Wall clock time and date at job start Tue Mar 31 2020 13:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31707 * 119.70774 * 2 1 4 4 C 1.32024 * 121.85532 * 180.02562 * 3 2 1 5 5 Cl 1.73603 * 119.47605 * 180.02562 * 4 3 2 6 6 C 1.38547 * 121.04859 * 0.02562 * 4 3 2 7 7 C 1.38270 * 119.29586 * 359.70389 * 6 4 3 8 8 C 1.39526 * 119.70986 * 180.02562 * 2 1 3 9 9 C 1.47921 * 120.54872 * 359.95592 * 8 2 1 10 10 N 1.31574 * 119.44175 * 53.70771 * 9 8 2 11 11 C 1.33652 * 121.74485 * 180.02562 * 10 9 8 12 12 C 1.40488 * 120.98903 * 180.02562 * 11 10 9 13 13 C 1.36251 * 119.70334 * 179.97438 * 12 11 10 14 14 C 1.39155 * 121.75883 * 359.97438 * 13 12 11 15 15 C 1.36133 * 121.46721 * 0.02562 * 14 13 12 16 16 C 1.40791 * 119.46312 * 359.97438 * 15 14 13 17 17 C 1.40026 * 121.39850 * 180.26508 * 16 15 14 18 18 C 1.40374 * 117.96221 * 180.21057 * 17 16 15 19 19 C 1.40846 * 120.41362 * 179.78386 * 18 17 16 20 20 H 1.08000 * 120.00213 * 207.28333 * 19 18 17 21 21 C 1.40090 * 119.99656 * 27.27795 * 19 18 17 22 22 N 1.30765 * 120.00323 * 200.31527 * 21 19 18 23 23 Si 1.86806 * 120.00183 * 20.32276 * 21 19 18 24 24 H 1.48497 * 109.46868 * 265.89744 * 23 21 19 25 25 H 1.48497 * 109.46895 * 25.89703 * 23 21 19 26 26 H 1.48497 * 109.47094 * 145.89748 * 23 21 19 27 27 H 1.09001 * 109.46878 * 264.21372 * 1 2 3 28 28 H 1.08992 * 109.47473 * 24.21805 * 1 2 3 29 29 H 1.09000 * 109.46901 * 144.22047 * 1 2 3 30 30 H 1.08005 * 120.35280 * 179.97438 * 6 4 3 31 31 H 1.07999 * 120.84511 * 180.27097 * 7 6 4 32 32 H 1.07997 * 120.14631 * 359.96643 * 12 11 10 33 33 H 1.07997 * 119.11665 * 180.02562 * 13 12 11 34 34 H 1.08002 * 119.26968 * 179.97438 * 14 13 12 35 35 H 1.08000 * 120.27153 * 179.97438 * 15 14 13 36 36 H 1.07997 * 121.01519 * 359.97438 * 17 16 15 37 37 H 0.96994 * 120.00202 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1597 1.1440 0.0000 4 6 3.4791 1.1934 -0.0005 5 17 4.2760 2.7357 0.0002 6 6 4.2376 0.0341 -0.0016 7 6 3.5990 -1.1923 0.0041 8 6 2.1985 -1.2118 -0.0005 9 6 1.4647 -2.4962 -0.0001 10 7 0.5544 -2.7212 -0.9231 11 6 -0.1361 -3.8648 -0.9657 12 6 -1.1043 -4.0886 -1.9587 13 6 -1.7926 -5.2643 -1.9779 14 6 -1.5644 -6.2620 -1.0350 15 6 -0.6405 -6.1083 -0.0471 16 6 0.1033 -4.9151 0.0258 17 6 1.0675 -4.7162 1.0216 18 6 1.7639 -3.4974 1.0295 19 6 2.7414 -3.2411 2.0105 20 1 2.9556 -2.2249 2.3069 21 6 3.4359 -4.3043 2.6019 22 7 4.0323 -4.1359 3.7533 23 14 3.5101 -5.9629 1.7455 24 1 2.4193 -6.8322 2.2550 25 1 3.3480 -5.7718 0.2818 26 1 4.8218 -6.6029 2.0189 27 1 -0.3633 -0.1036 1.0225 28 1 -0.3634 0.9371 -0.4215 29 1 -0.3633 -0.8337 -0.6008 30 1 5.3163 0.0877 -0.0024 31 1 4.1657 -2.1117 0.0078 32 1 -1.3022 -3.3320 -2.7036 33 1 -2.5345 -5.4265 -2.7457 34 1 -2.1334 -7.1784 -1.0877 35 1 -0.4794 -6.8951 0.6749 36 1 1.2665 -5.4757 1.7631 37 1 4.5135 -4.8720 4.1626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245771156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:17 Heat of formation + Delta-G solvation = 64.814081 kcal Electronic energy + Delta-G solvation = -24001.388187 eV Core-core repulsion = 20540.437470 eV Total energy + Delta-G solvation = -3460.950716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.14660 -39.08442 -36.62299 -36.13482 -34.41568 -32.77401 -32.43589 -32.12927 -30.02689 -28.94227 -27.27436 -25.72842 -24.09349 -22.42575 -21.79101 -21.41424 -20.93939 -18.42002 -16.98619 -16.81261 -16.38179 -16.04600 -15.86958 -14.90569 -14.49713 -14.17153 -13.75354 -13.64230 -13.37992 -13.22657 -12.94102 -12.87089 -12.63897 -12.36553 -12.24517 -11.88920 -11.71880 -11.46877 -11.29157 -11.24670 -11.10080 -10.79927 -10.79427 -10.44766 -10.22887 -9.81895 -9.47284 -9.37213 -9.28079 -8.69326 -8.32421 -7.70726 -7.45718 -7.44135 -4.88391 0.91988 1.44109 1.56247 1.77275 2.03468 2.79626 2.90463 2.94845 3.09701 3.50120 3.64081 3.96888 4.39184 4.64550 4.78331 5.04292 5.16902 5.26323 5.35662 5.46586 5.50520 5.57925 5.77939 5.87835 5.93827 5.98629 6.00173 6.10544 6.13947 6.32650 6.39134 6.49668 6.58531 6.68180 6.72480 6.84254 6.94217 7.03502 7.12675 7.29652 7.42692 7.56027 7.80931 8.03191 8.09292 8.22719 8.83328 9.51838 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.005133 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.577892 B = 5453.625185 C = 7430.886264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.166 3.834 3 N -0.485 5.485 4 C 0.171 3.829 5 Cl -0.050 7.050 6 C -0.164 4.164 7 C -0.028 4.028 8 C -0.045 4.045 9 C 0.132 3.868 10 N -0.441 5.441 11 C 0.018 3.982 12 C -0.051 4.051 13 C -0.182 4.182 14 C -0.101 4.101 15 C -0.148 4.148 16 C -0.014 4.014 17 C -0.261 4.261 18 C 0.059 3.941 19 C -0.400 4.400 20 H 0.102 0.898 21 C 0.083 3.917 22 N -0.768 5.768 23 Si 0.915 3.085 24 H -0.264 1.264 25 H -0.242 1.242 26 H -0.285 1.285 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 1.431 -4.979 5.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.028 3.972 3 N -0.197 5.197 4 C 0.007 3.993 5 Cl -0.021 7.021 6 C -0.185 4.185 7 C -0.054 4.054 8 C -0.048 4.048 9 C -0.027 4.027 10 N -0.147 5.147 11 C -0.103 4.103 12 C -0.070 4.070 13 C -0.202 4.202 14 C -0.119 4.119 15 C -0.167 4.167 16 C -0.016 4.016 17 C -0.286 4.286 18 C 0.054 3.946 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.142 4.142 22 N -0.388 5.388 23 Si 0.740 3.260 24 H -0.189 1.189 25 H -0.165 1.165 26 H -0.212 1.212 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.160 0.840 31 H 0.168 0.832 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.378 2.853 -5.419 6.277 hybrid contribution 0.917 -2.007 0.681 2.309 sum -0.461 0.846 -4.738 4.835 Atomic orbital electron populations 1.20907 0.88178 1.04288 1.03414 1.21228 0.96820 0.85866 0.93295 1.66708 1.08116 1.30169 1.14711 1.21516 0.89975 0.86676 1.01163 1.98365 1.77328 1.29735 1.96706 1.21640 1.01286 0.90959 1.04625 1.21722 0.93450 0.97981 0.92268 1.19276 0.93155 0.92476 0.99943 1.20587 0.95994 0.93233 0.92870 1.67332 1.04801 1.20168 1.22361 1.19238 1.01377 0.91013 0.98652 1.20530 0.93790 0.96531 0.96133 1.20305 1.03418 0.95073 1.01385 1.20543 0.97878 0.98303 0.95222 1.20852 0.98843 0.97067 0.99941 1.19492 0.94704 0.93345 0.94088 1.21061 1.03245 1.00539 1.03725 1.19193 0.93050 0.91098 0.91289 1.19619 1.13919 0.96637 1.12478 0.87992 1.26355 0.92912 1.01512 0.93456 1.69646 1.21559 1.35402 1.12201 0.86205 0.77252 0.79801 0.82750 1.18930 1.16501 1.21239 0.90787 0.91009 0.88063 0.84018 0.83168 0.86505 0.87348 0.87522 0.87031 0.86610 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.66 36.01 0.35 -1.52 16 2 C 0.17 3.12 6.82 -82.16 -0.56 2.56 16 3 N -0.49 -8.92 10.24 -6.28 -0.06 -8.99 16 4 C 0.17 2.88 7.27 -17.36 -0.13 2.75 16 5 Cl -0.05 -0.71 29.10 -51.86 -1.51 -2.22 16 6 C -0.16 -2.60 9.86 -39.46 -0.39 -2.99 16 7 C -0.03 -0.49 8.31 -38.89 -0.32 -0.81 16 8 C -0.05 -0.89 4.97 -104.77 -0.52 -1.41 16 9 C 0.13 2.81 5.89 -80.60 -0.47 2.34 16 10 N -0.44 -9.31 8.03 -4.83 -0.04 -9.35 16 11 C 0.02 0.37 6.74 -82.94 -0.56 -0.19 16 12 C -0.05 -0.92 9.99 -39.45 -0.39 -1.31 16 13 C -0.18 -2.93 9.90 -39.96 -0.40 -3.32 16 14 C -0.10 -1.65 9.91 -40.00 -0.40 -2.05 16 15 C -0.15 -2.76 9.80 -39.37 -0.39 -3.14 16 16 C -0.01 -0.30 5.87 -104.97 -0.62 -0.92 16 17 C -0.26 -5.85 7.13 -38.11 -0.27 -6.12 16 18 C 0.06 1.35 5.29 -104.69 -0.55 0.79 16 19 C -0.40 -9.21 7.92 -37.90 -0.30 -9.51 16 20 H 0.10 2.46 7.03 -52.49 -0.37 2.09 16 21 C 0.08 1.85 5.40 -17.31 -0.09 1.76 16 22 N -0.77 -17.57 13.92 55.56 0.77 -16.80 16 23 Si 0.91 18.41 24.54 -169.99 -4.17 14.24 16 24 H -0.26 -5.23 6.59 56.52 0.37 -4.85 16 25 H -0.24 -5.10 6.96 56.52 0.39 -4.70 16 26 H -0.29 -5.50 7.11 56.52 0.40 -5.10 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.10 1.80 5.67 -51.93 -0.29 1.50 16 30 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 31 H 0.15 2.57 7.66 -52.49 -0.40 2.17 16 32 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.12 2.56 4.57 -52.49 -0.24 2.32 16 37 H 0.30 6.07 8.29 -40.82 -0.34 5.73 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -24.83 327.02 -9.53 -34.36 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.44 Total: 6.92 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -6.01 Total: -23.09 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.67 Total: -35.14 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.17 Total: 14.24 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.51 Total: -2.22 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -24.83 -9.53 -34.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245771156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.173 kcal (2) G-P(sol) polarization free energy of solvation -24.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds