Wall clock time and date at job start Tue Mar 31 2020 13:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48502 * 109.47385 * 240.00121 * 3 2 1 5 5 H 1.48505 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47389 * 119.99888 * 3 2 1 7 7 C 1.38647 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00035 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.35674 * 116.99686 * 185.06145 * 9 7 2 11 11 C 1.38701 * 120.12092 * 354.39688 * 10 9 7 12 12 C 1.38343 * 120.02063 * 180.27228 * 11 10 9 13 13 F 1.35105 * 119.85595 * 179.72200 * 12 11 10 14 14 C 1.38664 * 120.27988 * 359.70682 * 12 11 10 15 15 C 1.37980 * 120.24549 * 0.02562 * 14 12 11 16 16 C 1.39314 * 119.96795 * 0.02562 * 15 14 12 17 17 C 1.48241 * 120.13574 * 179.97438 * 16 15 14 18 18 C 1.39596 * 120.15254 * 89.99907 * 17 16 15 19 19 F 1.35106 * 120.07212 * 0.02562 * 18 17 16 20 20 C 1.38223 * 119.85022 * 179.97438 * 18 17 16 21 21 C 1.38324 * 120.14703 * 0.02562 * 20 18 17 22 22 C 1.38278 * 120.31017 * 359.97438 * 21 20 18 23 23 C 1.50698 * 119.92980 * 179.97438 * 22 21 20 24 24 O 1.42903 * 109.46794 * 0.02562 * 23 22 21 25 25 C 1.38269 * 120.14805 * 0.25683 * 22 21 20 26 26 F 1.35099 * 120.07505 * 179.72463 * 25 22 21 27 27 H 0.96993 * 120.00043 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.98962 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.88240 * 180.02562 * 14 12 11 30 30 H 1.08001 * 120.02047 * 179.97438 * 15 14 12 31 31 H 1.07998 * 119.92385 * 179.97438 * 20 18 17 32 32 H 1.08005 * 119.84287 * 179.97438 * 21 20 18 33 33 H 1.08997 * 109.47872 * 240.00646 * 23 22 21 34 34 H 1.09001 * 109.47345 * 120.00123 * 23 22 21 35 35 H 0.96701 * 114.00186 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3682 0.0005 10 6 2.0697 -3.5036 0.1077 11 6 3.4552 -3.4399 0.0941 12 6 4.2025 -4.5995 0.1979 13 9 5.5518 -4.5342 0.1786 14 6 3.5724 -5.8285 0.3219 15 6 2.1949 -5.9045 0.3423 16 6 1.4323 -4.7433 0.2374 17 6 -0.0479 -4.8206 0.2583 18 6 -0.7372 -4.7416 1.4697 19 9 -0.0567 -4.5937 2.6274 20 6 -2.1175 -4.8138 1.4818 21 6 -2.8157 -4.9647 0.2973 22 6 -2.1394 -5.0437 -0.9062 23 6 -2.9086 -5.2086 -2.1916 24 8 -4.3081 -5.2561 -1.9063 25 6 -0.7585 -4.9776 -0.9325 26 9 -0.0990 -5.0605 -2.1086 27 1 -0.4850 0.8400 -0.0004 28 1 3.9507 -2.4853 -0.0024 29 1 4.1621 -6.7298 0.4029 30 1 1.7080 -6.8637 0.4386 31 1 -2.6519 -4.7532 2.4183 32 1 -3.8942 -5.0210 0.3125 33 1 -2.6055 -6.1345 -2.6803 34 1 -2.7009 -4.3652 -2.8501 35 1 -4.8658 -5.3609 -2.6893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245851833.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:00 Heat of formation + Delta-G solvation = -159.916895 kcal Electronic energy + Delta-G solvation = -27235.646599 eV Core-core repulsion = 22750.092160 eV Total energy + Delta-G solvation = -4485.554439 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.57888 -48.46365 -48.35683 -39.38074 -38.54468 -36.70703 -36.24722 -32.48806 -32.10030 -30.84999 -29.47551 -28.10676 -25.74528 -25.52728 -23.25004 -21.98552 -21.72446 -20.60083 -18.35207 -17.98863 -17.66210 -17.39524 -16.32663 -16.12802 -15.86716 -15.33186 -15.26888 -15.09591 -15.04221 -14.90168 -14.63695 -14.51354 -14.30602 -13.95994 -13.63446 -13.42616 -13.31470 -12.97580 -12.52192 -12.11661 -12.07225 -11.70318 -11.52350 -11.37683 -11.16455 -10.90902 -10.79341 -10.78284 -10.55124 -10.29328 -9.69580 -8.97090 -8.45972 -8.23233 -8.18353 -7.47951 -6.58611 -4.18658 1.27798 1.35171 1.73696 2.09606 3.07176 3.08592 3.11062 3.63005 3.85418 3.99443 4.20278 4.31330 4.72169 4.78203 4.87463 4.93569 4.97865 5.13860 5.18815 5.27262 5.43504 5.47527 5.54448 5.67767 6.01917 6.06086 6.19536 6.27310 6.31374 6.36996 6.45467 6.64839 6.77122 6.85374 6.94753 7.10516 7.20705 7.50768 7.55496 7.83391 8.84945 9.47869 10.57312 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009402 B = 0.005871 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.342999 B = 4767.966884 C = 6428.675587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.046 3.954 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.399 4.399 8 H 0.095 0.905 9 O -0.153 6.153 10 C 0.195 3.805 11 C -0.270 4.270 12 C 0.151 3.849 13 F -0.150 7.150 14 C -0.249 4.249 15 C -0.022 4.022 16 C -0.152 4.152 17 C -0.073 4.073 18 C 0.147 3.853 19 F -0.126 7.126 20 C -0.168 4.168 21 C -0.045 4.045 22 C -0.144 4.144 23 C 0.126 3.874 24 O -0.568 6.568 25 C 0.149 3.851 26 F -0.126 7.126 27 H 0.273 0.727 28 H 0.143 0.857 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 -10.134 -1.859 11.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.474 4.474 8 H 0.112 0.888 9 O -0.054 6.054 10 C 0.138 3.862 11 C -0.290 4.290 12 C 0.132 3.868 13 F -0.128 7.128 14 C -0.269 4.269 15 C -0.040 4.040 16 C -0.154 4.154 17 C -0.074 4.074 18 C 0.128 3.872 19 F -0.104 7.104 20 C -0.187 4.187 21 C -0.063 4.063 22 C -0.145 4.145 23 C 0.049 3.951 24 O -0.374 6.374 25 C 0.129 3.871 26 F -0.104 7.104 27 H 0.083 0.917 28 H 0.160 0.840 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.150 -9.801 -1.277 11.145 hybrid contribution 0.949 0.949 -0.584 1.463 sum -4.201 -8.852 -1.861 9.974 Atomic orbital electron populations 1.70034 1.05980 1.28182 1.44080 1.25325 0.95882 0.98921 0.95942 0.85759 0.78800 0.79397 0.79439 1.19295 1.20076 1.19250 1.21359 0.91964 0.80539 1.53555 0.88805 1.83988 1.34054 1.11340 1.76036 1.18912 0.89012 0.87450 0.90844 1.20969 0.93919 0.98430 1.15686 1.17521 0.75857 0.94343 0.99103 1.91424 1.30177 1.97380 1.93844 1.20413 0.94732 0.95871 1.15879 1.20465 0.92357 0.96169 0.95039 1.17406 0.89802 0.91585 1.16616 1.18347 0.93463 1.04857 0.90767 1.17469 0.89395 0.99354 0.81024 1.91512 1.80293 1.92561 1.46079 1.21069 0.91822 1.05714 1.00130 1.20576 1.00618 0.95569 0.89558 1.19526 0.91077 1.07325 0.96576 1.20670 0.80610 1.00584 0.93247 1.86402 1.16714 1.97002 1.37240 1.17072 0.88349 1.00872 0.80779 1.91491 1.81265 1.93156 1.44527 0.91660 0.83992 0.85909 0.85824 0.84298 0.83560 0.92127 0.91747 0.77013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.23 13.67 55.48 0.76 -23.47 16 2 C 0.05 1.23 5.49 -17.52 -0.10 1.13 16 3 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.40 -10.95 9.49 30.88 0.29 -10.65 16 8 H 0.09 2.40 5.21 -52.49 -0.27 2.12 16 9 O -0.15 -4.28 9.21 0.33 0.00 -4.28 16 10 C 0.19 4.72 6.65 -38.75 -0.26 4.47 16 11 C -0.27 -6.06 9.14 -39.37 -0.36 -6.42 16 12 C 0.15 3.02 7.29 -39.39 -0.29 2.73 16 13 F -0.15 -2.84 17.26 2.25 0.04 -2.80 16 14 C -0.25 -4.47 10.01 -39.52 -0.40 -4.87 16 15 C -0.02 -0.40 9.77 -39.28 -0.38 -0.78 16 16 C -0.15 -3.26 4.61 -104.73 -0.48 -3.74 16 17 C -0.07 -1.47 4.84 -104.79 -0.51 -1.98 16 18 C 0.15 2.81 7.28 -39.08 -0.28 2.53 16 19 F -0.13 -2.53 16.82 2.25 0.04 -2.49 16 20 C -0.17 -2.68 10.01 -39.56 -0.40 -3.08 16 21 C -0.05 -0.68 9.37 -39.54 -0.37 -1.05 16 22 C -0.14 -2.32 5.88 -104.60 -0.62 -2.93 16 23 C 0.13 1.59 7.01 36.00 0.25 1.84 16 24 O -0.57 -6.20 12.13 -35.23 -0.43 -6.62 16 25 C 0.15 2.80 7.22 -39.08 -0.28 2.52 16 26 F -0.13 -2.41 16.35 2.25 0.04 -2.38 16 27 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.14 3.17 5.64 -52.49 -0.30 2.88 16 29 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 31 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.15 1.91 6.99 -52.48 -0.37 1.54 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.38 2.19 9.12 45.56 0.42 2.61 16 LS Contribution 326.09 15.07 4.91 4.91 Total: -1.00 -31.51 326.09 -5.60 -37.12 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -1.77 Total: 5.15 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -4.17 Total: -20.29 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.76 Total: -23.47 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.42 Total: -10.91 kcal Atomic # 9 Polarization: -7.79 SS G_CDS: 0.11 Total: -7.67 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.51 -5.60 -37.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245851833.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.799 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds