Wall clock time and date at job start Tue Mar 31 2020 13:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48502 * 109.47385 * 240.00121 * 3 2 1 5 5 H 1.48505 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47389 * 119.99888 * 3 2 1 7 7 C 1.38647 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00035 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.35674 * 116.99686 * 185.06145 * 9 7 2 11 11 C 1.38701 * 120.12092 * 354.39688 * 10 9 7 12 12 C 1.38343 * 120.02063 * 180.27228 * 11 10 9 13 13 F 1.35105 * 119.85595 * 179.72200 * 12 11 10 14 14 C 1.38664 * 120.27988 * 359.70682 * 12 11 10 15 15 C 1.37980 * 120.24549 * 0.02562 * 14 12 11 16 16 C 1.39314 * 119.96795 * 0.02562 * 15 14 12 17 17 C 1.48241 * 120.13574 * 179.97438 * 16 15 14 18 18 C 1.39596 * 120.15254 * 89.99907 * 17 16 15 19 19 F 1.35106 * 120.07212 * 0.02562 * 18 17 16 20 20 C 1.38223 * 119.85022 * 179.97438 * 18 17 16 21 21 C 1.38324 * 120.14703 * 0.02562 * 20 18 17 22 22 C 1.38278 * 120.31017 * 359.97438 * 21 20 18 23 23 C 1.50698 * 119.92980 * 179.97438 * 22 21 20 24 24 O 1.42903 * 109.46794 * 0.02562 * 23 22 21 25 25 C 1.38269 * 120.14805 * 0.25683 * 22 21 20 26 26 F 1.35099 * 120.07505 * 179.72463 * 25 22 21 27 27 H 0.96993 * 120.00043 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.98962 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.88240 * 180.02562 * 14 12 11 30 30 H 1.08001 * 120.02047 * 179.97438 * 15 14 12 31 31 H 1.07998 * 119.92385 * 179.97438 * 20 18 17 32 32 H 1.08005 * 119.84287 * 179.97438 * 21 20 18 33 33 H 1.08997 * 109.47872 * 240.00646 * 23 22 21 34 34 H 1.09001 * 109.47345 * 120.00123 * 23 22 21 35 35 H 0.96701 * 114.00186 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3682 0.0005 10 6 2.0697 -3.5036 0.1077 11 6 3.4552 -3.4399 0.0941 12 6 4.2025 -4.5995 0.1979 13 9 5.5518 -4.5342 0.1786 14 6 3.5724 -5.8285 0.3219 15 6 2.1949 -5.9045 0.3423 16 6 1.4323 -4.7433 0.2374 17 6 -0.0479 -4.8206 0.2583 18 6 -0.7372 -4.7416 1.4697 19 9 -0.0567 -4.5937 2.6274 20 6 -2.1175 -4.8138 1.4818 21 6 -2.8157 -4.9647 0.2973 22 6 -2.1394 -5.0437 -0.9062 23 6 -2.9086 -5.2086 -2.1916 24 8 -4.3081 -5.2561 -1.9063 25 6 -0.7585 -4.9776 -0.9325 26 9 -0.0990 -5.0605 -2.1086 27 1 -0.4850 0.8400 -0.0004 28 1 3.9507 -2.4853 -0.0024 29 1 4.1621 -6.7298 0.4029 30 1 1.7080 -6.8637 0.4386 31 1 -2.6519 -4.7532 2.4183 32 1 -3.8942 -5.0210 0.3125 33 1 -2.6055 -6.1345 -2.6803 34 1 -2.7009 -4.3652 -2.8501 35 1 -4.8658 -5.3609 -2.6893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245851833.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:59 Heat of formation + Delta-G solvation = -179.783330 kcal Electronic energy + Delta-G solvation = -27236.508072 eV Core-core repulsion = 22750.092160 eV Total energy + Delta-G solvation = -4486.415912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.02256 -49.95333 -49.94121 -41.04126 -39.90380 -38.21112 -37.43216 -34.40405 -33.57025 -32.10089 -31.13822 -29.65945 -27.46765 -26.88298 -24.71365 -23.67118 -23.12780 -22.05518 -20.18219 -19.40211 -19.19686 -18.73020 -17.60503 -17.52953 -17.35164 -17.06713 -16.78191 -16.65092 -16.47118 -16.35143 -16.02145 -15.92735 -15.60732 -15.48633 -15.37181 -15.17660 -14.87805 -14.17580 -14.09522 -13.69992 -13.48982 -13.40608 -12.94039 -12.84828 -12.50366 -12.43698 -12.32104 -12.25359 -12.18848 -11.58719 -11.21372 -10.87861 -9.84671 -9.82960 -9.54591 -9.21353 -8.54853 -6.24549 -0.06872 -0.01652 0.09079 0.44606 1.31384 1.41293 1.46826 2.10584 2.29413 2.50973 2.87966 2.96465 3.11929 3.14213 3.35867 3.40939 3.56606 3.78899 3.90251 3.98433 4.11272 4.13337 4.34165 4.39732 4.47680 4.69804 4.81609 4.87606 4.92997 4.96903 5.03357 5.12535 5.17175 5.21374 5.28787 5.41328 5.77176 5.88986 5.93905 6.87540 6.90692 7.59309 8.65620 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009402 B = 0.005871 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.342999 B = 4767.966884 C = 6428.675587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.009 4.009 3 Si 1.014 2.986 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.425 4.425 8 H 0.099 0.901 9 O -0.199 6.199 10 C 0.163 3.837 11 C -0.285 4.285 12 C 0.145 3.855 13 F -0.142 7.142 14 C -0.219 4.219 15 C -0.019 4.019 16 C -0.155 4.155 17 C -0.099 4.099 18 C 0.118 3.882 19 F -0.140 7.140 20 C -0.157 4.157 21 C -0.040 4.040 22 C -0.141 4.141 23 C 0.131 3.869 24 O -0.575 6.575 25 C 0.126 3.874 26 F -0.135 7.135 27 H 0.276 0.724 28 H 0.132 0.868 29 H 0.167 0.833 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.175 0.825 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.336 -11.982 -1.959 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.209 4.209 3 Si 0.833 3.167 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.500 4.500 8 H 0.116 0.884 9 O -0.104 6.104 10 C 0.110 3.890 11 C -0.305 4.305 12 C 0.125 3.875 13 F -0.120 7.120 14 C -0.238 4.238 15 C -0.037 4.037 16 C -0.157 4.157 17 C -0.101 4.101 18 C 0.098 3.902 19 F -0.118 7.118 20 C -0.176 4.176 21 C -0.058 4.058 22 C -0.142 4.142 23 C 0.053 3.947 24 O -0.384 6.384 25 C 0.107 3.893 26 F -0.113 7.113 27 H 0.085 0.915 28 H 0.149 0.851 29 H 0.185 0.815 30 H 0.181 0.819 31 H 0.187 0.813 32 H 0.192 0.808 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -5.452 -11.705 -1.393 12.987 hybrid contribution 1.068 1.189 -0.553 1.691 sum -4.384 -10.517 -1.946 11.559 Atomic orbital electron populations 1.70161 1.07769 1.29128 1.46850 1.26505 0.96836 1.02383 0.95210 0.84724 0.77603 0.74505 0.79912 1.18229 1.19104 1.18358 1.21779 0.92497 0.81329 1.54428 0.88359 1.83970 1.35118 1.12128 1.79152 1.19457 0.89905 0.87787 0.91897 1.21030 0.93746 0.99264 1.16440 1.17595 0.76169 0.94360 0.99328 1.91443 1.29461 1.97367 1.93767 1.20943 0.94889 0.96391 1.11565 1.20978 0.92543 0.96748 0.93419 1.17881 0.91239 0.91470 1.15101 1.18514 0.93153 1.06481 0.91944 1.17780 0.90663 1.01321 0.80401 1.91466 1.80784 1.92966 1.46621 1.21451 0.90570 1.03610 1.01922 1.20955 1.01832 0.94189 0.88793 1.19986 0.90331 1.05187 0.98708 1.20599 0.81387 1.01511 0.91183 1.86328 1.15894 1.97027 1.39169 1.17279 0.89484 1.02457 0.80130 1.91455 1.81632 1.93431 1.44832 0.91521 0.85055 0.81544 0.81936 0.81310 0.80781 0.89871 0.92134 0.74201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.05 13.67 21.61 0.30 -53.75 16 2 C -0.01 -0.52 5.49 84.83 0.47 -0.06 16 3 Si 1.01 42.63 29.55 68.60 2.03 44.65 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 7 C -0.42 -24.68 9.49 67.92 0.64 -24.03 16 8 H 0.10 5.33 5.21 -2.91 -0.02 5.32 16 9 O -0.20 -11.86 9.21 -21.73 -0.20 -12.06 16 10 C 0.16 8.24 6.65 22.81 0.15 8.40 16 11 C -0.28 -13.16 9.14 22.41 0.20 -12.95 16 12 C 0.14 5.63 7.29 22.40 0.16 5.79 16 13 F -0.14 -5.15 17.26 44.97 0.78 -4.38 16 14 C -0.22 -7.18 10.01 22.31 0.22 -6.96 16 15 C -0.02 -0.66 9.77 22.47 0.22 -0.44 16 16 C -0.16 -6.73 4.61 -19.93 -0.09 -6.82 16 17 C -0.10 -4.08 4.84 -19.97 -0.10 -4.18 16 18 C 0.12 4.54 7.28 22.59 0.16 4.71 16 19 F -0.14 -5.74 16.82 44.97 0.76 -4.98 16 20 C -0.16 -4.81 10.01 22.29 0.22 -4.59 16 21 C -0.04 -1.13 9.37 22.30 0.21 -0.92 16 22 C -0.14 -4.38 5.88 -19.85 -0.12 -4.50 16 23 C 0.13 3.03 7.01 71.24 0.50 3.53 16 24 O -0.57 -10.79 12.13 -148.98 -1.81 -12.60 16 25 C 0.13 4.76 7.22 22.59 0.16 4.92 16 26 F -0.14 -5.25 16.35 44.97 0.74 -4.51 16 27 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.13 6.20 5.64 -2.91 -0.02 6.18 16 29 H 0.17 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.16 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.17 4.03 8.06 -2.91 -0.02 4.00 16 32 H 0.17 3.96 6.99 -2.91 -0.02 3.94 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.41 3.33 9.12 -74.06 -0.68 2.66 16 Total: -1.00 -73.21 326.09 6.12 -67.09 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.51 Total: 18.63 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 3.03 Total: -38.10 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.30 Total: -53.75 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -2.01 Total: -24.65 kcal Atomic # 9 Polarization: -16.14 SS G_CDS: 2.27 Total: -13.87 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -73.21 6.12 -67.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245851833.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.695 kcal (2) G-P(sol) polarization free energy of solvation -73.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds