Wall clock time and date at job start Tue Mar 31 2020 14:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47173 * 299.99471 * 3 2 1 6 6 H 1.48498 * 109.47243 * 59.99961 * 3 2 1 7 7 C 1.37878 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47805 * 86.03824 * 90.88256 * 10 9 7 12 12 C 1.34776 * 134.45584 * 204.64698 * 11 10 9 13 13 S 1.71205 * 120.00137 * 179.86747 * 12 11 10 14 14 N 1.34776 * 120.00289 * 359.86435 * 12 11 10 15 15 C 1.46495 * 120.00457 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47291 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.47125 * 179.97438 * 16 15 14 18 18 C 1.38239 * 119.98793 * 269.72896 * 17 16 15 19 19 C 1.38215 * 120.00949 * 179.72806 * 18 17 16 20 20 C 1.38344 * 119.98890 * 0.54028 * 19 18 17 21 21 Cl 1.73603 * 120.01483 * 179.70421 * 20 19 18 22 22 C 1.38353 * 119.97581 * 359.73280 * 20 19 18 23 23 C 1.38215 * 119.98364 * 359.97438 * 22 20 19 24 24 C 1.47582 * 91.05413 * 24.54887 * 11 10 9 25 25 H 0.96999 * 119.99516 * 0.02562 * 1 2 3 26 26 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 27 27 H 1.08999 * 113.76704 * 205.15033 * 10 9 7 28 28 H 1.09002 * 113.76463 * 336.53826 * 10 9 7 29 29 H 0.97009 * 119.99409 * 0.02562 * 14 12 11 30 30 H 1.09001 * 109.46877 * 299.99639 * 15 14 12 31 31 H 1.09001 * 109.47402 * 59.99458 * 15 14 12 32 32 H 1.09001 * 109.46881 * 299.99657 * 16 15 14 33 33 H 1.08997 * 109.47051 * 60.00116 * 16 15 14 34 34 H 1.08003 * 119.99497 * 359.97438 * 18 17 16 35 35 H 1.08010 * 120.00443 * 180.26915 * 19 18 17 36 36 H 1.07996 * 120.01155 * 179.97438 * 22 20 19 37 37 H 1.08000 * 119.99550 * 179.97438 * 23 22 20 38 38 H 1.08999 * 113.77186 * 221.15323 * 24 11 10 39 39 H 1.09004 * 113.76624 * 89.74800 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7561 -2.9292 -1.3924 11 7 2.0418 -3.6480 -1.5144 12 6 2.8015 -4.0542 -2.5509 13 16 4.2725 -4.8810 -2.2618 14 7 2.4033 -3.8096 -3.8150 15 6 3.2287 -4.2515 -4.9416 16 6 2.5542 -3.8523 -6.2556 17 6 3.4037 -4.3064 -7.4146 18 6 4.3729 -3.4671 -7.9315 19 6 5.1561 -3.8853 -8.9908 20 6 4.9624 -5.1398 -9.5410 21 17 5.9406 -5.6627 -10.8765 22 6 3.9885 -5.9772 -9.0269 23 6 3.2100 -5.5603 -7.9637 24 6 2.1608 -3.7402 -0.0462 25 1 -0.4849 0.8401 -0.0004 26 1 0.4833 -2.5466 0.7730 27 1 -0.1136 -3.5857 -1.3663 28 1 0.6454 -2.1022 -2.0938 29 1 1.5699 -3.3408 -3.9787 30 1 4.2102 -3.7816 -4.8792 31 1 3.3418 -5.3351 -4.9062 32 1 1.5729 -4.3226 -6.3178 33 1 2.4409 -2.7688 -6.2913 34 1 4.5209 -2.4860 -7.5049 35 1 5.9163 -3.2311 -9.3918 36 1 3.8365 -6.9564 -9.4563 37 1 2.4493 -6.2137 -7.5625 38 1 3.1695 -3.5596 0.3250 39 1 1.7045 -4.6355 0.3761 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249751050.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:23 Heat of formation + Delta-G solvation = 54.609490 kcal Electronic energy + Delta-G solvation = -21418.150230 eV Core-core repulsion = 18092.200961 eV Total energy + Delta-G solvation = -3325.949269 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.86131 -39.36807 -37.22753 -36.64415 -33.62440 -32.65485 -31.39480 -30.20912 -27.97083 -25.85806 -25.44285 -23.57614 -23.18474 -22.28626 -21.29166 -19.38970 -17.58166 -17.24633 -16.92412 -16.58061 -16.14383 -15.51976 -15.16929 -14.86947 -14.65147 -14.41263 -13.86504 -13.82396 -13.74735 -13.21277 -12.74015 -12.51425 -12.34577 -12.12580 -11.77637 -11.71797 -11.51887 -11.27397 -11.14981 -11.07635 -10.99662 -10.70804 -10.44608 -10.41577 -9.68443 -9.42366 -9.36232 -8.89356 -8.76863 -8.35001 -7.18005 -6.99913 -6.34731 -4.39385 0.78055 0.97194 1.82380 2.09178 2.44260 3.03927 3.13774 3.23606 3.30091 3.30808 3.70828 4.21392 4.39797 4.50688 4.57421 4.79679 4.80293 4.94607 4.99510 5.16528 5.25036 5.45491 5.59500 5.62778 5.75450 5.80751 5.85997 5.89705 5.90559 5.94562 6.03070 6.16460 6.22896 6.27421 6.46141 6.58237 6.92293 7.19666 7.27176 7.63706 8.01203 8.08801 8.66816 9.28487 10.74840 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.017762 B = 0.002406 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.987250 B =11634.000380 C =12351.630643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.039 3.961 10 C 0.080 3.920 11 N -0.573 5.573 12 C 0.596 3.404 13 S -0.708 6.708 14 N -0.698 5.698 15 C 0.138 3.862 16 C -0.097 4.097 17 C -0.070 4.070 18 C -0.098 4.098 19 C -0.108 4.108 20 C -0.037 4.037 21 Cl -0.075 7.075 22 C -0.109 4.109 23 C -0.099 4.099 24 C 0.114 3.886 25 H 0.265 0.735 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.396 0.604 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -7.520 -17.966 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.019 3.981 10 C -0.045 4.045 11 N -0.279 5.279 12 C 0.235 3.765 13 S -0.581 6.581 14 N -0.330 5.330 15 C 0.014 3.986 16 C -0.135 4.135 17 C -0.071 4.071 18 C -0.117 4.117 19 C -0.127 4.127 20 C -0.064 4.064 21 Cl -0.046 7.046 22 C -0.127 4.127 23 C -0.118 4.118 24 C -0.007 4.007 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.232 0.768 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.107 0.893 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.167 -8.024 -18.039 19.862 hybrid contribution -0.658 1.482 -0.562 1.717 sum 1.509 -6.542 -18.602 19.776 Atomic orbital electron populations 1.69944 1.05981 1.27240 1.49219 1.24998 0.94909 0.99489 0.94228 0.86455 0.80435 0.83016 0.77794 1.19419 1.20924 1.20640 1.20851 0.93143 0.88993 1.51518 0.91747 1.20438 0.94056 0.91863 0.91719 1.24136 0.83437 0.93479 1.03486 1.49522 1.21548 1.50212 1.06640 1.21567 0.90991 0.82897 0.81082 1.93157 1.14676 1.57565 1.92703 1.44691 1.25468 1.59293 1.03561 1.21493 0.94357 1.01445 0.81311 1.20856 0.98471 1.02552 0.91584 1.19713 0.96656 0.94301 0.96399 1.21092 0.94730 1.00220 0.95628 1.21060 1.00217 0.94652 0.96738 1.20957 0.96398 0.95858 0.93186 1.98372 1.69985 1.90642 1.45629 1.21043 0.94999 0.99731 0.96973 1.21055 0.99504 0.95676 0.95529 1.23856 1.03069 0.99418 0.74393 0.92582 0.91702 0.91164 0.90056 0.76847 0.89816 0.89891 0.90001 0.89846 0.84769 0.84846 0.84892 0.84886 0.89319 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.70 13.29 55.43 0.74 -21.97 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.51 -12.50 8.68 -34.44 -0.30 -12.80 16 8 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 9 C 0.04 0.82 3.67 -90.84 -0.33 0.49 16 10 C 0.08 1.47 8.02 -2.84 -0.02 1.45 16 11 N -0.57 -10.90 3.53 -180.24 -0.64 -11.54 16 12 C 0.60 11.28 8.09 -86.92 -0.70 10.57 16 13 S -0.71 -15.79 29.02 -107.50 -3.12 -18.91 16 14 N -0.70 -10.18 5.56 -62.03 -0.34 -10.53 16 15 C 0.14 1.71 5.11 -4.04 -0.02 1.69 16 16 C -0.10 -0.84 5.46 -27.88 -0.15 -1.00 16 17 C -0.07 -0.63 5.13 -104.62 -0.54 -1.16 16 18 C -0.10 -0.87 9.70 -39.59 -0.38 -1.26 16 19 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 20 C -0.04 -0.35 6.32 -39.50 -0.25 -0.60 16 21 Cl -0.08 -0.66 28.96 -51.86 -1.50 -2.17 16 22 C -0.11 -0.93 9.83 -39.55 -0.39 -1.32 16 23 C -0.10 -0.84 9.70 -39.59 -0.38 -1.23 16 24 C 0.11 2.19 8.10 -2.96 -0.02 2.16 16 25 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 26 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 29 H 0.40 5.00 8.08 -40.82 -0.33 4.67 16 30 H 0.08 1.19 7.99 -51.93 -0.41 0.77 16 31 H 0.08 1.11 7.99 -51.93 -0.42 0.70 16 32 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.09 1.83 8.09 -51.93 -0.42 1.41 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 363.50 15.07 5.48 5.48 Total: -1.00 -29.82 363.50 -13.74 -43.56 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.34 Total: 3.98 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -3.98 Total: -2.77 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.24 Total: -44.03 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: -15.79 SS G_CDS: -3.12 Total: -18.91 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.82 -13.74 -43.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249751050.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.173 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds