Wall clock time and date at job start Tue Mar 31 2020 13:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29462 * 1 3 3 Si 1.86798 * 120.00086 * 2 1 4 4 H 1.48494 * 109.47096 * 270.00375 * 3 2 1 5 5 H 1.48510 * 109.47090 * 30.00480 * 3 2 1 6 6 H 1.48496 * 109.46904 * 150.00098 * 3 2 1 7 7 C 1.46453 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99627 * 180.02562 * 7 2 1 9 9 N 1.34336 * 120.00406 * 359.97438 * 7 2 1 10 10 C 1.37181 * 126.07257 * 179.97438 * 9 7 2 11 11 C 1.35277 * 107.43541 * 180.02562 * 10 9 7 12 12 N 1.40222 * 126.09734 * 179.97438 * 11 10 9 13 13 C 1.39611 * 120.00086 * 144.37184 * 12 11 10 14 14 C 1.38985 * 120.07354 * 353.77472 * 13 12 11 15 15 C 1.38069 * 119.91539 * 179.97438 * 14 13 12 16 16 C 1.38325 * 120.08038 * 0.27583 * 15 14 13 17 17 N 1.48017 * 119.91962 * 179.70289 * 16 15 14 18 18 O 1.31700 * 119.99983 * 0.02562 * 17 16 15 19 19 O 1.31698 * 119.99522 * 179.97438 * 17 16 15 20 20 C 1.38277 * 120.15364 * 359.44640 * 16 15 14 21 21 C 1.38104 * 120.08327 * 0.55245 * 20 16 15 22 22 C 1.50702 * 120.04253 * 179.69826 * 21 20 16 23 23 F 1.39901 * 109.47219 * 120.02451 * 22 21 20 24 24 F 1.39899 * 109.47688 * 240.02692 * 22 21 20 25 25 C 1.41423 * 107.79831 * 0.24366 * 11 10 9 26 26 N 1.30533 * 108.43033 * 359.58859 * 25 11 10 27 27 H 0.96999 * 119.99927 * 359.97438 * 1 2 3 28 28 H 1.07994 * 126.28194 * 0.05018 * 10 9 7 29 29 H 0.97000 * 119.99947 * 324.36472 * 12 11 10 30 30 H 1.07994 * 120.04320 * 359.95784 * 14 13 12 31 31 H 1.07998 * 119.95730 * 179.97438 * 15 14 13 32 32 H 1.08007 * 119.95398 * 180.29935 * 20 16 15 33 33 H 1.09004 * 109.46697 * 0.02711 * 22 21 20 34 34 H 1.08007 * 125.78146 * 179.73523 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2286 1.6177 0.0000 4 1 2.4760 2.0464 -1.4000 5 1 1.4261 2.6527 0.7002 6 1 3.5261 1.4401 0.7000 7 6 2.0268 -1.2684 -0.0006 8 1 3.1069 -1.2684 -0.0001 9 7 1.3551 -2.4318 -0.0006 10 6 1.9115 -3.6857 -0.0016 11 6 0.8962 -4.5796 -0.0017 12 7 1.0249 -5.9759 -0.0032 13 6 0.1109 -6.7619 0.7010 14 6 -0.8481 -6.1610 1.5078 15 6 -1.7508 -6.9414 2.2023 16 6 -1.6979 -8.3199 2.1003 17 7 -2.6632 -9.1534 2.8516 18 8 -3.5714 -8.5824 3.6156 19 8 -2.6146 -10.4659 2.7551 20 6 -0.7488 -8.9208 1.2940 21 6 0.1573 -8.1466 0.5964 22 6 1.1957 -8.8027 -0.2768 23 9 1.0355 -8.3698 -1.5974 24 9 2.4730 -8.4555 0.1761 25 6 -0.3181 -3.8547 -0.0066 26 7 -0.0376 -2.5798 -0.0003 27 1 -0.4850 0.8400 0.0004 28 1 2.9665 -3.9167 -0.0017 29 1 1.7490 -6.3957 -0.4935 30 1 -0.8870 -5.0850 1.5916 31 1 -2.4960 -6.4752 2.8298 32 1 -0.7135 -9.9973 1.2129 33 1 1.0762 -9.8853 -0.2323 34 1 -1.3094 -4.2833 -0.0119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001306945018.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:16 Heat of formation + Delta-G solvation = 20.599278 kcal Electronic energy + Delta-G solvation = -26386.660927 eV Core-core repulsion = 21961.146970 eV Total energy + Delta-G solvation = -4425.513957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.09865 -48.03907 -41.94267 -41.09073 -39.51794 -36.92861 -35.45335 -35.32771 -33.58956 -32.60383 -31.91189 -29.54258 -27.45761 -26.98763 -26.50721 -23.99022 -22.96360 -22.29808 -21.45005 -19.92161 -19.62602 -19.39298 -18.65467 -18.26862 -17.94517 -17.58621 -17.35383 -16.98124 -16.95311 -16.01422 -15.82026 -15.54180 -15.39111 -15.02858 -14.75757 -14.55383 -14.41665 -14.32739 -13.85969 -13.73748 -13.51003 -13.16108 -12.94812 -12.82554 -12.42572 -12.39881 -12.16555 -12.10099 -12.01139 -11.80567 -11.33785 -10.95707 -10.63743 -10.38789 -9.93330 -8.72268 -8.49994 -6.19217 -1.69350 -0.21950 0.14445 0.20513 1.21950 1.38341 1.54409 1.71135 1.88209 1.99484 2.14986 2.30290 2.54352 2.81095 2.89911 3.14439 3.25630 3.53227 3.65764 3.78229 3.97614 3.98239 4.20722 4.32862 4.38836 4.47233 4.62132 4.76237 4.83221 4.89798 4.93285 5.06574 5.26379 5.55857 5.73668 5.87642 6.17562 6.32097 6.59539 7.39360 7.54801 8.25036 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016617 B = 0.003249 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.576484 B = 8616.130211 C = 9971.293618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.015 3.985 3 Si 1.016 2.984 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.246 1.246 7 C -0.380 4.380 8 H 0.140 0.860 9 N -0.134 5.134 10 C -0.100 4.100 11 C -0.063 4.063 12 N -0.588 5.588 13 C 0.301 3.699 14 C -0.202 4.202 15 C 0.017 3.983 16 C -0.094 4.094 17 N 0.013 4.987 18 O -0.250 6.250 19 O -0.205 6.205 20 C 0.058 3.942 21 C -0.258 4.258 22 C 0.318 3.682 23 F -0.207 7.207 24 F -0.206 7.206 25 C -0.054 4.054 26 N -0.317 5.317 27 H 0.292 0.708 28 H 0.172 0.828 29 H 0.414 0.586 30 H 0.151 0.849 31 H 0.160 0.840 32 H 0.191 0.809 33 H 0.179 0.821 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.481 -11.547 -0.990 12.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.206 4.206 3 Si 0.834 3.166 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.170 1.170 7 C -0.514 4.514 8 H 0.157 0.843 9 N 0.102 4.898 10 C -0.249 4.249 11 C -0.170 4.170 12 N -0.201 5.201 13 C 0.183 3.817 14 C -0.225 4.225 15 C -0.004 4.004 16 C -0.187 4.187 17 N 0.474 4.526 18 O -0.425 6.425 19 O -0.394 6.394 20 C 0.037 3.963 21 C -0.265 4.265 22 C 0.264 3.736 23 F -0.188 7.188 24 F -0.187 7.187 25 C -0.228 4.228 26 N -0.148 5.148 27 H 0.104 0.896 28 H 0.190 0.810 29 H 0.253 0.747 30 H 0.169 0.831 31 H 0.177 0.823 32 H 0.208 0.792 33 H 0.196 0.804 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.147 -9.633 -1.293 10.567 hybrid contribution 0.354 -0.237 0.028 0.427 sum 4.501 -9.870 -1.264 10.922 Atomic orbital electron populations 1.69338 1.09742 1.31125 1.29705 1.28268 0.95856 1.03680 0.92842 0.84641 0.78723 0.73586 0.79640 1.18569 1.19418 1.16950 1.21604 0.92825 0.81104 1.55911 0.84266 1.43961 1.03953 1.04607 1.37264 1.21908 0.98718 0.84270 1.19980 1.16995 0.92968 0.82155 1.24859 1.41598 1.28568 1.02748 1.47169 1.18263 0.87775 0.89941 0.85675 1.21107 0.97970 1.01962 1.01506 1.20934 0.95825 0.90096 0.93518 1.20006 0.99475 0.90264 1.08969 1.50458 1.00516 1.02977 0.98604 1.96269 1.31735 1.75360 1.39168 1.96201 1.80475 0.90550 1.72135 1.20677 0.86529 1.02688 0.86359 1.19770 1.05338 0.91131 1.10245 1.20655 0.76771 1.01303 0.74832 1.93035 1.95399 1.92362 1.38031 1.93016 1.42312 1.94364 1.89053 1.23878 0.97927 0.91241 1.09764 1.77993 0.91394 1.16580 1.28830 0.89581 0.81043 0.74685 0.83135 0.82288 0.79175 0.80445 0.80922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.89 11.89 23.19 0.28 -38.61 16 2 C 0.02 0.71 5.69 87.18 0.50 1.20 16 3 Si 1.02 33.77 29.64 68.60 2.03 35.81 16 4 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 5 H -0.27 -8.74 7.11 99.48 0.71 -8.03 16 6 H -0.25 -7.64 7.11 99.48 0.71 -6.93 16 7 C -0.38 -18.27 10.47 86.45 0.91 -17.36 16 8 H 0.14 5.94 7.94 -2.91 -0.02 5.92 16 9 N -0.13 -6.66 3.65 -185.65 -0.68 -7.34 16 10 C -0.10 -4.23 11.48 83.17 0.95 -3.27 16 11 C -0.06 -2.43 6.34 37.90 0.24 -2.19 16 12 N -0.59 -17.89 5.35 -180.86 -0.97 -18.86 16 13 C 0.30 8.12 6.49 38.25 0.25 8.37 16 14 C -0.20 -5.71 8.42 22.41 0.19 -5.52 16 15 C 0.02 0.45 9.57 22.25 0.21 0.66 16 16 C -0.09 -2.39 6.89 36.41 0.25 -2.14 16 17 N 0.01 0.38 4.98 -46.39 -0.23 0.15 16 18 O -0.25 -8.56 19.15 3.51 0.07 -8.49 16 19 O -0.21 -6.17 19.14 3.52 0.07 -6.11 16 20 C 0.06 1.10 9.19 22.25 0.20 1.31 16 21 C -0.26 -5.25 5.39 -19.73 -0.11 -5.36 16 22 C 0.32 5.02 4.93 71.24 0.35 5.37 16 23 F -0.21 -4.26 16.39 44.97 0.74 -3.52 16 24 F -0.21 -4.03 16.15 44.97 0.73 -3.30 16 25 C -0.05 -2.35 9.53 85.67 0.82 -1.53 16 26 N -0.32 -16.30 10.47 -56.14 -0.59 -16.89 16 27 H 0.29 13.16 8.27 -92.71 -0.77 12.40 16 28 H 0.17 6.15 8.06 -2.91 -0.02 6.12 16 29 H 0.41 11.38 6.29 -92.71 -0.58 10.79 16 30 H 0.15 4.88 4.92 -2.91 -0.01 4.86 16 31 H 0.16 3.89 7.57 -2.91 -0.02 3.87 16 32 H 0.19 2.30 7.46 -2.91 -0.02 2.28 16 33 H 0.18 1.02 7.88 -2.39 -0.02 1.00 16 34 H 0.17 6.62 6.84 -2.91 -0.02 6.60 16 Total: -1.00 -63.27 317.75 6.83 -56.44 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.63 Total: 31.18 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 4.76 Total: -20.46 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -2.19 Total: -81.54 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.13 Total: -14.60 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 1.46 Total: -6.82 kcal Atomic # 14 Polarization: 33.77 SS G_CDS: 2.03 Total: 35.81 kcal Total: -63.27 6.83 -56.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001306945018.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.040 kcal (2) G-P(sol) polarization free energy of solvation -63.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds