Wall clock time and date at job start Tue Mar 31 2020 14:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47173 * 299.99471 * 3 2 1 6 6 H 1.48498 * 109.47243 * 59.99961 * 3 2 1 7 7 C 1.37878 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47805 * 86.03824 * 90.88256 * 10 9 7 12 12 C 1.34776 * 134.45584 * 204.64698 * 11 10 9 13 13 S 1.71205 * 120.00137 * 179.86747 * 12 11 10 14 14 N 1.34776 * 120.00289 * 359.86435 * 12 11 10 15 15 C 1.46495 * 120.00457 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47291 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.47125 * 179.97438 * 16 15 14 18 18 C 1.38239 * 119.98793 * 269.72896 * 17 16 15 19 19 C 1.38215 * 120.00949 * 179.72806 * 18 17 16 20 20 C 1.38344 * 119.98890 * 0.54028 * 19 18 17 21 21 Cl 1.73603 * 120.01483 * 179.70421 * 20 19 18 22 22 C 1.38353 * 119.97581 * 359.73280 * 20 19 18 23 23 C 1.38215 * 119.98364 * 359.97438 * 22 20 19 24 24 C 1.47582 * 91.05413 * 24.54887 * 11 10 9 25 25 H 0.96999 * 119.99516 * 0.02562 * 1 2 3 26 26 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 27 27 H 1.08999 * 113.76704 * 205.15033 * 10 9 7 28 28 H 1.09002 * 113.76463 * 336.53826 * 10 9 7 29 29 H 0.97009 * 119.99409 * 0.02562 * 14 12 11 30 30 H 1.09001 * 109.46877 * 299.99639 * 15 14 12 31 31 H 1.09001 * 109.47402 * 59.99458 * 15 14 12 32 32 H 1.09001 * 109.46881 * 299.99657 * 16 15 14 33 33 H 1.08997 * 109.47051 * 60.00116 * 16 15 14 34 34 H 1.08003 * 119.99497 * 359.97438 * 18 17 16 35 35 H 1.08010 * 120.00443 * 180.26915 * 19 18 17 36 36 H 1.07996 * 120.01155 * 179.97438 * 22 20 19 37 37 H 1.08000 * 119.99550 * 179.97438 * 23 22 20 38 38 H 1.08999 * 113.77186 * 221.15323 * 24 11 10 39 39 H 1.09004 * 113.76624 * 89.74800 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7561 -2.9292 -1.3924 11 7 2.0418 -3.6480 -1.5144 12 6 2.8015 -4.0542 -2.5509 13 16 4.2725 -4.8810 -2.2618 14 7 2.4033 -3.8096 -3.8150 15 6 3.2287 -4.2515 -4.9416 16 6 2.5542 -3.8523 -6.2556 17 6 3.4037 -4.3064 -7.4146 18 6 4.3729 -3.4671 -7.9315 19 6 5.1561 -3.8853 -8.9908 20 6 4.9624 -5.1398 -9.5410 21 17 5.9406 -5.6627 -10.8765 22 6 3.9885 -5.9772 -9.0269 23 6 3.2100 -5.5603 -7.9637 24 6 2.1608 -3.7402 -0.0462 25 1 -0.4849 0.8401 -0.0004 26 1 0.4833 -2.5466 0.7730 27 1 -0.1136 -3.5857 -1.3663 28 1 0.6454 -2.1022 -2.0938 29 1 1.5699 -3.3408 -3.9787 30 1 4.2102 -3.7816 -4.8792 31 1 3.3418 -5.3351 -4.9062 32 1 1.5729 -4.3226 -6.3178 33 1 2.4409 -2.7688 -6.2913 34 1 4.5209 -2.4860 -7.5049 35 1 5.9163 -3.2311 -9.3918 36 1 3.8365 -6.9564 -9.4563 37 1 2.4493 -6.2137 -7.5625 38 1 3.1695 -3.5596 0.3250 39 1 1.7045 -4.6355 0.3761 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249751050.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:22 Heat of formation + Delta-G solvation = 40.908935 kcal Electronic energy + Delta-G solvation = -21418.744331 eV Core-core repulsion = 18092.200961 eV Total energy + Delta-G solvation = -3326.543370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99752 -40.44267 -38.37737 -37.44222 -34.93433 -34.11181 -32.03551 -31.52406 -29.06783 -27.49578 -27.01908 -24.56990 -23.83115 -23.78519 -22.11382 -20.96967 -18.84978 -18.43203 -18.39545 -17.95285 -16.97951 -16.56865 -16.54547 -16.30404 -15.90279 -15.57950 -14.88122 -14.53631 -14.47992 -14.41081 -14.32514 -13.74282 -13.50127 -13.37529 -13.01842 -12.79301 -12.72132 -12.48454 -12.38964 -12.24179 -12.11569 -12.09196 -11.98533 -11.75288 -11.35453 -11.20260 -10.64920 -10.01482 -9.73325 -9.58421 -8.88806 -8.75335 -8.25334 -6.33300 0.09141 0.32355 0.57299 0.91025 1.14659 1.36463 1.42978 1.52215 1.60748 2.33149 2.38091 2.63321 3.05589 3.75933 3.78193 3.91181 3.96088 4.07686 4.08490 4.28838 4.36027 4.37325 4.43704 4.52262 4.55824 4.64693 4.70386 4.75730 4.83992 5.01098 5.02108 5.04360 5.22340 5.25407 5.46192 5.55407 5.61439 5.71888 5.81536 5.93500 6.20640 6.62434 6.73312 7.36024 8.83557 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.017762 B = 0.002406 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.987250 B =11634.000380 C =12351.630643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.033 3.967 3 Si 0.943 3.057 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.042 0.958 9 C 0.026 3.974 10 C 0.099 3.901 11 N -0.576 5.576 12 C 0.604 3.396 13 S -0.777 6.777 14 N -0.675 5.675 15 C 0.141 3.859 16 C -0.082 4.082 17 C -0.079 4.079 18 C -0.107 4.107 19 C -0.117 4.117 20 C -0.049 4.049 21 Cl -0.076 7.076 22 C -0.115 4.115 23 C -0.102 4.102 24 C 0.122 3.878 25 H 0.267 0.733 26 H 0.058 0.942 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.410 0.590 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.067 0.933 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 -7.552 -19.077 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.169 4.169 3 Si 0.770 3.230 4 H -0.205 1.205 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.060 0.940 9 C 0.007 3.993 10 C -0.025 4.025 11 N -0.282 5.282 12 C 0.240 3.760 13 S -0.651 6.651 14 N -0.307 5.307 15 C 0.017 3.983 16 C -0.120 4.120 17 C -0.080 4.080 18 C -0.125 4.125 19 C -0.136 4.136 20 C -0.076 4.076 21 Cl -0.047 7.047 22 C -0.134 4.134 23 C -0.120 4.120 24 C 0.000 4.000 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.123 0.877 28 H 0.091 0.909 29 H 0.249 0.751 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.086 0.914 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.735 -8.044 -19.186 20.817 hybrid contribution -0.221 1.492 -0.231 1.526 sum 0.515 -6.552 -19.417 20.499 Atomic orbital electron populations 1.69980 1.06532 1.27817 1.49997 1.25479 0.95557 1.01559 0.94284 0.85726 0.78789 0.80526 0.77965 1.20517 1.20316 1.20285 1.20970 0.92319 0.90913 1.51491 0.94006 1.20358 0.94323 0.91317 0.93341 1.24001 0.83978 0.93657 1.00902 1.49479 1.21806 1.50276 1.06644 1.21191 0.89696 0.82721 0.82406 1.93286 1.17954 1.60488 1.93398 1.44748 1.25811 1.57617 1.02498 1.21566 0.93758 1.00738 0.82195 1.20759 0.98858 1.03339 0.89048 1.19793 0.96921 0.94682 0.96606 1.21288 0.94718 1.00786 0.95684 1.21243 1.00585 0.94869 0.96888 1.21142 0.96760 0.96250 0.93410 1.98369 1.70051 1.90644 1.45674 1.21275 0.94765 1.00310 0.97048 1.21303 0.99711 0.95700 0.95278 1.23784 1.01686 0.99766 0.74778 0.92402 0.92364 0.87743 0.90861 0.75102 0.91738 0.90678 0.87928 0.88867 0.83899 0.83897 0.83530 0.83141 0.91442 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.42 13.29 21.45 0.28 -45.13 16 2 C 0.03 1.60 5.46 84.65 0.46 2.06 16 3 Si 0.94 40.45 29.54 68.60 2.03 42.48 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.52 -25.52 8.68 25.60 0.22 -25.30 16 8 H 0.04 2.21 7.81 -2.91 -0.02 2.18 16 9 C 0.03 1.08 3.67 -10.88 -0.04 1.04 16 10 C 0.10 3.42 8.02 86.44 0.69 4.11 16 11 N -0.58 -20.98 3.53 -724.16 -2.56 -23.54 16 12 C 0.60 22.15 8.09 179.05 1.45 23.60 16 13 S -0.78 -34.83 29.02 -56.49 -1.64 -36.47 16 14 N -0.68 -18.33 5.56 -350.17 -1.95 -20.27 16 15 C 0.14 3.27 5.11 86.38 0.44 3.71 16 16 C -0.08 -1.22 5.46 29.85 0.16 -1.06 16 17 C -0.08 -1.27 5.13 -19.86 -0.10 -1.37 16 18 C -0.11 -1.76 9.70 22.26 0.22 -1.54 16 19 C -0.12 -1.97 9.83 22.29 0.22 -1.75 16 20 C -0.05 -0.86 6.32 22.32 0.14 -0.72 16 21 Cl -0.08 -1.29 28.96 -2.72 -0.08 -1.37 16 22 C -0.12 -1.81 9.83 22.29 0.22 -1.59 16 23 C -0.10 -1.52 9.70 22.27 0.22 -1.30 16 24 C 0.12 4.53 8.10 86.49 0.70 5.23 16 25 H 0.27 12.80 8.31 -92.71 -0.77 12.03 16 26 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 28 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 29 H 0.41 9.11 8.08 -92.70 -0.75 8.36 16 30 H 0.06 1.80 7.99 -2.39 -0.02 1.78 16 31 H 0.07 1.92 7.99 -2.39 -0.02 1.90 16 32 H 0.10 1.15 8.09 -2.39 -0.02 1.13 16 33 H 0.09 1.25 8.08 -2.39 -0.02 1.23 16 34 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.07 2.80 8.09 -2.39 -0.02 2.78 16 39 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -63.94 363.50 1.40 -62.54 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.31 Total: 16.66 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 5.00 Total: 5.12 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -4.22 Total: -88.95 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: -34.83 SS G_CDS: -1.64 Total: -36.47 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -63.94 1.40 -62.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249751050.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.445 kcal (2) G-P(sol) polarization free energy of solvation -63.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds