Wall clock time and date at job start Tue Mar 31 2020 14:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86798 * 120.00295 * 2 1 4 4 H 1.48499 * 109.47422 * 270.00489 * 3 2 1 5 5 H 1.48507 * 109.46965 * 30.00296 * 3 2 1 6 6 H 1.48501 * 109.47330 * 150.00331 * 3 2 1 7 7 C 1.38656 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00080 * 359.97438 * 7 2 1 9 9 O 1.34817 * 120.00581 * 179.97438 * 7 2 1 10 10 C 1.35642 * 117.00225 * 185.05482 * 9 7 2 11 11 C 1.39067 * 119.92832 * 354.45070 * 10 9 7 12 12 C 1.37740 * 120.07278 * 180.02562 * 11 10 9 13 13 C 1.39670 * 119.92536 * 359.97438 * 12 11 10 14 14 C 1.47763 * 120.07016 * 180.02562 * 13 12 11 15 15 N 1.31092 * 125.12381 * 359.97438 * 14 13 12 16 16 C 1.35570 * 109.66106 * 180.02562 * 15 14 13 17 17 C 1.39962 * 133.23897 * 179.97438 * 16 15 14 18 18 C 1.37875 * 119.89183 * 180.25246 * 17 16 15 19 19 C 1.39857 * 120.30429 * 359.45717 * 18 17 16 20 20 C 1.38213 * 120.24980 * 0.55517 * 19 18 17 21 21 C 1.38787 * 119.97165 * 359.72874 * 20 19 18 22 22 N 1.36982 * 125.12333 * 179.97438 * 14 13 12 23 23 H 0.97008 * 126.41072 * 0.03181 * 22 14 13 24 24 O 1.36579 * 108.53345 * 180.34941 * 19 18 17 25 25 C 1.43964 * 105.51540 * 17.58996 * 24 19 18 26 26 O 1.36637 * 131.18930 * 180.36279 * 18 17 16 27 27 C 1.39679 * 119.86026 * 0.28014 * 13 12 11 28 28 C 1.37740 * 119.92031 * 359.42335 * 27 13 12 29 29 H 0.96998 * 119.99836 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.96063 * 359.97438 * 11 10 9 31 31 H 1.07995 * 120.03305 * 180.02562 * 12 11 10 32 32 H 1.08001 * 120.05639 * 359.97432 * 17 16 15 33 33 H 1.07998 * 120.01095 * 179.74947 * 20 19 18 34 34 H 1.08994 * 110.55630 * 91.27289 * 25 24 19 35 35 H 1.09001 * 110.55156 * 214.10319 * 25 24 19 36 36 H 1.07992 * 120.03910 * 179.69823 * 27 13 12 37 37 H 1.08003 * 119.96600 * 180.30069 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3570 -1.2008 -0.0011 10 6 3.9727 -2.4047 -0.1081 11 6 3.2189 -3.5733 -0.0944 12 6 3.8411 -4.7974 -0.2023 13 6 5.2307 -4.8641 -0.3261 14 6 5.9014 -6.1756 -0.4427 15 7 5.2930 -7.3367 -0.4408 16 6 6.2067 -8.3307 -0.5640 17 6 6.1049 -9.7256 -0.6160 18 6 7.2430 -10.4933 -0.7436 19 6 8.4988 -9.8843 -0.8328 20 6 8.6101 -8.5076 -0.7821 21 6 7.4722 -7.7244 -0.6480 22 7 7.2527 -6.3612 -0.5689 23 1 7.9292 -5.6665 -0.5969 24 8 9.4464 -10.8597 -0.9588 25 6 8.7310 -12.0416 -1.3636 26 8 7.4110 -11.8470 -0.8228 27 6 5.9854 -3.6888 -0.3341 28 6 5.3565 -2.4677 -0.2320 29 1 -0.4850 0.8400 0.0004 30 1 2.1444 -3.5209 0.0018 31 1 3.2550 -5.7044 -0.1920 32 1 5.1368 -10.2001 -0.5518 33 1 9.5821 -8.0414 -0.8472 34 1 8.6926 -12.1123 -2.4505 35 1 9.1917 -12.9327 -0.9371 36 1 7.0604 -3.7373 -0.4248 37 1 5.9389 -1.5583 -0.2430 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250644780.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:39 Heat of formation + Delta-G solvation = -2.937924 kcal Electronic energy + Delta-G solvation = -24913.075918 eV Core-core repulsion = 21008.478089 eV Total energy + Delta-G solvation = -3904.597828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.47132 -42.57926 -40.90306 -38.50460 -37.29701 -36.86326 -34.50917 -34.27392 -32.02000 -31.81152 -30.68498 -29.24156 -27.46814 -26.49583 -24.52982 -24.09685 -23.50295 -23.03720 -21.71754 -20.05858 -19.73466 -19.45551 -18.86567 -18.40523 -17.92501 -16.89198 -16.63407 -16.37977 -16.15783 -16.11508 -15.78096 -15.62218 -15.31991 -15.10836 -14.90600 -14.82207 -14.42671 -14.17221 -14.09038 -13.99251 -13.57473 -13.09255 -12.98292 -12.75733 -12.63572 -12.50926 -11.96971 -11.85241 -11.37574 -11.32747 -11.06745 -10.89440 -9.95282 -9.51668 -9.26310 -8.54886 -8.51888 -6.24711 -0.51524 0.15950 0.40092 0.50803 1.35042 1.37574 1.41858 1.54268 1.76079 1.95186 2.27774 2.49914 2.55380 2.79135 2.96378 3.10966 3.14727 3.35325 3.57711 3.81688 4.00304 4.03191 4.05615 4.15957 4.20456 4.26024 4.38443 4.46225 4.61319 4.76235 4.88307 4.93074 4.97727 5.05059 5.15718 5.23339 5.31734 5.49867 5.53951 5.71342 5.79351 6.04016 6.07379 6.35047 6.77680 6.80849 7.49513 8.58648 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.045730 B = 0.002109 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.140074 B =13275.451887 C =13857.692697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.403 4.403 8 H 0.085 0.915 9 O -0.229 6.229 10 C 0.145 3.855 11 C -0.238 4.238 12 C -0.020 4.020 13 C -0.122 4.122 14 C 0.359 3.641 15 N -0.521 5.521 16 C 0.043 3.957 17 C -0.069 4.069 18 C 0.027 3.973 19 C 0.044 3.956 20 C -0.086 4.086 21 C 0.057 3.943 22 N -0.575 5.575 23 H 0.442 0.558 24 O -0.313 6.313 25 C 0.204 3.796 26 O -0.321 6.321 27 C -0.033 4.033 28 C -0.184 4.184 29 H 0.286 0.714 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.107 0.893 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.051 -17.799 -3.227 28.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.188 4.188 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.479 4.479 8 H 0.103 0.897 9 O -0.134 6.134 10 C 0.093 3.907 11 C -0.257 4.257 12 C -0.040 4.040 13 C -0.125 4.125 14 C 0.096 3.904 15 N -0.243 5.243 16 C -0.077 4.077 17 C -0.090 4.090 18 C -0.019 4.019 19 C -0.002 4.002 20 C -0.107 4.107 21 C -0.055 4.055 22 N -0.189 5.189 23 H 0.285 0.715 24 O -0.229 6.229 25 C 0.094 3.906 26 O -0.237 6.237 27 C -0.053 4.053 28 C -0.203 4.203 29 H 0.096 0.904 30 H 0.135 0.865 31 H 0.149 0.851 32 H 0.161 0.839 33 H 0.184 0.816 34 H 0.124 0.876 35 H 0.183 0.817 36 H 0.185 0.815 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 21.175 -17.867 -3.055 27.874 hybrid contribution 0.308 0.709 -0.059 0.775 sum 21.483 -17.158 -3.114 27.670 Atomic orbital electron populations 1.69726 1.07083 1.29856 1.48944 1.25344 0.95885 1.02400 0.95172 0.85196 0.78976 0.77080 0.79381 1.18967 1.19537 1.18051 1.20750 0.77870 0.96340 1.52899 0.89739 1.83489 1.21465 1.27363 1.81132 1.19876 0.93379 0.84849 0.92573 1.21192 1.00752 0.92426 1.11359 1.20896 0.93506 0.96677 0.92967 1.17368 0.92690 0.87796 1.14637 1.21320 0.79710 0.93144 0.96192 1.70570 1.32039 0.97020 1.24633 1.18719 0.89465 0.93186 1.06303 1.18811 0.97274 0.88920 1.03959 1.19255 0.94051 0.83085 1.05548 1.19262 0.86182 0.90696 1.04079 1.18489 0.97803 0.87991 1.06411 1.18238 0.95739 0.84256 1.07236 1.42872 1.08190 1.05883 1.61932 0.71451 1.87342 1.31070 1.19268 1.85251 1.26176 0.74393 0.89449 1.00579 1.87363 1.36272 1.18516 1.81554 1.20981 1.00350 0.89060 0.94871 1.20420 0.90262 0.99724 1.09855 0.90403 0.86525 0.85084 0.83869 0.81622 0.87581 0.81731 0.81550 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.95 13.96 21.61 0.30 -52.65 16 2 C 0.01 0.64 5.49 84.83 0.47 1.11 16 3 Si 0.97 42.86 28.62 68.60 1.96 44.82 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.40 -22.48 9.94 67.92 0.68 -21.81 16 8 H 0.09 4.98 5.42 -2.91 -0.02 4.96 16 9 O -0.23 -11.46 8.58 -21.41 -0.18 -11.64 16 10 C 0.14 6.14 6.65 22.67 0.15 6.29 16 11 C -0.24 -9.93 9.15 22.35 0.20 -9.72 16 12 C -0.02 -0.72 9.67 22.50 0.22 -0.51 16 13 C -0.12 -3.63 5.88 -20.06 -0.12 -3.75 16 14 C 0.36 9.99 7.73 136.43 1.05 11.05 16 15 N -0.52 -16.62 10.83 -181.45 -1.97 -18.58 16 16 C 0.04 1.21 7.21 39.55 0.29 1.50 16 17 C -0.07 -1.75 10.11 22.60 0.23 -1.52 16 18 C 0.03 0.61 7.13 22.58 0.16 0.77 16 19 C 0.04 0.89 7.13 22.66 0.16 1.05 16 20 C -0.09 -1.57 10.07 22.40 0.23 -1.34 16 21 C 0.06 1.28 7.29 38.82 0.28 1.56 16 22 N -0.58 -11.59 6.13 -180.54 -1.11 -12.69 16 23 H 0.44 5.21 8.00 -92.70 -0.74 4.47 16 24 O -0.31 -5.39 11.40 -76.99 -0.88 -6.27 16 25 C 0.20 2.34 8.88 113.37 1.01 3.34 16 26 O -0.32 -6.28 11.40 -77.68 -0.89 -7.16 16 27 C -0.03 -0.84 9.68 22.50 0.22 -0.62 16 28 C -0.18 -5.89 9.97 22.35 0.22 -5.66 16 29 H 0.29 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.12 5.39 5.62 -2.91 -0.02 5.38 16 31 H 0.13 4.52 7.80 -2.91 -0.02 4.50 16 32 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.17 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.17 2.44 7.09 -2.91 -0.02 2.42 16 37 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -70.15 326.93 3.11 -67.03 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.42 Total: 15.42 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 5.44 Total: -18.27 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -2.77 Total: -83.93 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -1.95 Total: -25.08 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.96 Total: 44.82 kcal Total: -70.15 3.11 -67.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250644780.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.096 kcal (2) G-P(sol) polarization free energy of solvation -70.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds