Wall clock time and date at job start Tue Mar 31 2020 13:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35623 * 117.00139 * 2 1 4 4 C 1.39138 * 119.88028 * 359.71983 * 3 2 1 5 5 C 1.36420 * 120.43278 * 179.76478 * 4 3 2 6 6 C 1.40914 * 120.19432 * 0.51622 * 5 4 3 7 7 C 1.41235 * 120.12144 * 179.76419 * 6 5 4 8 8 H 1.08004 * 119.99855 * 24.58636 * 7 6 5 9 9 C 1.39858 * 120.00109 * 204.58436 * 7 6 5 10 10 N 1.30902 * 119.99854 * 17.96345 * 9 7 6 11 11 Si 1.86799 * 120.00165 * 197.95594 * 9 7 6 12 12 H 1.48503 * 109.46715 * 60.00498 * 11 9 7 13 13 H 1.48496 * 109.47063 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47373 * 300.00356 * 11 9 7 15 15 C 1.40615 * 119.76090 * 359.74203 * 6 5 4 16 16 C 1.38601 * 119.56726 * 0.02562 * 15 6 5 17 17 C 1.48319 * 120.09363 * 180.02562 * 16 15 6 18 18 C 1.39391 * 120.07669 * 64.97498 * 17 16 15 19 19 C 1.38389 * 119.90320 * 179.97438 * 18 17 16 20 20 O 1.35999 * 119.96248 * 180.02562 * 19 18 17 21 21 C 1.38979 * 120.07029 * 0.02562 * 19 18 17 22 22 F 1.35106 * 119.91688 * 179.97438 * 21 19 18 23 23 C 1.38550 * 120.16273 * 359.97438 * 21 19 18 24 24 F 1.35103 * 119.95605 * 179.97438 * 23 21 19 25 25 C 1.38453 * 120.08961 * 359.73913 * 23 21 19 26 26 F 1.35098 * 120.03512 * 180.25260 * 25 23 21 27 27 H 1.08998 * 109.47074 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47365 * 300.00387 * 1 2 3 29 29 H 1.08998 * 109.47120 * 60.00304 * 1 2 3 30 30 H 1.07997 * 119.77761 * 0.02617 * 4 3 2 31 31 H 1.08011 * 119.90217 * 180.23667 * 5 4 3 32 32 H 0.96992 * 119.99613 * 179.97438 * 10 9 7 33 33 H 1.07998 * 120.21848 * 180.02562 * 15 6 5 34 34 H 1.07997 * 120.04905 * 359.95646 * 18 17 16 35 35 H 0.96700 * 113.99904 * 90.00803 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2845 2.3737 -0.0059 5 6 1.8921 3.5951 -0.0011 6 6 3.2982 3.6872 -0.0011 7 6 3.9257 4.9526 -0.0012 8 1 3.4035 5.8142 0.3879 9 6 5.2231 5.0898 -0.5051 10 7 5.7243 4.1640 -1.2832 11 14 6.2406 6.5941 -0.0681 12 1 6.4189 6.6602 1.4047 13 1 7.5694 6.5006 -0.7244 14 1 5.5421 7.8176 -0.5376 15 6 4.0745 2.5148 -0.0006 16 6 3.4469 1.2790 -0.0006 17 6 4.2543 0.0348 0.0006 18 6 5.0617 -0.2729 1.0943 19 6 5.8132 -1.4350 1.0918 20 8 6.6009 -1.7368 2.1586 21 6 5.7636 -2.2940 0.0004 22 9 6.4989 -3.4275 0.0010 23 6 4.9620 -1.9909 -1.0882 24 9 4.9174 -2.8286 -2.1472 25 6 4.2029 -0.8330 -1.0903 26 9 3.4177 -0.5410 -2.1502 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2064 2.3108 -0.0100 31 1 1.2936 4.4943 -0.0019 32 1 6.6239 4.2594 -1.6329 33 1 5.1527 2.5767 -0.0002 34 1 5.1010 0.3946 1.9423 35 1 6.1568 -2.2595 2.8402 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245636593.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:09 Heat of formation + Delta-G solvation = -182.507771 kcal Electronic energy + Delta-G solvation = -27236.667007 eV Core-core repulsion = 22750.132954 eV Total energy + Delta-G solvation = -4486.534053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.87403 -50.21019 -49.54024 -40.98510 -40.15592 -38.21488 -37.59552 -35.21885 -33.33246 -31.03380 -30.79306 -29.71579 -28.32130 -26.46495 -24.82655 -24.26879 -22.56141 -22.12964 -19.99882 -19.38374 -19.33830 -18.75891 -18.50599 -18.12131 -17.77178 -17.06997 -16.94687 -16.67062 -16.37235 -16.20509 -16.13857 -15.89903 -15.59185 -15.52888 -15.25309 -14.87958 -14.40444 -14.30493 -13.84123 -13.75478 -13.32376 -13.06360 -12.86005 -12.74618 -12.64264 -12.37676 -12.31836 -12.08793 -11.75401 -11.60726 -11.30470 -10.87870 -10.12856 -9.85734 -9.35232 -8.90423 -8.58584 -6.21898 -0.51163 -0.43898 0.80230 0.99787 1.42586 1.51511 1.55089 1.91562 2.12110 2.24156 2.64894 2.77461 2.81605 2.99759 3.23531 3.34960 3.48057 3.66947 4.04716 4.28018 4.39054 4.49623 4.51467 4.55540 4.69004 4.72916 4.78663 4.91102 5.05234 5.17974 5.27639 5.36130 5.48157 5.55683 5.83790 6.00588 6.22168 6.54729 6.59560 6.77324 6.95744 7.04662 8.37272 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011413 B = 0.005024 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.759350 B = 5571.645870 C = 6929.332741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.338 6.338 3 C 0.027 3.973 4 C -0.169 4.169 5 C -0.190 4.190 6 C 0.055 3.945 7 C -0.495 4.495 8 H 0.078 0.922 9 C 0.038 3.962 10 N -0.830 5.830 11 Si 0.976 3.024 12 H -0.258 1.258 13 H -0.273 1.273 14 H -0.262 1.262 15 C -0.124 4.124 16 C -0.086 4.086 17 C -0.009 4.009 18 C -0.084 4.084 19 C 0.120 3.880 20 O -0.479 6.479 21 C 0.057 3.943 22 F -0.117 7.117 23 C 0.042 3.958 24 F -0.123 7.123 25 C 0.088 3.912 26 F -0.126 7.126 27 H 0.113 0.887 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.133 0.867 31 H 0.108 0.892 32 H 0.286 0.714 33 H 0.116 0.884 34 H 0.169 0.831 35 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.222 -9.674 5.947 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.254 6.254 3 C -0.018 4.018 4 C -0.187 4.187 5 C -0.209 4.209 6 C 0.053 3.947 7 C -0.524 4.524 8 H 0.097 0.903 9 C -0.177 4.177 10 N -0.457 5.457 11 Si 0.797 3.203 12 H -0.183 1.183 13 H -0.198 1.198 14 H -0.186 1.186 15 C -0.143 4.143 16 C -0.087 4.087 17 C -0.011 4.011 18 C -0.102 4.102 19 C 0.074 3.926 20 O -0.293 6.293 21 C 0.036 3.964 22 F -0.095 7.095 23 C 0.021 3.979 24 F -0.101 7.101 25 C 0.068 3.932 26 F -0.104 7.104 27 H 0.131 0.869 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.150 0.850 31 H 0.127 0.873 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.187 0.813 35 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -1.525 -9.695 5.427 11.215 hybrid contribution -0.218 0.318 -0.511 0.640 sum -1.743 -9.377 4.916 10.730 Atomic orbital electron populations 1.23096 0.78029 1.04369 1.01270 1.85835 1.22073 1.27036 1.90427 1.18617 0.90508 0.84301 1.08355 1.20664 0.99292 0.91856 1.06917 1.20897 0.94362 0.96524 1.09130 1.17809 0.91754 0.93695 0.91466 1.19648 0.99800 0.95160 1.37841 0.90344 1.26639 0.98576 1.00598 0.91845 1.69878 1.17002 1.35620 1.23204 0.85336 0.77177 0.78028 0.79732 1.18269 1.19784 1.18593 1.21165 0.99373 0.89709 1.04066 1.17699 0.89662 0.91356 1.09983 1.18656 0.96771 0.93503 0.92133 1.21502 0.93343 0.96660 0.98702 1.17736 0.93712 0.92550 0.88630 1.84855 1.38359 1.75995 1.30075 1.17633 0.96733 0.86320 0.95679 1.91522 1.74374 1.47070 1.96552 1.17226 1.02892 0.90848 0.86936 1.91515 1.95456 1.69368 1.53782 1.17535 0.94595 0.94411 0.86704 1.91502 1.71956 1.93083 1.53888 0.86877 0.92353 0.93351 0.84973 0.87341 0.90297 0.86636 0.81315 0.71727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.80 113.37 1.11 1.83 16 2 O -0.34 -12.50 9.61 -89.36 -0.86 -13.36 16 3 C 0.03 1.12 6.51 23.01 0.15 1.27 16 4 C -0.17 -6.90 8.95 22.06 0.20 -6.70 16 5 C -0.19 -8.65 9.72 22.50 0.22 -8.43 16 6 C 0.05 2.79 5.57 -21.31 -0.12 2.67 16 7 C -0.49 -25.30 9.03 23.40 0.21 -25.08 16 8 H 0.08 3.84 7.91 -2.91 -0.02 3.82 16 9 C 0.04 1.83 5.13 85.22 0.44 2.27 16 10 N -0.83 -42.48 10.96 21.81 0.24 -42.24 16 11 Si 0.98 37.10 29.60 68.60 2.03 39.13 16 12 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 13 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 14 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 15 C -0.12 -6.11 8.36 22.94 0.19 -5.92 16 16 C -0.09 -3.82 5.01 -19.98 -0.10 -3.92 16 17 C -0.01 -0.36 4.94 -20.01 -0.10 -0.45 16 18 C -0.08 -2.59 9.66 22.58 0.22 -2.37 16 19 C 0.12 3.26 6.70 22.48 0.15 3.41 16 20 O -0.48 -10.15 13.36 -93.54 -1.25 -11.39 16 21 C 0.06 1.71 7.31 22.52 0.16 1.87 16 22 F -0.12 -3.35 17.01 44.97 0.76 -2.58 16 23 C 0.04 1.43 7.30 22.40 0.16 1.60 16 24 F -0.12 -4.20 17.08 44.97 0.77 -3.43 16 25 C 0.09 3.37 6.94 22.62 0.16 3.53 16 26 F -0.13 -5.35 16.51 44.97 0.74 -4.61 16 27 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.06 1.38 7.66 -2.38 -0.02 1.36 16 29 H 0.05 1.25 7.63 -2.39 -0.02 1.23 16 30 H 0.13 4.45 6.25 -2.91 -0.02 4.43 16 31 H 0.11 4.59 8.06 -2.90 -0.02 4.57 16 32 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 33 H 0.12 5.99 6.16 -2.91 -0.02 5.97 16 34 H 0.17 4.75 8.06 -2.91 -0.02 4.73 16 35 H 0.42 4.10 9.06 -74.06 -0.67 3.43 16 Total: -1.00 -61.49 323.65 6.01 -55.48 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.52 Total: 17.42 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.05 Total: -34.43 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.24 Total: -42.24 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -2.11 Total: -24.75 kcal Atomic # 9 Polarization: -12.89 SS G_CDS: 2.28 Total: -10.62 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Total: -61.49 6.01 -55.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245636593.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.023 kcal (2) G-P(sol) polarization free energy of solvation -61.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds