Wall clock time and date at job start Tue Mar 31 2020 13:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38308 * 120.84976 * 2 1 4 4 C 1.38515 * 119.29680 * 180.29470 * 3 2 1 5 5 Cl 1.73590 * 119.47370 * 179.70098 * 4 3 2 6 6 N 1.32059 * 121.04572 * 359.68150 * 4 3 2 7 7 C 1.31677 * 121.85959 * 0.02562 * 6 4 3 8 8 C 1.39567 * 120.57944 * 0.02562 * 7 6 4 9 9 C 1.47926 * 120.54363 * 180.02562 * 8 7 6 10 10 N 1.31574 * 119.44156 * 233.05814 * 9 8 7 11 11 C 1.33647 * 121.74715 * 180.02562 * 10 9 8 12 12 C 1.40477 * 120.99709 * 180.02562 * 11 10 9 13 13 C 1.36241 * 119.71065 * 179.97438 * 12 11 10 14 14 C 1.39166 * 121.75800 * 359.97438 * 13 12 11 15 15 C 1.36131 * 121.46331 * 0.04677 * 14 13 12 16 16 C 1.40785 * 119.46757 * 359.95718 * 15 14 13 17 17 C 1.40020 * 121.40123 * 180.33049 * 16 15 14 18 18 C 1.40380 * 117.96315 * 180.23311 * 17 16 15 19 19 C 1.40838 * 120.41077 * 179.73981 * 18 17 16 20 20 H 1.08003 * 119.99582 * 206.98658 * 19 18 17 21 21 C 1.40087 * 120.00309 * 26.98303 * 19 18 17 22 22 N 1.30764 * 120.00183 * 200.43308 * 21 19 18 23 23 Si 1.86805 * 120.00028 * 20.43315 * 21 19 18 24 24 H 1.48497 * 109.46975 * 264.69042 * 23 21 19 25 25 H 1.48498 * 109.46841 * 24.68941 * 23 21 19 26 26 H 1.48503 * 109.47072 * 144.68829 * 23 21 19 27 27 H 1.09003 * 109.47165 * 265.44170 * 1 2 3 28 28 H 1.09009 * 109.46713 * 25.43557 * 1 2 3 29 29 H 1.09003 * 109.47381 * 145.43178 * 1 2 3 30 30 H 1.07996 * 120.34910 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.71015 * 179.97438 * 7 6 4 32 32 H 1.08007 * 120.14264 * 359.96068 * 12 11 10 33 33 H 1.08001 * 119.12205 * 180.02562 * 13 12 11 34 34 H 1.08002 * 119.27053 * 180.02562 * 14 13 12 35 35 H 1.07992 * 120.26522 * 179.97438 * 15 14 13 36 36 H 1.07998 * 121.01458 * 359.97438 * 17 16 15 37 37 H 0.97003 * 120.00152 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2162 1.1874 0.0000 4 6 3.6008 1.1499 -0.0062 5 17 4.4955 2.6374 -0.0141 6 7 4.2510 0.0004 -0.0058 7 6 3.6197 -1.1552 -0.0001 8 6 2.2249 -1.2022 0.0053 9 6 1.5165 -2.5008 0.0124 10 7 0.5988 -2.7419 -0.8992 11 6 -0.0695 -3.8987 -0.9354 12 6 -1.0460 -4.1396 -1.9162 13 6 -1.7111 -5.3286 -1.9290 14 6 -1.4510 -6.3236 -0.9915 15 6 -0.5178 -6.1534 -0.0151 16 6 0.2032 -4.9460 0.0510 17 6 1.1768 -4.7305 1.0339 18 6 1.8486 -3.4979 1.0359 19 6 2.8336 -3.2244 2.0047 20 1 3.0345 -2.2043 2.2974 21 6 3.5526 -4.2752 2.5887 22 7 4.1581 -4.0962 3.7338 23 14 3.6465 -5.9324 1.7317 24 1 2.5950 -6.8302 2.2736 25 1 3.4364 -5.7480 0.2733 26 1 4.9826 -6.5364 1.9669 27 1 -0.3634 -0.0817 1.0244 28 1 -0.3633 0.9281 -0.4414 29 1 -0.3634 -0.8462 -0.5831 30 1 1.6959 2.1338 -0.0004 31 1 4.1863 -2.0746 -0.0004 32 1 -1.2686 -3.3855 -2.6567 33 1 -2.4597 -5.5039 -2.6876 34 1 -2.0020 -7.2513 -1.0393 35 1 -0.3319 -6.9384 0.7029 36 1 1.4009 -5.4877 1.7706 37 1 4.6564 -4.8237 4.1380 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244914449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:31 Heat of formation + Delta-G solvation = 51.820677 kcal Electronic energy + Delta-G solvation = -23992.616651 eV Core-core repulsion = 20531.102499 eV Total energy + Delta-G solvation = -3461.514153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.55947 -40.56430 -37.98447 -37.48385 -36.10304 -34.92981 -33.96598 -32.92484 -31.43714 -30.15469 -28.86296 -27.34135 -25.53914 -24.03503 -23.30772 -22.67708 -22.40410 -20.03437 -18.43842 -18.15395 -17.78399 -17.67986 -17.32107 -16.43024 -15.90329 -15.62398 -15.27662 -15.11861 -14.92736 -14.78784 -14.49044 -14.24319 -14.00832 -13.82444 -13.77954 -13.47125 -13.03634 -12.91489 -12.78173 -12.66958 -12.34358 -12.26650 -12.19743 -11.99768 -11.80686 -11.48021 -10.87460 -10.71897 -10.58269 -10.20570 -9.89902 -9.29260 -9.13177 -8.91814 -6.59747 -0.53402 -0.00452 0.14132 0.26110 0.75388 1.16592 1.28490 1.33027 1.48108 1.98295 2.02277 2.57068 2.78753 3.23866 3.47243 3.49079 3.74471 3.87055 3.94021 3.96060 4.19839 4.23558 4.33260 4.45564 4.51735 4.56282 4.67132 4.73302 4.76009 4.84658 4.88223 5.05174 5.16638 5.22453 5.37140 5.39109 5.43447 5.58716 5.71508 5.75502 5.80840 6.07191 6.13725 6.43242 6.52460 6.68501 7.22021 7.90227 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.005139 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.532789 B = 5446.843112 C = 7414.261426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.013 4.013 3 C -0.150 4.150 4 C 0.160 3.840 5 Cl -0.025 7.025 6 N -0.505 5.505 7 C 0.144 3.856 8 C -0.070 4.070 9 C 0.123 3.877 10 N -0.442 5.442 11 C 0.000 4.000 12 C -0.066 4.066 13 C -0.160 4.160 14 C -0.089 4.089 15 C -0.164 4.164 16 C -0.040 4.040 17 C -0.273 4.273 18 C 0.046 3.954 19 C -0.424 4.424 20 H 0.075 0.925 21 C 0.059 3.941 22 N -0.804 5.804 23 Si 0.957 3.043 24 H -0.257 1.257 25 H -0.260 1.260 26 H -0.272 1.272 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.179 0.821 31 H 0.157 0.843 32 H 0.136 0.864 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 3.065 -6.921 10.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.022 4.022 3 C -0.170 4.170 4 C -0.004 4.004 5 Cl 0.003 6.997 6 N -0.216 5.216 7 C -0.014 4.014 8 C -0.073 4.073 9 C -0.035 4.035 10 N -0.148 5.148 11 C -0.121 4.121 12 C -0.084 4.084 13 C -0.180 4.180 14 C -0.107 4.107 15 C -0.183 4.183 16 C -0.042 4.042 17 C -0.298 4.298 18 C 0.041 3.959 19 C -0.451 4.451 20 H 0.093 0.907 21 C -0.162 4.162 22 N -0.427 5.427 23 Si 0.781 3.219 24 H -0.182 1.182 25 H -0.184 1.184 26 H -0.198 1.198 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.099 0.901 30 H 0.196 0.804 31 H 0.174 0.826 32 H 0.154 0.846 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.015 3.724 -7.356 10.206 hybrid contribution 0.191 -1.227 1.076 1.643 sum -5.824 2.497 -6.280 8.921 Atomic orbital electron populations 1.20981 0.88024 1.05209 1.03242 1.20658 0.98308 0.90637 0.92562 1.21849 0.91630 1.00226 1.03302 1.21934 0.89637 0.88454 1.00327 1.98368 1.76792 1.28017 1.96525 1.66939 1.41763 0.97869 1.15022 1.22670 0.91096 0.94516 0.93101 1.19430 0.93883 0.92287 1.01674 1.20745 0.96325 0.93648 0.92795 1.67414 1.05240 1.20187 1.21931 1.19817 1.02084 0.90618 0.99537 1.20835 0.93484 0.98085 0.96027 1.20861 1.02478 0.93406 1.01245 1.21051 0.96290 0.99816 0.93542 1.21107 0.99493 0.96220 1.01494 1.19813 0.95160 0.94965 0.94291 1.21157 1.03973 1.00022 1.04661 1.19356 0.93033 0.91984 0.91524 1.19406 1.15007 0.95734 1.14952 0.90681 1.26792 0.92572 1.03229 0.93589 1.69653 1.22804 1.36730 1.13487 0.85563 0.77866 0.77649 0.80813 1.18206 1.18379 1.19779 0.90847 0.87937 0.90133 0.80360 0.82584 0.84616 0.83095 0.83373 0.85898 0.87075 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.37 9.61 71.23 0.68 -2.69 16 2 C -0.01 -0.44 5.94 -19.41 -0.12 -0.55 16 3 C -0.15 -4.37 9.55 22.35 0.21 -4.16 16 4 C 0.16 5.31 7.27 84.72 0.62 5.93 16 5 Cl -0.03 -0.70 29.10 -2.72 -0.08 -0.78 16 6 N -0.50 -19.64 10.32 -185.57 -1.92 -21.55 16 7 C 0.14 5.91 9.33 85.04 0.79 6.71 16 8 C -0.07 -2.82 4.98 -19.96 -0.10 -2.92 16 9 C 0.12 5.44 5.96 43.96 0.26 5.70 16 10 N -0.44 -18.68 8.09 -169.19 -1.37 -20.05 16 11 C 0.00 0.02 6.74 41.55 0.28 0.30 16 12 C -0.07 -2.15 9.98 22.35 0.22 -1.93 16 13 C -0.16 -4.35 9.90 22.03 0.22 -4.13 16 14 C -0.09 -2.50 9.91 22.00 0.22 -2.28 16 15 C -0.16 -5.76 9.80 22.40 0.22 -5.54 16 16 C -0.04 -1.71 5.87 -20.09 -0.12 -1.83 16 17 C -0.27 -12.66 7.10 23.22 0.16 -12.50 16 18 C 0.05 2.22 5.30 -19.91 -0.11 2.12 16 19 C -0.42 -21.26 7.88 23.36 0.18 -21.08 16 20 H 0.08 4.05 7.00 -2.91 -0.02 4.03 16 21 C 0.06 2.88 5.40 85.30 0.46 3.34 16 22 N -0.80 -39.72 13.92 21.85 0.30 -39.42 16 23 Si 0.96 40.00 24.53 68.60 1.68 41.68 16 24 H -0.26 -10.24 6.65 99.48 0.66 -9.57 16 25 H -0.26 -11.50 6.91 99.48 0.69 -10.82 16 26 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.10 2.13 8.08 -2.38 -0.02 2.11 16 29 H 0.08 2.63 5.77 -2.39 -0.01 2.61 16 30 H 0.18 3.73 8.06 -2.91 -0.02 3.70 16 31 H 0.16 6.63 7.58 -2.91 -0.02 6.61 16 32 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 33 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 35 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 36 H 0.11 5.10 4.57 -2.91 -0.01 5.08 16 37 H 0.30 13.36 8.29 -92.71 -0.77 12.59 16 Total: -1.00 -57.26 326.85 3.78 -53.47 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 1.06 Total: 22.14 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 4.10 Total: -35.50 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -2.98 Total: -81.02 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.68 Total: 41.68 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -57.26 3.78 -53.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244914449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.293 kcal (2) G-P(sol) polarization free energy of solvation -57.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds