Wall clock time and date at job start Tue Mar 31 2020 13:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35607 * 117.00041 * 2 1 4 4 C 1.38515 * 120.08101 * 359.97438 * 3 2 1 5 5 C 1.38028 * 120.30799 * 180.02562 * 4 3 2 6 6 C 1.39956 * 120.46827 * 0.02562 * 5 4 3 7 7 C 1.48353 * 119.91930 * 179.97438 * 6 5 4 8 8 C 1.39372 * 120.07741 * 309.99619 * 7 6 5 9 9 C 1.38396 * 119.90679 * 179.97438 * 8 7 6 10 10 O 1.35996 * 119.96486 * 179.97438 * 9 8 7 11 11 C 1.38979 * 120.06615 * 359.97438 * 9 8 7 12 12 F 1.35100 * 119.91785 * 180.02562 * 11 9 8 13 13 C 1.38549 * 120.16314 * 0.04135 * 11 9 8 14 14 F 1.35093 * 119.95547 * 179.97438 * 13 11 9 15 15 C 1.38462 * 120.08858 * 359.97438 * 13 11 9 16 16 F 1.35095 * 120.03451 * 179.97438 * 15 13 11 17 17 C 1.38617 * 120.15912 * 0.25265 * 6 5 4 18 18 C 1.40528 * 119.68555 * 359.47631 * 17 6 5 19 19 C 1.41180 * 120.22569 * 180.27047 * 18 17 6 20 20 H 1.08005 * 119.99482 * 154.55412 * 19 18 17 21 21 C 1.39899 * 120.00445 * 334.55054 * 19 18 17 22 22 N 1.30885 * 119.99888 * 343.26312 * 21 19 18 23 23 Si 1.86802 * 120.00104 * 163.26267 * 21 19 18 24 24 H 1.48496 * 109.47153 * 90.00313 * 23 21 19 25 25 H 1.48494 * 109.46810 * 210.00221 * 23 21 19 26 26 H 1.48501 * 109.47107 * 330.00183 * 23 21 19 27 27 H 1.08994 * 109.46922 * 300.00279 * 1 2 3 28 28 H 1.09004 * 109.46753 * 60.00532 * 1 2 3 29 29 H 1.09001 * 109.46819 * 180.02562 * 1 2 3 30 30 H 1.07991 * 119.84758 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.76794 * 180.02562 * 5 4 3 32 32 H 1.07999 * 120.04835 * 0.25609 * 8 7 6 33 33 H 0.96708 * 113.99572 * 90.00258 * 10 9 8 34 34 H 1.08001 * 120.15843 * 179.72552 * 17 6 5 35 35 H 0.96997 * 119.99804 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2919 2.3710 -0.0005 5 6 1.9137 3.6033 -0.0011 6 6 3.3103 3.6935 -0.0016 7 6 3.9659 5.0243 -0.0028 8 6 3.5788 5.9928 -0.9272 9 6 4.1924 7.2333 -0.9248 10 8 3.8160 8.1791 -1.8267 11 6 5.1928 7.5135 -0.0016 12 9 5.7893 8.7257 -0.0016 13 6 5.5800 6.5528 0.9184 14 9 6.5532 6.8294 1.8136 15 6 4.9708 5.3094 0.9217 16 9 5.3495 4.3731 1.8190 17 6 4.0825 2.5424 -0.0069 18 6 3.4564 1.2843 -0.0006 19 6 4.2318 0.1045 -0.0001 20 1 3.8242 -0.8094 0.4062 21 6 5.5282 0.1191 -0.5260 22 7 5.9085 1.1021 -1.3020 23 14 6.7163 -1.2642 -0.1206 24 1 6.5848 -2.3423 -1.1332 25 1 8.1062 -0.7418 -0.1313 26 1 6.4022 -1.8080 1.2251 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 0.2136 2.3132 -0.0005 31 1 1.3183 4.5043 -0.0011 32 1 2.7981 5.7772 -1.6416 33 1 3.0997 8.7519 -1.5201 34 1 5.1603 2.6120 -0.0118 35 1 6.8071 1.1120 -1.6669 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245635602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:23 Heat of formation + Delta-G solvation = -184.297087 kcal Electronic energy + Delta-G solvation = -26858.905803 eV Core-core repulsion = 22372.294159 eV Total energy + Delta-G solvation = -4486.611643 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.88473 -50.22561 -49.55788 -40.85866 -40.23636 -38.32363 -37.26138 -35.54059 -32.76200 -31.61971 -30.79578 -29.33111 -27.99337 -26.98391 -24.58860 -24.25536 -22.80801 -21.91579 -19.97206 -19.35795 -19.18984 -18.99751 -18.30559 -18.10265 -17.75882 -17.27005 -16.76912 -16.60411 -16.33119 -16.20358 -16.16844 -15.96201 -15.58532 -15.54916 -15.26225 -14.74036 -14.51334 -14.25193 -13.75623 -13.53192 -13.47200 -13.19954 -12.83263 -12.71125 -12.65721 -12.47630 -12.15077 -12.10731 -11.74914 -11.56607 -11.29148 -11.04215 -10.09518 -9.81965 -9.41858 -8.76537 -8.53484 -6.23077 -0.55734 -0.45025 0.87460 0.98799 1.37025 1.45708 1.51672 1.95920 2.12953 2.21854 2.67790 2.80931 2.90894 2.99735 3.23158 3.37572 3.49227 3.65467 4.07445 4.32632 4.43979 4.52211 4.53605 4.54870 4.62944 4.72055 4.78908 4.88847 4.98143 5.18504 5.32995 5.40519 5.44829 5.79937 5.80052 6.01514 6.27314 6.44122 6.62310 6.77854 6.91173 7.20465 8.35648 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012439 B = 0.004578 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.504234 B = 6114.597003 C = 7550.651799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.340 6.340 3 C 0.017 3.983 4 C -0.181 4.181 5 C -0.165 4.165 6 C -0.092 4.092 7 C -0.012 4.012 8 C -0.080 4.080 9 C 0.124 3.876 10 O -0.479 6.479 11 C 0.054 3.946 12 F -0.118 7.118 13 C 0.043 3.957 14 F -0.125 7.125 15 C 0.071 3.929 16 F -0.129 7.129 17 C -0.130 4.130 18 C 0.053 3.947 19 C -0.482 4.482 20 H 0.070 0.930 21 C 0.034 3.966 22 N -0.829 5.829 23 Si 0.973 3.027 24 H -0.261 1.261 25 H -0.268 1.268 26 H -0.262 1.262 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.109 0.891 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.180 0.820 33 H 0.423 0.577 34 H 0.105 0.895 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.017 10.709 0.326 12.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.255 6.255 3 C -0.028 4.028 4 C -0.200 4.200 5 C -0.184 4.184 6 C -0.092 4.092 7 C -0.013 4.013 8 C -0.098 4.098 9 C 0.077 3.923 10 O -0.293 6.293 11 C 0.033 3.967 12 F -0.097 7.097 13 C 0.022 3.978 14 F -0.103 7.103 15 C 0.051 3.949 16 F -0.108 7.108 17 C -0.150 4.150 18 C 0.050 3.950 19 C -0.512 4.512 20 H 0.088 0.912 21 C -0.179 4.179 22 N -0.456 5.456 23 Si 0.794 3.206 24 H -0.186 1.186 25 H -0.193 1.193 26 H -0.186 1.186 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.127 0.873 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.197 0.803 33 H 0.284 0.716 34 H 0.123 0.877 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.245 10.392 -0.094 12.125 hybrid contribution 0.755 -0.378 0.855 1.201 sum -5.490 10.014 0.760 11.445 Atomic orbital electron populations 1.23133 0.78306 1.04301 1.01313 1.85924 1.21797 1.27981 1.89796 1.19570 0.92088 0.84313 1.06854 1.20940 0.99406 0.91716 1.07952 1.20566 0.91737 0.97135 1.08931 1.18311 0.93953 0.89640 1.07319 1.18829 0.93744 0.95090 0.93679 1.21516 1.00593 0.90148 0.97558 1.17778 0.94344 0.90690 0.89461 1.84862 1.59243 1.46360 1.38834 1.17701 0.99173 0.81540 0.98310 1.91521 1.82266 1.40039 1.95841 1.17299 0.93160 0.93623 0.93741 1.91513 1.59612 1.93800 1.65413 1.17677 0.98891 0.85580 0.92791 1.91528 1.90120 1.63730 1.65401 1.21053 0.98762 0.90543 1.04615 1.17324 0.89122 0.94205 0.94316 1.19489 0.98676 0.96727 1.36334 0.91206 1.26601 0.99799 0.99355 0.92164 1.69854 1.20056 1.32383 1.23268 0.85332 0.77081 0.78302 0.79853 1.18593 1.19278 1.18579 0.92555 0.92620 0.87291 0.84401 0.84276 0.80278 0.71576 0.87734 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 9.81 113.37 1.11 1.83 16 2 O -0.34 -15.00 9.78 -89.17 -0.87 -15.88 16 3 C 0.02 0.79 6.72 23.11 0.16 0.95 16 4 C -0.18 -7.06 9.01 22.29 0.20 -6.86 16 5 C -0.16 -6.08 9.49 22.64 0.21 -5.87 16 6 C -0.09 -3.87 5.31 -20.08 -0.11 -3.98 16 7 C -0.01 -0.43 5.47 -20.01 -0.11 -0.54 16 8 C -0.08 -2.12 9.43 22.58 0.21 -1.91 16 9 C 0.12 2.97 6.70 22.48 0.15 3.12 16 10 O -0.48 -8.70 13.36 -93.51 -1.25 -9.95 16 11 C 0.05 1.50 7.31 22.52 0.16 1.66 16 12 F -0.12 -3.24 17.01 44.97 0.76 -2.47 16 13 C 0.04 1.41 7.30 22.40 0.16 1.57 16 14 F -0.12 -4.24 17.08 44.97 0.77 -3.47 16 15 C 0.07 2.62 7.15 22.62 0.16 2.78 16 16 F -0.13 -5.52 15.79 44.97 0.71 -4.81 16 17 C -0.13 -6.65 7.47 22.92 0.17 -6.48 16 18 C 0.05 2.84 5.58 -21.23 -0.12 2.72 16 19 C -0.48 -26.82 8.70 23.40 0.20 -26.61 16 20 H 0.07 3.89 7.66 -2.91 -0.02 3.87 16 21 C 0.03 1.79 5.15 85.24 0.44 2.23 16 22 N -0.83 -44.26 10.95 21.82 0.24 -44.02 16 23 Si 0.97 40.21 29.59 68.60 2.03 42.24 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 25 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 26 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 27 H 0.06 1.47 7.66 -2.39 -0.02 1.46 16 28 H 0.06 1.48 7.66 -2.38 -0.02 1.46 16 29 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.14 4.27 6.27 -2.92 -0.02 4.26 16 31 H 0.14 3.93 8.03 -2.91 -0.02 3.90 16 32 H 0.18 3.95 8.03 -2.91 -0.02 3.92 16 33 H 0.42 2.77 9.07 -74.05 -0.67 2.10 16 34 H 0.10 5.81 5.90 -2.91 -0.02 5.79 16 35 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 Total: -1.00 -66.69 322.20 5.93 -60.76 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.52 Total: 12.97 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 3.02 Total: -35.38 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.24 Total: -44.02 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -2.12 Total: -25.82 kcal Atomic # 9 Polarization: -13.00 SS G_CDS: 2.24 Total: -10.76 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -66.69 5.93 -60.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245635602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.537 kcal (2) G-P(sol) polarization free energy of solvation -66.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds