Wall clock time and date at job start Tue Mar 31 2020 14:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86798 * 120.00295 * 2 1 4 4 H 1.48499 * 109.47422 * 270.00489 * 3 2 1 5 5 H 1.48507 * 109.46965 * 30.00296 * 3 2 1 6 6 H 1.48501 * 109.47330 * 150.00331 * 3 2 1 7 7 C 1.38656 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00080 * 359.97438 * 7 2 1 9 9 O 1.34817 * 120.00581 * 179.97438 * 7 2 1 10 10 C 1.35642 * 117.00225 * 185.05482 * 9 7 2 11 11 C 1.39067 * 119.92832 * 354.45070 * 10 9 7 12 12 C 1.37740 * 120.07278 * 180.02562 * 11 10 9 13 13 C 1.39670 * 119.92536 * 359.97438 * 12 11 10 14 14 C 1.47763 * 120.07016 * 180.02562 * 13 12 11 15 15 N 1.31092 * 125.12381 * 359.97438 * 14 13 12 16 16 C 1.35570 * 109.66106 * 180.02562 * 15 14 13 17 17 C 1.39962 * 133.23897 * 179.97438 * 16 15 14 18 18 C 1.37875 * 119.89183 * 180.25246 * 17 16 15 19 19 C 1.39857 * 120.30429 * 359.45717 * 18 17 16 20 20 C 1.38213 * 120.24980 * 0.55517 * 19 18 17 21 21 C 1.38787 * 119.97165 * 359.72874 * 20 19 18 22 22 N 1.36982 * 125.12333 * 179.97438 * 14 13 12 23 23 H 0.97008 * 126.41072 * 0.03181 * 22 14 13 24 24 O 1.36579 * 108.53345 * 180.34941 * 19 18 17 25 25 C 1.43964 * 105.51540 * 17.58996 * 24 19 18 26 26 O 1.36637 * 131.18930 * 180.36279 * 18 17 16 27 27 C 1.39679 * 119.86026 * 0.28014 * 13 12 11 28 28 C 1.37740 * 119.92031 * 359.42335 * 27 13 12 29 29 H 0.96998 * 119.99836 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.96063 * 359.97438 * 11 10 9 31 31 H 1.07995 * 120.03305 * 180.02562 * 12 11 10 32 32 H 1.08001 * 120.05639 * 359.97432 * 17 16 15 33 33 H 1.07998 * 120.01095 * 179.74947 * 20 19 18 34 34 H 1.08994 * 110.55630 * 91.27289 * 25 24 19 35 35 H 1.09001 * 110.55156 * 214.10319 * 25 24 19 36 36 H 1.07992 * 120.03910 * 179.69823 * 27 13 12 37 37 H 1.08003 * 119.96600 * 180.30069 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3570 -1.2008 -0.0011 10 6 3.9727 -2.4047 -0.1081 11 6 3.2189 -3.5733 -0.0944 12 6 3.8411 -4.7974 -0.2023 13 6 5.2307 -4.8641 -0.3261 14 6 5.9014 -6.1756 -0.4427 15 7 5.2930 -7.3367 -0.4408 16 6 6.2067 -8.3307 -0.5640 17 6 6.1049 -9.7256 -0.6160 18 6 7.2430 -10.4933 -0.7436 19 6 8.4988 -9.8843 -0.8328 20 6 8.6101 -8.5076 -0.7821 21 6 7.4722 -7.7244 -0.6480 22 7 7.2527 -6.3612 -0.5689 23 1 7.9292 -5.6665 -0.5969 24 8 9.4464 -10.8597 -0.9588 25 6 8.7310 -12.0416 -1.3636 26 8 7.4110 -11.8470 -0.8228 27 6 5.9854 -3.6888 -0.3341 28 6 5.3565 -2.4677 -0.2320 29 1 -0.4850 0.8400 0.0004 30 1 2.1444 -3.5209 0.0018 31 1 3.2550 -5.7044 -0.1920 32 1 5.1368 -10.2001 -0.5518 33 1 9.5821 -8.0414 -0.8472 34 1 8.6926 -12.1123 -2.4505 35 1 9.1917 -12.9327 -0.9371 36 1 7.0604 -3.7373 -0.4248 37 1 5.9389 -1.5583 -0.2430 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250644780.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:40 Heat of formation + Delta-G solvation = 15.680966 kcal Electronic energy + Delta-G solvation = -24912.268542 eV Core-core repulsion = 21008.478089 eV Total energy + Delta-G solvation = -3903.790453 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.52910 -41.61900 -39.34311 -37.05310 -36.47467 -35.81276 -33.19973 -32.64092 -30.62812 -30.46653 -29.67294 -28.17416 -26.04298 -25.38203 -23.36758 -22.95033 -22.28268 -21.80608 -20.45315 -18.92754 -18.41229 -18.03138 -17.69114 -17.27170 -17.03165 -15.94524 -15.32765 -15.23379 -14.98489 -14.84327 -14.29795 -14.11329 -14.07108 -13.95765 -13.88460 -13.82131 -13.17549 -12.94624 -12.68144 -12.52054 -12.41848 -11.79161 -11.74894 -11.53809 -11.03857 -10.93051 -10.80267 -10.33918 -10.32593 -9.98345 -9.59000 -9.09104 -8.54968 -8.32924 -8.22757 -7.25808 -6.62616 -4.27288 0.56183 1.12556 1.66937 1.94716 2.32338 2.82870 2.97090 3.11038 3.14426 3.26761 3.27450 3.59581 4.06392 4.21213 4.26440 4.33684 4.41350 4.52213 4.59311 4.65780 4.90841 4.94232 5.09479 5.19765 5.32272 5.33683 5.45204 5.76065 5.80687 5.90219 5.92377 5.99604 6.09138 6.22239 6.38864 6.57426 6.71653 6.84758 6.94871 7.04620 7.28144 7.33103 7.58959 7.80144 7.89730 8.70220 9.28512 10.43381 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.045730 B = 0.002109 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.140074 B =13275.451887 C =13857.692697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.391 4.391 8 H 0.112 0.888 9 O -0.201 6.201 10 C 0.175 3.825 11 C -0.227 4.227 12 C -0.011 4.011 13 C -0.147 4.147 14 C 0.378 3.622 15 N -0.497 5.497 16 C 0.076 3.924 17 C -0.057 4.057 18 C 0.028 3.972 19 C 0.040 3.960 20 C -0.092 4.092 21 C 0.050 3.950 22 N -0.598 5.598 23 H 0.423 0.577 24 O -0.308 6.308 25 C 0.214 3.786 26 O -0.308 6.308 27 C -0.050 4.050 28 C -0.192 4.192 29 H 0.284 0.716 30 H 0.142 0.858 31 H 0.129 0.871 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.988 -16.185 -2.650 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.466 4.466 8 H 0.130 0.870 9 O -0.103 6.103 10 C 0.120 3.880 11 C -0.246 4.246 12 C -0.031 4.031 13 C -0.151 4.151 14 C 0.116 3.884 15 N -0.217 5.217 16 C -0.044 4.044 17 C -0.077 4.077 18 C -0.018 4.018 19 C -0.006 4.006 20 C -0.113 4.113 21 C -0.060 4.060 22 N -0.210 5.210 23 H 0.263 0.737 24 O -0.224 6.224 25 C 0.102 3.898 26 O -0.224 6.224 27 C -0.070 4.070 28 C -0.212 4.212 29 H 0.094 0.906 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.152 0.848 34 H 0.101 0.899 35 H 0.147 0.853 36 H 0.130 0.870 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 16.044 -16.203 -2.470 22.935 hybrid contribution 1.507 0.891 -0.174 1.760 sum 17.551 -15.312 -2.644 23.441 Atomic orbital electron populations 1.69634 1.05679 1.29027 1.45663 1.24541 0.95096 0.99120 0.95186 0.86157 0.80365 0.81111 0.79188 1.19631 1.20509 1.18205 1.20885 0.76527 0.97014 1.52199 0.87027 1.83527 1.23073 1.26098 1.77600 1.19304 0.91693 0.85475 0.91539 1.21255 1.01596 0.91295 1.10485 1.20856 0.92206 0.97599 0.92438 1.17155 0.93373 0.86377 1.18204 1.21705 0.78404 0.94038 0.94213 1.70689 1.30314 0.95962 1.24783 1.18494 0.88744 0.92759 1.04446 1.18736 0.96577 0.89054 1.03332 1.19163 0.93986 0.82338 1.06297 1.19060 0.86169 0.90103 1.05222 1.18249 0.97097 0.88286 1.07700 1.18128 0.95934 0.84127 1.07826 1.43092 1.09029 1.05569 1.63276 0.73709 1.87342 1.30964 1.18846 1.85286 1.25576 0.75951 0.89376 0.98849 1.87370 1.34369 1.19323 1.81313 1.20484 0.97844 0.91048 0.97621 1.20029 0.91943 0.97593 1.11607 0.90610 0.84085 0.85312 0.83967 0.84815 0.89927 0.85250 0.87017 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.49 13.96 55.48 0.77 -22.72 16 2 C 0.07 1.74 5.49 -17.52 -0.10 1.64 16 3 Si 0.91 20.15 28.62 -169.99 -4.86 15.29 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.22 9.94 30.89 0.31 -9.91 16 8 H 0.11 2.97 5.42 -52.48 -0.28 2.69 16 9 O -0.20 -4.83 8.58 0.42 0.00 -4.83 16 10 C 0.18 3.64 6.65 -38.97 -0.26 3.39 16 11 C -0.23 -4.49 9.15 -39.46 -0.36 -4.85 16 12 C -0.01 -0.19 9.67 -39.23 -0.38 -0.57 16 13 C -0.15 -2.36 5.88 -104.93 -0.62 -2.98 16 14 C 0.38 5.73 7.73 -154.51 -1.19 4.54 16 15 N -0.50 -8.20 10.83 -8.70 -0.09 -8.29 16 16 C 0.08 1.13 7.21 -84.69 -0.61 0.52 16 17 C -0.06 -0.75 10.11 -39.07 -0.39 -1.14 16 18 C 0.03 0.35 7.13 -39.11 -0.28 0.07 16 19 C 0.04 0.48 7.13 -38.99 -0.28 0.20 16 20 C -0.09 -1.03 10.07 -39.39 -0.40 -1.42 16 21 C 0.05 0.65 7.29 -83.86 -0.61 0.04 16 22 N -0.60 -7.24 6.13 -8.42 -0.05 -7.29 16 23 H 0.42 3.67 8.00 -40.82 -0.33 3.34 16 24 O -0.31 -3.25 11.40 -45.94 -0.52 -3.77 16 25 C 0.21 1.63 8.88 101.05 0.90 2.53 16 26 O -0.31 -3.40 11.40 -46.14 -0.53 -3.93 16 27 C -0.05 -0.73 9.68 -39.23 -0.38 -1.11 16 28 C -0.19 -3.31 9.97 -39.45 -0.39 -3.70 16 29 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.14 2.92 5.62 -52.48 -0.29 2.63 16 31 H 0.13 2.14 7.80 -52.49 -0.41 1.73 16 32 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.11 1.19 7.09 -52.49 -0.37 0.82 16 37 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 326.93 15.07 4.93 4.93 Total: -1.00 -29.86 326.93 -8.34 -38.20 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -2.94 Total: 5.19 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -5.05 Total: -12.77 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.63 Total: -38.30 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -1.05 Total: -12.53 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.86 Total: 15.29 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.86 -8.34 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250644780.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.881 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds