16 23 Si 0.91 18.67 24.53 -169.99 -4.17 14.50 16 24 H -0.26 -5.28 6.65 56.52 0.38 -4.90 16 25 H -0.24 -5.13 6.91 56.52 0.39 -4.74 16 26 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.07 0.79 8.08 -51.92 -0.42 0.37 16 29 H 0.10 1.65 5.77 -51.93 -0.30 1.35 16 30 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.17 3.25 7.58 -52.49 -0.40 2.86 16 32 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 33 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.12 2.55 4.57 -52.49 -0.24 2.31 16 37 H 0.30 6.19 8.29 -40.82 -0.34 5.85 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -24.93 326.85 -9.45 -34.39 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -3.43 Total: 6.88 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -5.90 Total: -22.90 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.63 Total: -35.57 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.17 Total: 14.50 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.51 Total: -2.22 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -24.93 -9.45 -34.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244914449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.705 kcal (2) G-P(sol) polarization free energy of solvation -24.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds