Wall clock time and date at job start Tue Mar 31 2020 13:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35679 * 117.00150 * 2 1 4 4 C 1.37933 * 120.18789 * 359.97438 * 3 2 1 5 5 C 1.39685 * 119.92705 * 179.97438 * 4 3 2 6 6 C 1.47930 * 119.83786 * 180.02562 * 5 4 3 7 7 C 1.39650 * 120.10181 * 130.02485 * 6 5 4 8 8 C 1.38267 * 119.88826 * 179.97438 * 7 6 5 9 9 O 1.35995 * 119.95071 * 179.97438 * 8 7 6 10 10 C 1.39096 * 120.09806 * 359.97051 * 8 7 6 11 11 F 1.35094 * 119.90017 * 180.02562 * 10 8 7 12 12 C 1.38602 * 120.20331 * 0.02562 * 10 8 7 13 13 F 1.35099 * 119.94741 * 179.97438 * 12 10 8 14 14 C 1.38399 * 120.11041 * 359.74587 * 12 10 8 15 15 F 1.35093 * 120.04710 * 180.27472 * 14 12 10 16 16 C 1.40123 * 120.31680 * 0.02562 * 5 4 3 17 17 C 1.36089 * 120.38595 * 359.97438 * 16 5 4 18 18 C 1.40923 * 120.06413 * 0.27279 * 17 16 5 19 19 C 1.40821 * 120.15825 * 179.72130 * 18 17 16 20 20 H 1.07999 * 120.00102 * 204.93949 * 19 18 17 21 21 C 1.39973 * 119.99591 * 24.94376 * 19 18 17 22 22 N 1.30860 * 120.00253 * 17.83650 * 21 19 18 23 23 Si 1.86799 * 119.99601 * 197.83941 * 21 19 18 24 24 H 1.48504 * 109.47286 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47083 * 120.00058 * 23 21 19 26 26 H 1.48498 * 109.47080 * 239.99896 * 23 21 19 27 27 H 1.08996 * 109.47112 * 300.00205 * 1 2 3 28 28 H 1.08997 * 109.47055 * 60.00105 * 1 2 3 29 29 H 1.09004 * 109.46822 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.03725 * 359.96038 * 4 3 2 31 31 H 1.07995 * 120.05283 * 359.94631 * 7 6 5 32 32 H 0.96701 * 113.99980 * 89.99280 * 9 8 7 33 33 H 1.07996 * 119.80421 * 179.97438 * 16 5 4 34 34 H 1.08006 * 119.96708 * 179.97438 * 17 16 5 35 35 H 0.96994 * 120.00060 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2976 2.3682 -0.0005 5 6 1.9374 3.6099 0.0000 6 6 1.1339 4.8519 0.0000 7 6 1.4055 5.8618 0.9255 8 6 0.6521 7.0211 0.9212 9 8 0.9151 8.0052 1.8223 10 6 -0.3745 7.1825 -0.0034 11 9 -1.1078 8.3170 -0.0043 12 6 -0.6474 6.1827 -0.9238 13 9 -1.6460 6.3446 -1.8192 14 6 0.1045 5.0208 -0.9302 15 9 -0.1590 4.0495 -1.8314 16 6 3.3367 3.6845 0.0006 17 6 4.0866 2.5489 0.0011 18 6 3.4579 1.2877 -0.0047 19 6 4.2320 0.1114 -0.0101 20 1 3.8205 -0.8041 -0.4087 21 6 5.5349 0.1287 0.5012 22 7 5.9166 1.1031 1.2869 23 14 6.7288 -1.2392 0.0620 24 1 6.0568 -2.2139 -0.8345 25 1 7.9097 -0.6625 -0.6294 26 1 7.1688 -1.9291 1.3012 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2189 2.3159 -0.0016 31 1 2.2024 5.7372 1.6437 32 1 1.5600 8.6572 1.5156 33 1 3.8228 4.6489 0.0006 34 1 5.1647 2.6144 0.0011 35 1 6.8195 1.1152 1.6409 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245636843.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:26 Heat of formation + Delta-G solvation = -184.513248 kcal Electronic energy + Delta-G solvation = -26677.338846 eV Core-core repulsion = 22190.717830 eV Total energy + Delta-G solvation = -4486.621017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.85774 -50.19232 -49.52902 -40.84955 -40.20921 -38.23707 -37.38585 -35.63537 -32.86160 -31.01489 -30.69018 -30.14010 -28.10058 -26.94811 -24.43229 -24.17961 -22.56767 -22.12973 -19.92573 -19.39229 -19.30675 -19.11272 -18.28314 -17.90724 -17.67655 -17.20508 -16.86604 -16.54340 -16.38360 -16.25119 -15.99808 -15.96769 -15.69472 -15.48734 -15.34550 -14.90336 -14.50745 -14.27394 -13.79184 -13.56499 -13.43224 -13.06983 -12.87847 -12.78064 -12.63879 -12.46826 -12.14991 -12.01273 -11.67492 -11.62974 -11.38010 -11.09151 -10.09923 -9.83040 -9.24406 -8.94517 -8.64795 -6.25579 -0.54197 -0.42044 0.78837 1.12488 1.40952 1.46907 1.55576 1.97106 2.16623 2.21539 2.64223 2.83015 2.88377 3.03162 3.25277 3.43492 3.52078 3.65472 4.11463 4.27038 4.41455 4.44735 4.49668 4.57087 4.64150 4.71550 4.77490 4.89721 5.02587 5.11311 5.35524 5.38470 5.43871 5.77174 5.80568 6.05860 6.22066 6.47215 6.61379 6.71796 6.81850 7.16854 8.25381 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.003571 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.882805 B = 7839.433703 C = 8830.100163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.338 6.338 3 C -0.008 4.008 4 C -0.144 4.144 5 C -0.181 4.181 6 C 0.009 3.991 7 C -0.093 4.093 8 C 0.125 3.875 9 O -0.482 6.482 10 C 0.044 3.956 11 F -0.121 7.121 12 C 0.049 3.951 13 F -0.125 7.125 14 C 0.064 3.936 15 F -0.128 7.128 16 C -0.085 4.085 17 C -0.173 4.173 18 C 0.077 3.923 19 C -0.466 4.466 20 H 0.073 0.927 21 C 0.038 3.962 22 N -0.807 5.807 23 Si 0.981 3.019 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.264 1.264 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.171 0.829 32 H 0.422 0.578 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.244 9.419 -0.328 10.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.253 6.253 3 C -0.052 4.052 4 C -0.163 4.163 5 C -0.182 4.182 6 C 0.007 3.993 7 C -0.112 4.112 8 C 0.079 3.921 9 O -0.297 6.297 10 C 0.023 3.977 11 F -0.099 7.099 12 C 0.028 3.972 13 F -0.103 7.103 14 C 0.044 3.956 15 F -0.106 7.106 16 C -0.103 4.103 17 C -0.192 4.192 18 C 0.074 3.926 19 C -0.494 4.494 20 H 0.091 0.909 21 C -0.179 4.179 22 N -0.432 5.432 23 Si 0.801 3.199 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.189 1.189 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.188 0.812 32 H 0.283 0.717 33 H 0.143 0.857 34 H 0.134 0.866 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.434 9.050 0.101 10.556 hybrid contribution 0.005 -0.245 -0.818 0.854 sum -5.429 8.805 -0.717 10.369 Atomic orbital electron populations 1.23057 0.78838 1.04228 1.00657 1.85915 1.21212 1.27749 1.90396 1.19199 0.92306 0.83772 1.09941 1.20771 0.98042 0.91693 1.05790 1.17668 0.92465 0.89675 1.18426 1.18654 0.92717 0.94983 0.92900 1.21544 1.00465 0.91048 0.98097 1.17814 0.93710 0.91179 0.89431 1.84839 1.66703 1.38927 1.39187 1.17712 0.97167 0.84073 0.98771 1.91511 1.75533 1.46998 1.95895 1.17265 0.91459 0.95128 0.93337 1.91517 1.57793 1.95616 1.65394 1.17610 0.99149 0.86276 0.92612 1.91504 1.93117 1.60859 1.65146 1.20591 0.91876 0.98004 0.99827 1.20733 0.99498 0.90979 1.08024 1.17563 0.88583 0.94899 0.91566 1.19694 0.98156 0.96817 1.34739 0.90917 1.26722 0.99739 0.99472 0.91936 1.69838 1.20271 1.31825 1.21228 0.85168 0.77488 0.77927 0.79275 1.18717 1.18325 1.18910 0.93347 0.93463 0.86814 0.86891 0.81179 0.71694 0.85743 0.86585 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.81 113.37 1.11 2.02 16 2 O -0.34 -15.47 9.78 -89.96 -0.88 -16.35 16 3 C -0.01 -0.39 6.71 23.01 0.15 -0.23 16 4 C -0.14 -6.19 7.83 22.55 0.18 -6.02 16 5 C -0.18 -7.21 5.33 -19.90 -0.11 -7.32 16 6 C 0.01 0.29 5.47 -20.00 -0.11 0.18 16 7 C -0.09 -2.40 9.43 22.62 0.21 -2.18 16 8 C 0.13 2.89 6.70 22.48 0.15 3.04 16 9 O -0.48 -8.80 13.36 -93.49 -1.25 -10.05 16 10 C 0.04 1.14 7.32 22.56 0.17 1.30 16 11 F -0.12 -3.15 17.01 44.97 0.76 -2.38 16 12 C 0.05 1.45 7.30 22.40 0.16 1.61 16 13 F -0.12 -3.80 17.08 44.97 0.77 -3.03 16 14 C 0.06 2.08 7.16 22.68 0.16 2.24 16 15 F -0.13 -4.62 15.80 44.97 0.71 -3.91 16 16 C -0.08 -3.49 9.42 22.23 0.21 -3.29 16 17 C -0.17 -8.36 8.61 22.43 0.19 -8.17 16 18 C 0.08 4.02 5.58 -21.18 -0.12 3.90 16 19 C -0.47 -24.58 8.69 23.32 0.20 -24.38 16 20 H 0.07 3.89 7.65 -2.91 -0.02 3.87 16 21 C 0.04 1.83 5.13 85.26 0.44 2.27 16 22 N -0.81 -39.09 10.97 21.84 0.24 -38.85 16 23 Si 0.98 36.51 29.60 68.60 2.03 38.55 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 25 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 26 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 27 H 0.05 1.51 7.66 -2.39 -0.02 1.49 16 28 H 0.05 1.49 7.66 -2.39 -0.02 1.47 16 29 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.11 4.44 6.01 -2.91 -0.02 4.42 16 31 H 0.17 3.96 8.04 -2.91 -0.02 3.93 16 32 H 0.42 3.13 9.06 -74.06 -0.67 2.46 16 33 H 0.12 4.27 8.03 -2.91 -0.02 4.25 16 34 H 0.12 5.77 6.17 -2.91 -0.02 5.75 16 35 H 0.29 12.64 8.30 -92.71 -0.77 11.88 16 Total: -1.00 -60.74 322.12 5.91 -54.83 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.52 Total: 16.22 kcal Atomic # 6 Polarization: -38.03 SS G_CDS: 3.01 Total: -35.02 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.24 Total: -38.85 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -2.13 Total: -26.40 kcal Atomic # 9 Polarization: -11.56 SS G_CDS: 2.24 Total: -9.32 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.55 kcal Total: -60.74 5.91 -54.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245636843.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.686 kcal (2) G-P(sol) polarization free energy of solvation -60.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds