Wall clock time and date at job start Tue Mar 31 2020 13:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31707 * 119.70774 * 2 1 4 4 C 1.32024 * 121.85532 * 180.02562 * 3 2 1 5 5 Cl 1.73603 * 119.47605 * 180.02562 * 4 3 2 6 6 C 1.38547 * 121.04859 * 0.02562 * 4 3 2 7 7 C 1.38270 * 119.29586 * 359.70389 * 6 4 3 8 8 C 1.39526 * 119.70986 * 180.02562 * 2 1 3 9 9 C 1.47921 * 120.54872 * 359.95592 * 8 2 1 10 10 N 1.31574 * 119.44175 * 53.70771 * 9 8 2 11 11 C 1.33652 * 121.74485 * 180.02562 * 10 9 8 12 12 C 1.40488 * 120.98903 * 180.02562 * 11 10 9 13 13 C 1.36251 * 119.70334 * 179.97438 * 12 11 10 14 14 C 1.39155 * 121.75883 * 359.97438 * 13 12 11 15 15 C 1.36133 * 121.46721 * 0.02562 * 14 13 12 16 16 C 1.40791 * 119.46312 * 359.97438 * 15 14 13 17 17 C 1.40026 * 121.39850 * 180.26508 * 16 15 14 18 18 C 1.40374 * 117.96221 * 180.21057 * 17 16 15 19 19 C 1.40846 * 120.41362 * 179.78386 * 18 17 16 20 20 H 1.08000 * 120.00213 * 207.28333 * 19 18 17 21 21 C 1.40090 * 119.99656 * 27.27795 * 19 18 17 22 22 N 1.30765 * 120.00323 * 200.31527 * 21 19 18 23 23 Si 1.86806 * 120.00183 * 20.32276 * 21 19 18 24 24 H 1.48497 * 109.46868 * 265.89744 * 23 21 19 25 25 H 1.48497 * 109.46895 * 25.89703 * 23 21 19 26 26 H 1.48497 * 109.47094 * 145.89748 * 23 21 19 27 27 H 1.09001 * 109.46878 * 264.21372 * 1 2 3 28 28 H 1.08992 * 109.47473 * 24.21805 * 1 2 3 29 29 H 1.09000 * 109.46901 * 144.22047 * 1 2 3 30 30 H 1.08005 * 120.35280 * 179.97438 * 6 4 3 31 31 H 1.07999 * 120.84511 * 180.27097 * 7 6 4 32 32 H 1.07997 * 120.14631 * 359.96643 * 12 11 10 33 33 H 1.07997 * 119.11665 * 180.02562 * 13 12 11 34 34 H 1.08002 * 119.26968 * 179.97438 * 14 13 12 35 35 H 1.08000 * 120.27153 * 179.97438 * 15 14 13 36 36 H 1.07997 * 121.01519 * 359.97438 * 17 16 15 37 37 H 0.96994 * 120.00202 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1597 1.1440 0.0000 4 6 3.4791 1.1934 -0.0005 5 17 4.2760 2.7357 0.0002 6 6 4.2376 0.0341 -0.0016 7 6 3.5990 -1.1923 0.0041 8 6 2.1985 -1.2118 -0.0005 9 6 1.4647 -2.4962 -0.0001 10 7 0.5544 -2.7212 -0.9231 11 6 -0.1361 -3.8648 -0.9657 12 6 -1.1043 -4.0886 -1.9587 13 6 -1.7926 -5.2643 -1.9779 14 6 -1.5644 -6.2620 -1.0350 15 6 -0.6405 -6.1083 -0.0471 16 6 0.1033 -4.9151 0.0258 17 6 1.0675 -4.7162 1.0216 18 6 1.7639 -3.4974 1.0295 19 6 2.7414 -3.2411 2.0105 20 1 2.9556 -2.2249 2.3069 21 6 3.4359 -4.3043 2.6019 22 7 4.0323 -4.1359 3.7533 23 14 3.5101 -5.9629 1.7455 24 1 2.4193 -6.8322 2.2550 25 1 3.3480 -5.7718 0.2818 26 1 4.8218 -6.6029 2.0189 27 1 -0.3633 -0.1036 1.0225 28 1 -0.3634 0.9371 -0.4215 29 1 -0.3633 -0.8337 -0.6008 30 1 5.3163 0.0877 -0.0024 31 1 4.1657 -2.1117 0.0078 32 1 -1.3022 -3.3320 -2.7036 33 1 -2.5345 -5.4265 -2.7457 34 1 -2.1334 -7.1784 -1.0877 35 1 -0.4794 -6.8951 0.6749 36 1 1.2665 -5.4757 1.7631 37 1 4.5135 -4.8720 4.1626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245771156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:16 Heat of formation + Delta-G solvation = 53.763168 kcal Electronic energy + Delta-G solvation = -24001.867390 eV Core-core repulsion = 20540.437470 eV Total energy + Delta-G solvation = -3461.429920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57465 -40.56916 -37.98513 -37.50861 -36.04194 -34.20407 -33.95093 -33.56758 -31.55185 -30.39081 -28.65349 -27.32177 -25.53730 -23.96134 -23.25824 -22.82083 -22.45849 -20.01108 -18.44943 -18.29478 -17.86950 -17.44365 -17.33935 -16.41931 -15.90919 -15.59366 -15.29453 -15.06801 -14.91272 -14.64450 -14.46292 -14.30556 -14.04700 -13.81846 -13.80852 -13.25573 -13.09289 -13.01278 -12.86547 -12.58149 -12.34708 -12.23043 -12.18282 -11.97572 -11.80163 -11.47458 -10.88390 -10.85809 -10.76016 -10.19853 -9.79710 -9.27108 -9.12316 -8.91388 -6.58971 -0.53574 -0.01045 0.14283 0.26910 0.73592 1.18010 1.29160 1.33101 1.48962 1.98957 2.02572 2.55546 2.78839 3.23877 3.36621 3.48277 3.77732 3.86747 3.91846 4.07574 4.19196 4.21740 4.37431 4.48650 4.48992 4.55868 4.65637 4.72735 4.73844 4.86446 4.94006 5.09646 5.16882 5.18585 5.28345 5.38766 5.44603 5.55904 5.71781 5.75771 5.81403 6.07570 6.14018 6.43971 6.53532 6.67208 7.22774 7.90820 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.005133 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.577892 B = 5453.625185 C = 7430.886264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.156 3.844 3 N -0.497 5.497 4 C 0.164 3.836 5 Cl -0.024 7.024 6 C -0.155 4.155 7 C -0.034 4.034 8 C -0.067 4.067 9 C 0.123 3.877 10 N -0.445 5.445 11 C 0.001 3.999 12 C -0.067 4.067 13 C -0.160 4.160 14 C -0.089 4.089 15 C -0.164 4.164 16 C -0.040 4.040 17 C -0.274 4.274 18 C 0.047 3.953 19 C -0.423 4.423 20 H 0.078 0.922 21 C 0.062 3.938 22 N -0.803 5.803 23 Si 0.957 3.043 24 H -0.260 1.260 25 H -0.261 1.261 26 H -0.270 1.270 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.174 0.826 31 H 0.149 0.851 32 H 0.135 0.865 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 0.555 -6.843 7.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.017 3.983 3 N -0.209 5.209 4 C 0.000 4.000 5 Cl 0.004 6.996 6 C -0.175 4.175 7 C -0.061 4.061 8 C -0.070 4.070 9 C -0.035 4.035 10 N -0.151 5.151 11 C -0.120 4.120 12 C -0.085 4.085 13 C -0.180 4.180 14 C -0.107 4.107 15 C -0.183 4.183 16 C -0.042 4.042 17 C -0.299 4.299 18 C 0.042 3.958 19 C -0.450 4.450 20 H 0.096 0.904 21 C -0.159 4.159 22 N -0.425 5.425 23 Si 0.781 3.219 24 H -0.185 1.185 25 H -0.185 1.185 26 H -0.196 1.196 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.191 0.809 31 H 0.167 0.833 32 H 0.153 0.847 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.708 1.983 -7.275 8.012 hybrid contribution 1.118 -1.737 1.046 2.315 sum -1.590 0.247 -6.229 6.433 Atomic orbital electron populations 1.20854 0.87327 1.04716 1.03237 1.21410 0.97593 0.85783 0.93487 1.66768 1.08975 1.29887 1.15235 1.21852 0.89800 0.88081 1.00282 1.98371 1.76659 1.28004 1.96516 1.21922 1.02779 0.89848 1.02997 1.21826 0.93046 0.98887 0.92291 1.19357 0.93930 0.92168 1.01582 1.20771 0.96299 0.93787 0.92634 1.67410 1.04953 1.20507 1.22229 1.19807 1.01982 0.90859 0.99380 1.20843 0.93523 0.98155 0.95998 1.20855 1.02358 0.93539 1.01233 1.21046 0.96463 0.99706 0.93486 1.21111 0.99367 0.96443 1.01363 1.19811 0.95226 0.94914 0.94257 1.21187 1.03915 1.00508 1.04327 1.19355 0.93084 0.91830 0.91556 1.19412 1.15685 0.95777 1.14174 0.90361 1.26748 0.92484 1.03126 0.93589 1.69648 1.23257 1.36545 1.13082 0.85582 0.77905 0.77744 0.80709 1.18533 1.18473 1.19622 0.90926 0.89287 0.89051 0.80854 0.83308 0.84730 0.83139 0.83363 0.85851 0.86970 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.56 9.66 71.24 0.69 -2.87 16 2 C 0.16 5.94 6.82 42.89 0.29 6.23 16 3 N -0.50 -18.21 10.24 -173.77 -1.78 -19.98 16 4 C 0.16 5.42 7.27 84.74 0.62 6.04 16 5 Cl -0.02 -0.65 29.10 -2.72 -0.08 -0.73 16 6 C -0.15 -4.85 9.86 22.35 0.22 -4.63 16 7 C -0.03 -1.24 8.31 22.72 0.19 -1.05 16 8 C -0.07 -2.73 4.97 -19.96 -0.10 -2.83 16 9 C 0.12 5.45 5.89 43.96 0.26 5.71 16 10 N -0.44 -19.06 8.03 -169.19 -1.36 -20.42 16 11 C 0.00 0.03 6.74 41.54 0.28 0.31 16 12 C -0.07 -2.22 9.99 22.36 0.22 -1.99 16 13 C -0.16 -4.40 9.90 22.03 0.22 -4.18 16 14 C -0.09 -2.51 9.91 22.00 0.22 -2.30 16 15 C -0.16 -5.75 9.80 22.40 0.22 -5.53 16 16 C -0.04 -1.70 5.87 -20.09 -0.12 -1.82 16 17 C -0.27 -12.61 7.13 23.22 0.17 -12.45 16 18 C 0.05 2.23 5.29 -19.91 -0.11 2.12 16 19 C -0.42 -20.60 7.92 23.36 0.19 -20.41 16 20 H 0.08 4.07 7.03 -2.91 -0.02 4.05 16 21 C 0.06 2.90 5.40 85.30 0.46 3.36 16 22 N -0.80 -38.16 13.92 21.85 0.30 -37.86 16 23 Si 0.96 38.73 24.54 68.60 1.68 40.41 16 24 H -0.26 -10.20 6.59 99.48 0.66 -9.54 16 25 H -0.26 -11.21 6.96 99.48 0.69 -10.51 16 26 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.09 3.29 5.67 -2.39 -0.01 3.28 16 30 H 0.17 4.19 8.06 -2.91 -0.02 4.16 16 31 H 0.15 5.37 7.66 -2.91 -0.02 5.35 16 32 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 33 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 34 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 36 H 0.11 5.09 4.57 -2.91 -0.01 5.08 16 37 H 0.30 12.86 8.29 -92.71 -0.77 12.09 16 Total: -1.00 -55.25 327.02 3.74 -51.50 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 1.06 Total: 23.36 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 3.91 Total: -36.29 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -2.83 Total: -78.26 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 1.68 Total: 40.41 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -55.25 3.74 -51.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245771156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.267 kcal (2) G-P(sol) polarization free energy of solvation -55.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds